mRNA_P-littoralis_Contig624.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig624.12.1
Unique NamemRNA_P-littoralis_Contig624.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: A0A6H5JE11_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE11_9PHAE)

HSP 1 Score: 455 bits (1170), Expect = 7.890e-140
Identity = 395/878 (44.99%), Postives = 448/878 (51.03%), Query Frame = 1 
Query:  343 MPSIRPLVPPARGLGLESSTPRTLSAAVDLSGVARRAVPSSPSTPL-GARFADT----QPVGNVSVSRALSSSQQEHPLTSCPLVAPSRQADSGGRSNGGRASTRRLAGGGGDSRRAPAVTNITAERRPARDRTALRAVSARLDAAATAIDAVEIGVRSAADSLDSLLQLLESRQESAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVTTERLSSGFAAXPXLAATERDVLPIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQRHNEERVNADERNCR----RANFATRYRADGSLEDLVANRDALLRGVNDELSSRSLRSAGNSLIVLSTPRPTPSSTGQGTARELLLGSTPPASQRHNEERVNAHERNCRRANFATRHGADGSLEYLVANRDALLRGVSNELSSPSLRSAGNSLIVLSTPRPAPSSTGQGTAEEAASGRSVEEQASRERHDVGRLTSSRA-----ADRGIE-TVEPEVTGPATVSRLNSPSILSTDARPHSRQTSESSRPSPRGMRASGSSSTLPVSNMEVAANPGRGLQQEMIELAMESIDEERGRLMLEIARLRGQQHQSLAHLRRLQREQLVVRQRQVSTLSAIVNSFGRTVEAASALPHGDNSSLGRISSDVVSTLRRMLRLLSATVPVVAPAGRSAGQLLASSPLSTTTATRPDGALPTPTSAQHPRSAARGRSAGDGPTGTYSVGGRVALRPTGVDLTQEVIDAALQALPRLAAAATVISDARRMQGYVAGLAGGAP------GAPEERRCCSTETIAALPDAPSCAAGVVEGDGGGGDDGLRGCVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQVPNIEAGSTATTT 2913
            M S RP+VP ARGL L+S  PRTLSA         RA  SS  TPL GA  ADT     P  +          +Q HP T+ PL  P+R     GRS+GGRAS RRLAGGG D+ R   V      R   RD TALRAVSARLDAA+TAIDAVEIGVRSA+DSLDSLLQLLESR   AV                                          +G      SS        AA   D    A                            AS   +      DE N      +     RY          ANRD                    + IV   P       G G +R  ++      +         A E  CR      R    G+ E  VA  D  +   +NE  S   RS  +    L+ PRP  S   Q   EE  S R   E+ + E H VG   S+ A     AD GI  T+E   T  A +  L S    S ++ P S + + S R SPRGM  +GS +             GRG     +   +  ID ERGRL+LEIARLRGQQ+QSL HL RLQ EQ VVRQRQVSTLS IVNSFGRTV AA+ALPHG++SSLGRISSDVVSTLRRMLRLLSATVP    A  + G     SP+ TTT++  DG  P   +   P +   G+ A  G  GTYSVGGRVALRP GVDLTQEVIDAALQALPRLAAAAT IS A RMQGY+A LAGG        G+    RCCS ETIAALPDA     G V G+  GGD  +RGCVICLSE     Q LCRLPCNHVFHRVCVGKWL MQDSCPTCRRQVPN+E GST  TT
