mRNA_P-littoralis_Contig624.13.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig624.13.1 vs. uniprot
Match: D7FQ32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ32_ECTSI) HSP 1 Score: 847 bits (2189), Expect = 3.190e-296 Identity = 485/779 (62.26%), Postives = 570/779 (73.17%), Query Frame = 1
Query: 19 VAVMVGDGRAVKKYIKDGGDLEVRDEDGATALFHAAFWTHVEIAKELIHXXXXXXXXXXXXXXXXHVAAKNNQPRMTEVLVKAMKNKLGTQEEFGDTALHCAYRSKATECIETLLAAGADAEMLNHMGKTPRECEGTGVDRQEDMEDLDDDDDL--PR-SAAVSDAPSTGDASTVVGGCIDQDPDGG-ASARSPSRPSDGRSAASNSSPRTNRNRSGAHNGDGRGRGHTLDNLDSDYGKALFRVAHPPSVTGGAQWYSMTAYLFEPFASRAVRNAHQACIDGDQHHPFASLDSTNTVEDCDRAIPSGTQVTVRPRFPRAFCVSPVSATVVWTKDVHAVPFEVRLPASVASRTVSGCVEFYVGAVLLAQAHVEVTVEKPNDSRNAAEKPNVLGPVAKAFDTVYMCFAAADGPLLLPSLERFNRLGIAKLSWRPERGNDEKETTKRLIRESSIFQLCWSIPAKESSRVKNEITYAGSLAKAGSVAVRGIYWDPSMDVTSFETTQGLVFPVQLHNSFLLEEPCIHRLLERTADLASCPQGTANGGQGRNLQSG--SNNGDATQEMAAVPEVENMCTPAVKQTRGHMSRLRDMVDGADVVDLPRIVWIHPDDSGGKPCSVDITTDGWLKKPIRINFLCPISLKPGRCGEDGKGYKMTLPRGWSSKIGLALKIGVVVIAAASDTGEVAELPVPSTTVIASWAEENGRGPSSAERQGEMVNAAFDGLAGAVTDKWNDLIDSAFMDAEMEEGAPPPASAPLRKEVKNSYTNLRSLV-QKYDKGLKM 2334
+AVMVGD RAVKK+I GDL+ +D+DGATALFHAAFWTHVEIAK+LI XXXXXXXXXXXXXXXX A GA +E+LNHMG+TPR+CEGTGVDRQ D E+ DD PR S AVS+APS GD STVVG QD D G +S +SP+RP D RSAA++SSPRT+RNRSGAH GD G +N+D+ +A FR A+ P++ GG +W+ MTAYLFEP A AVRNAHQA IDGDQHHPF D+ N VEDCD+ IP GTQV VRPRFPR CVSPV++TVVW KDVHAVPFEVR PAS +S T+SG V+FY+GAVL+ QAHVE++V KPNDS AA+KP+VLGPVAKAFDT+Y+CFAAAD PLL+PSLE FNRLGI + WRPE GN++ TKRLIRESSIFQ+CWS+ AKES RV++E+ YA SLAKAGS+AVRGIYWD +MDVTS +T GL+FPV++HNSFLLEE C LL+R AD AS TA G QS ++GD AVP VE + T AV+ TRGH+SRLRDMV GA+ VD PR+ WI+PDDSG KP SVDITTD WLKKPIR+ FLCPIS+KPG CG+DG+GYK++LPRGW SKIG+ALKIGVVV+AAASD EVA LP+P + ++SW E+ G S + QG++VNAAFDGLAGAV DKWNDLIDS FMDAE E A P A+A L KEVK SY NL SL+ QKYDK K+
Sbjct: 1 MAVMVGDRRAVKKFINGSGDLDEKDDDGATALFHAAFWTHVEIAKDLISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXAGGASSEVLNHMGQTPRQCEGTGVDRQPDGENFDDXXXXXGPRGSGAVSEAPSAGDESTVVGDPGVQDRDAGFSSGKSPNRPHDERSAAASSSPRTSRNRSGAHAGD---TGRAKENVDAASTRAHFRAAYRPTIRGGGKWHPMTAYLFEPSAHSAVRNAHQARIDGDQHHPFVDSDNGNAVEDCDKTIPPGTQVVVRPRFPRTCCVSPVNSTVVWMKDVHAVPFEVRPPASTSSGTISGYVDFYIGAVLIGQAHVEMSVVKPNDSSGAADKPDVLGPVAKAFDTMYVCFAAADKPLLIPSLEWFNRLGIFNIVWRPEDGNEKD--TKRLIRESSIFQICWSMSAKESDRVRHEVKYASSLAKAGSLAVRGIYWDSTMDVTSIQTAHGLMFPVRMHNSFLLEEACAF-LLDRAADTASSTPETATGALAGGGQSARVEDDGDHNDGAVAVPNVEKLNTAAVQHTRGHVSRLRDMVGGANEVDCPRLAWIYPDDSG-KPRSVDITTDEWLKKPIRLVFLCPISMKPGWCGQDGRGYKISLPRGWGSKIGMALKIGVVVVAAASDADEVAGLPLPPVSAVSSWGEDGEGGKSLTQMQGDLVNAAFDGLAGAVPDKWNDLIDSTFMDAETETSARP-ATAQLCKEVKQSYKNLSSLLHQKYDKVCKV 770
BLAST of mRNA_P-littoralis_Contig624.13.1 vs. uniprot
Match: A0A6H5JCB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCB7_9PHAE) HSP 1 Score: 199 bits (506), Expect = 6.470e-55 Identity = 129/232 (55.60%), Postives = 154/232 (66.38%), Query Frame = 1
Query: 1990 LALKIGVVVIAAASDTGEVAELPVPSTTVIASWAEENGRGPSSAERQGEMVNAAFDGLAGAVTDKWNDLIDSAFMDAEMEEGAPPPASAPLRKEVKNSYTNLRSLV-QKYDKGLKMTGLEKVTHRAEGRSTTTTTEWVHPSVAELFRREGPALFVRGGLAKA----AREAAAREEAAMQHNKASDAGATANRGRGGHQLQGKGQGQDVMNTLRILENQVLALVERGGEGSGG 2670
+ALKIGVVV+AAASD EVA LP+P T ++SW E+ G S + QG++VNAAFDGLAGAV DK NDLIDS FM+AE E APP A+A L KEVK SY NL SL+ QKYDKGL EKVT+ A R T+ TTEWVHPSVAELFR +GP++F G LA A AREA R + Q ++SD G + +DVM+TLR+LE QVLA+ G GSGG
Sbjct: 1 MALKIGVVVVAAASDADEVAGLPLPPATAVSSWGEDGEGGKSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDSIFMNAETETSAPP-ATAQLCKEVKQSYKNLSSLLHQKYDKGL-----EKVTY-AGSRGTSPTTEWVHPSVAELFRSQGPSVFGAGALATADADAAREAVRRHK--EQKKRSSDGG-------------NRPGSEDVMSTLRLLEKQVLAMAGGGARGSGG 210
BLAST of mRNA_P-littoralis_Contig624.13.1 vs. uniprot
Match: F0Y427_AURAN (Flavodoxin-like domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y427_AURAN) HSP 1 Score: 84.3 bits (207), Expect = 9.300e-13 Identity = 68/243 (27.98%), Postives = 111/243 (45.68%), Query Frame = 1
Query: 1693 VPEVENMCTPAVKQTRGHMSRLRDMVDGADVVDLPRIVWIHPDDSGGKPCSVD--ITTDGWLKKPIRINFLCPISLKPGRCGEDGKGYKMTLPRGWSSKIGLALKIGVVVIAAASDTGEVA----ELPVPSTTVIASWAEENGRGPSSAERQGEMVNAAFDGLAGAVTDKWNDLIDSAFMDAEMEEGAPPPASAPLRKEVKNSYTNLRSLVQKYDKGLKMTGLEKVTHRAEGRSTTTTTEWVH 2403
V + V TRG L D+ +D + P++VW+ + K +V +T W KP+R+ F+CP++++ + G+DG GY++ LP+ W K G+A+ + + V+ A G + VP T+ + + +A+ E VN +D A DA +E+GAP + + S+ L+ ++K D GL +TGL KV G T TEWVH