Sbjct:    1 MSSTRPVVPTARGLELQSLIPRTLSA---------RASTSSLFTPLPGAGLADTPRSRSPPSSXXXXXXXQQDRQNHP-TAYPLRVPNRH----GRSDGGRASIRRLAGGGRDAWRTAPVAYSAVVRGTGRDTTALRAVSARLDAASTAIDAVEIGVRSASDSLDSLLQLLESRHGPAVSQTSLSSTSAEVDAFE--------------------------NGSADPGPSSRGIGEGGRAAASSDSQASAGAMSMRSPRSSVSPPAVSLPTSSGLMVGASSSESPR----DEFNVSTPPPQPMGPPRY----------ANRDG-------------------APIVARVPE------GGGGSRAAIMLRREQQAGLTAFSNPEAGEHLCRSPAVLPRQDG-GAQEGSVATGDTSI-DETNEEHSTRTRSGQHLTSALALPRPVSSPAVQELVEEVNSSRRTAERETSESHGVGMAGSATAGQHLPADIGIGGTMEAAPTDLAALRMLGSDRTTSLNSVPRSVREAGSRRASPRGMEGTGSGAASSTRETYAGETSGRGNVALPVR-ELNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAAALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQLAPGN----SPVLTTTSSVSDGTPPPAPNTPRPTAVREGQVA-SGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGGTSDTVGRGSDYTGRCCSKETIAALPDASQPVEGAV-GEVDGGD--VRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATT 788
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: D7FQ33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ33_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 1.980e-122
Identity = 273/481 (56.76%), Postives = 304/481 (63.20%), Query Frame = 1 
Query: 1519 GSLEYLVANRDALLRGVSNELSSPSLRSAGNSLIVLSTPRPAPSSTGQGTAEEAASGRSVEEQASRERHDVGRLTSSRA-----ADRGIE-TVEPEVTGPATVSRLNSPSILSTDARPHSRQTSESSRPSPRGMRASGSSSTLPVSNMEVAANPGRG---LQQEMIELAMESIDEERGRLMLEIARLRGQQHQSLAHLRRLQREQLVVRQRQVSTLSAIVNSFGRTVEAASALPHGDNSSLGRISSDVVSTLRRMLRLLSATVPVVAPAGRSAGQLLASSPLSTTTATRPDGALPTPTSAQHPRSAARGRSAGDGPTGTYSVGGRVALRPTGVDLTQEVIDAALQALPRLAAAATVISDARRMQGYVAGLAGGAPGAPEERR------CCSTETIAALPDAPSCAAGVV-EGDGGGGDDGLRGCVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQVPNIEAGSTATTT 2913
            G+ E  VA  DA +   +NE  S   RS  +    L+ PRP  S   Q   EE  S R   E+ + E H VG   S+ A     AD  I  T+E   T  A +  L S    S D+ P   + + S R SPRGM  +GS +             GRG   L    +E AM  ID ERGRL+LEIARLRGQQ+QSL HL RLQ EQ VVRQRQVSTLS IVNSFGRTV AA ALPHG++SSLGRISSDVVSTLRRMLRLLSATVP    A  + G     SP+ TTT++ PDGA P   +A  P +   G++A  G  GTYSVGGRVALRP GVDLTQEVIDAALQALPRLAAAAT IS A RMQGY+A LAGG       RR      CCS ETIAALPDA     G V E DGGG    +RGCVICLSE     Q LCRLPCNHVFHRVCVGKWL MQDSCPTCRRQVPN+E GST  TT
Sbjct:   86 GAQESSVATGDASI-DETNEEHSTRTRSGQHLTSALALPRPVSSPAAQELVEEVNSSRRTAERETSESHGVGMAGSATAGQHLPADIDIGGTMEAAPTDLAALRTLGSDRTPSLDSGPRLVREAGSRRASPRGMEGTGSGAASSTREANAGETSGRGDMALPVRELEAAMNGIDTERGRLILEIARLRGQQNQSLVHLHRLQHEQFVVRQRQVSTLSDIVNSFGRTVAAAGALPHGEDSSLGRISSDVVSTLRRMLRLLSATVPAATAAQSAPGN----SPVLTTTSSVPDGAPPPAPNAPRPAAVREGQAA-SGSAGTYSVGGRVALRPAGVDLTQEVIDAALQALPRLAAAATAISGASRMQGYLADLAGGEASDTAGRRSDYTGRCCSKETIAALPDASQPVEGAVGEVDGGG----VRGCVICLSENDTAGQHLCRLPCNHVFHRVCVGKWLSMQDSCPTCRRQVPNVEIGSTLATT 556
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: UPI001EEB320E (E3 ubiquitin-protein ligase MPSR1-like isoform X2 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEB320E)

HSP 1 Score: 61.6 bits (148), Expect = 2.860e-8
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 
Query: 2740 CVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQV 2877
            CVIC  E  +T     RLPCNH FH  C+GKWL +Q +CPTCR+ V
Sbjct:   15 CVICFEE-FITEYGCKRLPCNHKFHSQCIGKWLLVQKTCPTCRKNV 59
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: A0A7N0T830_KALFE (RING-type domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0T830_KALFE)

HSP 1 Score: 62.0 bits (149), Expect = 3.060e-8
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1 
Query: 2740 CVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQVP 2880
            C IC+ E  V  +L  R+PC HVFH +C+ KWLR+  SCPTCR  +P
Sbjct:   27 CAICMEEDQV--RLNSRMPCRHVFHTMCIEKWLRISSSCPTCRFAMP 71
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: A0A830CTD3_9LAMI (E3 ubiquitin-protein ligase sgr9 amyloplastic n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CTD3_9LAMI)

HSP 1 Score: 66.2 bits (160), Expect = 7.320e-8
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 1 
Query: 2590 VAGLAGGAPGAPEERRCCSTETIAALPDAPSCAAGVVEGDGGGGDDGLRGCVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQVP 2880
            V G   G+ G  EE    S   + ALP         VE  GGGG+     CVIC  E  V  + +C LPC H+FH VC+ +WLR  ++CP CRR++P
Sbjct:  172 VMGFGEGSKGGSEE--AASPAAVVALPS--------VEVVGGGGE-----CVICKEE-MVKGREVCELPCGHLFHWVCILRWLRKTNTCPCCRRRLP 252
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: UPI000B8D1B65 (E3 ubiquitin-protein ligase AIP2-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D1B65)

HSP 1 Score: 61.6 bits (148), Expect = 1.230e-7
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query: 2722 DDGLRGCVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCR 2868
            DDG   CVICL E     QL  R+PC+H++H +C+ KWL + ++CP+CR
Sbjct:   59 DDGEEQCVICLEELLYVTQLS-RMPCSHLYHSLCIAKWLTVHETCPSCR 106
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: UPI001EECD42C (E3 ubiquitin protein ligase RIE1-like isoform X1 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EECD42C)

HSP 1 Score: 61.6 bits (148), Expect = 1.300e-7
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 
Query: 2740 CVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQV 2877
            CVIC  E  +T     RLPCNH FH  C+GKWL +Q +CPTCR+ V
Sbjct:   71 CVICFEE-FITEYGCKRLPCNHKFHSQCIGKWLLVQKTCPTCRKNV 115
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: A0A2G9HZK3_9LAMI (Anaphase-promoting complex (APC), subunit 11 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HZK3_9LAMI)