Sbjct: 1084 VAAIRAELAKVVDATRGQTRLLMDLC--SDATECPKLVWMARE----KEAAVTRWLTPSSWYGKPVRVQFVCPVTMQVAKSGKDGGGYRVVLPKDWIKKWGVAVNLSLTVLRVAMQLGAASMGCYHAHVPDMTIDRARLK-------TADELYEEVNKG---------------LDPATRDA-LEKGAPE-----CKALSEASFQMLKGELKKEDPGLDLTGLVKV---VGGSGATLCTEWVH 1289
BLAST of mRNA_P-littoralis_Contig624.13.1 vs. uniprot
Match: A0A8J2STS7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STS7_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.420e-7 Identity = 70/260 (26.92%), Postives = 116/260 (44.62%), Query Frame = 1
Query: 1675 TQEMAAVPEVENMCTPAVKQTRGHMSRLRDMVDGADVVDLPRIVWIHPDDSGGKPCSVDITTDGWLKKPIRINFLCPISLKPGRCGEDGKGYKMTLPRGWSSKIGLALKIGVVVIAAASDTGEVAELPVPSTTVIASWAEENGRGPSSAERQGEMVNAAFDGLAGAVTDKWNDLIDSAFMDAEMEEGAPPPASAPLRKEVKNSYTN--LRSLVQKYDKGLKMTGLEKVTHRAEGRSTTTTTEWVHPSVAELFRREGPALF 2448
T+ +V +++ V +TRG L D+ G + P++VW+ D G + I+ W K ++I F+CP+S+K G G G+++TL + W K G+AL + + ++ A G A IA + + R + NA D L VT +D +A +E+GAP L K++ + LR +++++ + GL KV +S EWVHP E FR +G +L
Sbjct: 469 TKTAQSVEQIKAKLDEVVAKTRGQTRLLADLCSGT--TECPKLVWMARADPKG--LASWISPSAWYGKKVKIQFVCPVSMKVG----PGPGFELTLSKDWMKKYGVALNVSLGILRLAMQVGAAAM--GCHHCHIADMSVDRAR----------LKNA--DDLYAEVTKG----LDKDQQEA-LEKGAP------LGKQLAEASFQMLLRDIMKEHGEHPNF-GLVKVVC---DKSPNEGVEWVHPDCVEAFREKGLSLL 691 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig624.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig624.13.1 >prot_P-littoralis_Contig624.13.1 ID=prot_P-littoralis_Contig624.13.1|Name=mRNA_P-littoralis_Contig624.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=884bp MVGDGRAVKKYIKDGGDLEVRDEDGATALFHAAFWTHVEIAKELIHAGADback to top mRNA from alignment at P-littoralis_Contig624:75831..88531- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig624.13.1 ID=mRNA_P-littoralis_Contig624.13.1|Name=mRNA_P-littoralis_Contig624.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=12701bp|location=Sequence derived from alignment at P-littoralis_Contig624:75831..88531- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig624:75831..88531- >mRNA_P-littoralis_Contig624.13.1 ID=mRNA_P-littoralis_Contig624.13.1|Name=mRNA_P-littoralis_Contig624.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2652bp|location=Sequence derived from alignment at P-littoralis_Contig624:75831..88531- (Pylaiella littoralis U1_48)back to top |