HSP 1 Score: 65.5 bits (158), Expect = 1.500e-7
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 1 
Query: 2707 DGGGGDDGLRGCVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQVP 2880
            D GGGD   + C ICL E    A+   RLPC HVFH  C+G+WL     CP CRR++P
Sbjct:  231 DDGGGDSSEKSCSICLEEFRPRARAT-RLPCRHVFHEHCIGRWLAGNHVCPLCRRRLP 287
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: A0A2C9W1F2_MANES (RING-type domain-containing protein n=3 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9W1F2_MANES)

HSP 1 Score: 64.3 bits (155), Expect = 1.610e-7
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query: 2713 GGGDDGLRGCVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQV 2877
            G GD+    CVICL   S + + L ++ CNH+FH  C+  WL++Q+SCPTCRR++
Sbjct:  172 GDGDELSDDCVICLEGLSGSREALTKMTCNHIFHERCIFGWLKVQNSCPTCRREL 226
[Close]
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Match: UPI000B77DE7B (E3 ubiquitin-protein ligase RNF181-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B77DE7B)

HSP 1 Score: 62.0 bits (149), Expect = 3.700e-7
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1 
Query: 2740 CVICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQV 2877
            C ICL E S     L ++PC+H+FH  C+ +WL++++SCPTCRR++
Sbjct:  127 CAICLEELSGARFPLTKMPCSHIFHERCISRWLKVRNSCPTCRREL 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig624.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE11_9PHAE7.890e-14044.99RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FQ33_ECTSI1.980e-12256.76RING-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI001EEB320E2.860e-856.52E3 ubiquitin-protein ligase MPSR1-like isoform X2 ... [more]
A0A7N0T830_KALFE3.060e-853.19RING-type domain-containing protein n=1 Tax=Kalanc... [more]
A0A830CTD3_9LAMI7.320e-841.24E3 ubiquitin-protein ligase sgr9 amyloplastic n=1 ... [more]
UPI000B8D1B651.230e-748.98E3 ubiquitin-protein ligase AIP2-like n=1 Tax=Cari... [more]
UPI001EECD42C1.300e-756.52E3 ubiquitin protein ligase RIE1-like isoform X1 n... [more]
A0A2G9HZK3_9LAMI1.500e-750.00Anaphase-promoting complex (APC), subunit 11 n=1 T... [more]
A0A2C9W1F2_MANES1.610e-747.27RING-type domain-containing protein n=3 Tax=Maniho... [more]
UPI000B77DE7B3.700e-747.83E3 ubiquitin-protein ligase RNF181-like n=1 Tax=He... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig624contigP-littoralis_Contig624:70361..74243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ33
PFAMszf-RING_2
Model size3883
Max annot lvl2759|Eukaryota
KEGG koko:K16274
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.07e-126
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
Cds size2880
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791302.057862-UTR-P-littoralis_Contig624:70360..704051680791302.057862-UTR-P-littoralis_Contig624:70360..70405Pylaiella littoralis U1_48UTRP-littoralis_Contig624 70361..70405 +
1680791302.0811336-UTR-P-littoralis_Contig624:73285..742431680791302.0811336-UTR-P-littoralis_Contig624:73285..74243Pylaiella littoralis U1_48UTRP-littoralis_Contig624 73286..74243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791302.0711322-CDS-P-littoralis_Contig624:70405..732851680791302.0711322-CDS-P-littoralis_Contig624:70405..73285Pylaiella littoralis U1_48CDSP-littoralis_Contig624 70406..73285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig624.12.1prot_P-littoralis_Contig624.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig624 70406..73285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig624.12.1

>prot_P-littoralis_Contig624.12.1 ID=prot_P-littoralis_Contig624.12.1|Name=mRNA_P-littoralis_Contig624.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=960bp
MPGRLNSHRLMPGSSSTSLGNPLAERDGTSASSTTRRSTDVYTRARAEGA
RMSRSISSGGDVATPSHGTRTGTDIYSRARAEGARMCRSMSSRSQRAASM
PSIRPLVPPARGLGLESSTPRTLSAAVDLSGVARRAVPSSPSTPLGARFA
DTQPVGNVSVSRALSSSQQEHPLTSCPLVAPSRQADSGGRSNGGRASTRR
LAGGGGDSRRAPAVTNITAERRPARDRTALRAVSARLDAAATAIDAVEIG
VRSAADSLDSLLQLLESRQESAVTTPPATTSSSSRGRGSSAEEASTSASL
TTAAVVLASADGGPVSGVTTERLSSGFAASPPLAATERDVLPIAASRGGE
GGGGLRAANMLRRELLLGSTPPASQRHNEERVNADERNCRRANFATRYRA
DGSLEDLVANRDALLRGVNDELSSRSLRSAGNSLIVLSTPRPTPSSTGQG
TARELLLGSTPPASQRHNEERVNAHERNCRRANFATRHGADGSLEYLVAN
RDALLRGVSNELSSPSLRSAGNSLIVLSTPRPAPSSTGQGTAEEAASGRS
VEEQASRERHDVGRLTSSRAADRGIETVEPEVTGPATVSRLNSPSILSTD
ARPHSRQTSESSRPSPRGMRASGSSSTLPVSNMEVAANPGRGLQQEMIEL
AMESIDEERGRLMLEIARLRGQQHQSLAHLRRLQREQLVVRQRQVSTLSA
IVNSFGRTVEAASALPHGDNSSLGRISSDVVSTLRRMLRLLSATVPVVAP
AGRSAGQLLASSPLSTTTATRPDGALPTPTSAQHPRSAARGRSAGDGPTG
TYSVGGRVALRPTGVDLTQEVIDAALQALPRLAAAATVISDARRMQGYVA
GLAGGAPGAPEERRCCSTETIAALPDAPSCAAGVVEGDGGGGDDGLRGCV
ICLSEGSVTAQLLCRLPCNHVFHRVCVGKWLRMQDSCPTCRRQVPNIEAG
STATTTPAV*
back to top

mRNA from alignment at P-littoralis_Contig624:70361..74243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig624.12.1 ID=mRNA_P-littoralis_Contig624.12.1|Name=mRNA_P-littoralis_Contig624.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3883bp|location=Sequence derived from alignment at P-littoralis_Contig624:70361..74243+ (Pylaiella littoralis U1_48)
GGCTCGCCGCTGGTCAACGGGTTTGGGGCCTCAACTGCTGTTCTTATGCC
TGGACGCCTCAACAGCCACCGGCTCATGCCGGGAAGCAGTTCTACGAGCT
TAGGCAACCCTCTTGCAGAACGCGATGGTACCTCAGCCTCCTCCACCACA
CGAAGAAGTACAGATGTATATACTCGTGCACGTGCCGAAGGCGCTCGCAT
GAGCAGAAGCATCAGCAGCGGCGGCGATGTTGCCACGCCCTCCCATGGGA
CGCGGACAGGCACGGACATATACAGTCGTGCGCGTGCCGAAGGCGCTCGC
ATGTGCAGAAGCATGAGCAGCCGGAGCCAGAGAGCAGCATCCATGCCTTC
GATCCGTCCCCTGGTTCCCCCCGCACGCGGGCTGGGGCTGGAGAGCTCGA
CACCTCGGACTCTCTCTGCTGCTGTAGATCTATCTGGTGTTGCGAGGAGA
GCGGTGCCATCGTCGCCGTCCACTCCTCTCGGGGCCCGCTTTGCGGACAC
GCAACCCGTAGGGAACGTGAGTGTATCTCGGGCTTTGTCTTCGTCGCAGC
AGGAGCACCCTCTCACGAGCTGCCCGCTTGTAGCTCCCTCCCGCCAAGCA
GATAGCGGAGGAAGGTCGAACGGTGGCCGCGCTAGCACGCGTCGTCTGGC
CGGCGGCGGTGGGGACTCGCGGCGGGCACCGGCGGTAACAAATATCACAG
CCGAGAGGAGGCCGGCGCGAGATAGGACGGCGCTGAGGGCGGTGTCGGCC
AGGTTGGATGCGGCCGCGACAGCAATAGACGCCGTGGAGATAGGGGTGAG
GTCGGCGGCTGACAGCCTGGATTCTCTGCTGCAACTGTTGGAATCCCGGC
AGGAATCAGCTGTAACAACACCGCCCGCTACCACCAGCAGTAGTAGTCGC
GGGAGAGGTTCGTCGGCCGAAGAAGCATCGACGTCGGCCTCGCTGACAAC
TGCGGCCGTGGTTCTTGCGTCCGCTGATGGTGGGCCGGTATCTGGAGTCA
CAACAGAGCGCTTGTCGAGCGGATTCGCCGCGTCGCCCCCTTTGGCTGCT
ACCGAGAGGGATGTGTTGCCCATCGCCGCTTCCCGCGGGGGAGAAGGCGG
AGGAGGGTTGCGTGCGGCCAACATGCTACGGAGGGAGCTTTTATTAGGCT
CGACTCCTCCAGCCAGCCAACGGCATAACGAAGAGCGAGTCAACGCGGAC
GAACGCAATTGCCGAAGGGCTAATTTTGCGACGCGGTACCGGGCTGATGG
TTCCCTGGAAGACCTGGTCGCCAACAGAGATGCATTGCTACGAGGAGTCA
ACGATGAGCTAAGCAGCCGGTCGTTGAGGTCTGCGGGAAACTCGCTCATC
GTCCTTTCGACACCGAGACCCACACCCTCGTCAACGGGACAAGGAACCGC
GAGGGAGCTTTTATTAGGCTCGACTCCTCCAGCCAGCCAACGACATAACG
AAGAGCGAGTCAACGCGCACGAACGCAATTGCCGAAGGGCTAATTTTGCG
ACACGGCACGGGGCTGATGGTTCCCTAGAATACCTGGTCGCCAACAGAGA
TGCATTGCTACGAGGAGTCAGCAATGAGCTCAGCAGCCCGTCGTTGAGGT
CTGCGGGGAACTCGCTCATCGTCCTTTCGACACCGAGACCCGCACCCTCG
TCAACGGGACAAGGAACCGCCGAAGAAGCCGCTAGCGGTCGAAGTGTAGA
GGAACAAGCGAGCAGGGAGCGCCATGATGTGGGTAGACTAACAAGTAGCC
GCGCGGCAGACCGAGGCATAGAGACAGTAGAACCGGAGGTCACCGGCCCC
GCTACCGTGAGTCGACTCAATAGCCCCAGCATTTTATCTACCGACGCTCG
GCCTCACTCGAGGCAAACATCCGAAAGCAGCCGACCGTCACCGCGCGGAA
TGAGAGCATCAGGAAGCAGTTCCACCTTGCCAGTAAGTAATATGGAAGTC
GCAGCAAATCCCGGCCGTGGCCTGCAACAAGAAATGATAGAACTGGCCAT
GGAAAGTATTGACGAGGAGCGAGGCAGACTCATGCTGGAAATCGCGCGTC
TGCGCGGGCAGCAGCACCAATCACTGGCCCACCTCCGACGTCTCCAGCGC
GAGCAGCTTGTCGTGCGGCAGCGGCAGGTGTCCACCCTGTCCGCCATTGT
CAACAGCTTTGGTCGCACGGTGGAGGCGGCAAGCGCGCTTCCTCACGGAG
ACAACTCCTCCCTTGGACGCATCAGCAGCGACGTCGTGTCAACCCTGCGG
CGAATGCTCCGCCTCTTGTCTGCGACGGTCCCCGTCGTGGCACCCGCAGG
AAGGTCGGCCGGCCAACTCCTCGCAAGCTCACCTCTGTCGACGACGACTG
CCACAAGACCCGATGGTGCGCTTCCCACCCCAACCAGTGCGCAGCACCCC
CGTAGTGCTGCACGAGGAAGATCTGCAGGAGACGGCCCCACCGGCACGTA
CTCCGTTGGGGGTCGGGTGGCGTTACGACCCACCGGAGTGGACCTCACGC
AAGAAGTGATCGACGCCGCTCTTCAGGCGCTGCCGCGGCTAGCAGCTGCG
GCGACGGTGATATCAGATGCACGCCGCATGCAGGGTTACGTTGCAGGCCT
GGCCGGTGGTGCCCCCGGTGCTCCCGAGGAGCGTCGCTGTTGCTCGACGG
AGACTATCGCCGCGCTTCCGGATGCCCCTTCGTGCGCCGCGGGGGTCGTT
GAAGGAGACGGCGGCGGCGGTGACGATGGACTTCGGGGGTGCGTAATCTG
CCTGTCGGAGGGCAGCGTGACAGCACAGCTGCTCTGCCGCCTCCCTTGCA
ACCACGTGTTCCACAGGGTTTGTGTTGGGAAGTGGCTCAGGATGCAGGAC
TCTTGTCCGACCTGCAGGAGGCAAGTGCCGAACATTGAGGCTGGCTCTAC
TGCAACGACGACTCCAGCGGTCTAGACGATTCATCGGGTTTGTTCGAGAT
CAATTTTAGTGCGGGTAGTCTTCGTTCTTATACGTACGGCATCGTGGTTT
GCGTGTGTCGCATGTGTTGGCGTTGTGTGCGCTCGATTGTATCTGTCGTG
TTCTTTTGTTGATCGCTTTTGGAGTGAGAGGTGACGCCGGTGACCGCTTC
TGGTGCCACACCAGCTGTACCATGTTGTGATATGGGTATCCTCACGGGCG
AGTTAGAATGTGACGCTCGATACACTGCTGTATACCGGTATTGTCGAAGG
CGTGCGGGTCGTGCCGCGTGCTTTTCCCTCAGCGTTTTTTCTTAGTTCTT
AGGCTAACGCGACGTCTGTGTGACGCAGTTTGTCTTTGAACGCAGAAAGA
CGGGCTGGACATGACGCCAATCAATGTGATATGATGTACATTGATGTGCG
AAGTCGTGAAGCATAACGAAGTGTGGTCTGATGCCATCGCACACAGAGCG
ACTAAAATAAACAGAACAACAGAGAGCGGTGGGCGTAACGCAAACGTCAT
GCCCAAGCAATCATAGCCGCCGCCGGCGGATGGATGTGGTGCAGGCACTG
TTCCGCGAGCGAACAATATGTAGATATCCTGCGGCAGCTAATTCAGACAG
ACATACAGACGCTGTTGTTCTGCAAGATCGCACCCACCCGCGGAGCGTTT
TCTGGGTTTGTTTGTCGACTAGAGTTAGTTGTGAATCAACTTGAAAAGTG
CTGATTATTTGATATGATGATTGATTAATTAGACTACATACATGACGTCA
ACAATTATCTCAACGCACCTCGAAATTTTCAAATATTATTCGAGTATTTT
TGTTACTCTTCTGGTGACTTTCTTGTTGATTTTGATTTTCTTTATGTGAC
CTGGCTCTGGACCTGGCTCCCCTTTTCTTGTTCTATTTTTGTACAGCGTT
GTGTGATTCCTCGGGGTCCGTTTTTGTTTTTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig624:70361..74243+

>mRNA_P-littoralis_Contig624.12.1 ID=mRNA_P-littoralis_Contig624.12.1|Name=mRNA_P-littoralis_Contig624.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2880bp|location=Sequence derived from alignment at P-littoralis_Contig624:70361..74243+ (Pylaiella littoralis U1_48)
ATGCCTGGACGCCTCAACAGCCACCGGCTCATGCCGGGAAGCAGTTCTAC
GAGCTTAGGCAACCCTCTTGCAGAACGCGATGGTACCTCAGCCTCCTCCA
CCACACGAAGAAGTACAGATGTATATACTCGTGCACGTGCCGAAGGCGCT
CGCATGAGCAGAAGCATCAGCAGCGGCGGCGATGTTGCCACGCCCTCCCA
TGGGACGCGGACAGGCACGGACATATACAGTCGTGCGCGTGCCGAAGGCG
CTCGCATGTGCAGAAGCATGAGCAGCCGGAGCCAGAGAGCAGCATCCATG
CCTTCGATCCGTCCCCTGGTTCCCCCCGCACGCGGGCTGGGGCTGGAGAG
CTCGACACCTCGGACTCTCTCTGCTGCTGTAGATCTATCTGGTGTTGCGA
GGAGAGCGGTGCCATCGTCGCCGTCCACTCCTCTCGGGGCCCGCTTTGCG
GACACGCAACCCGTAGGGAACGTGAGTGTATCTCGGGCTTTGTCTTCGTC
GCAGCAGGAGCACCCTCTCACGAGCTGCCCGCTTGTAGCTCCCTCCCGCC
AAGCAGATAGCGGAGGAAGGTCGAACGGTGGCCGCGCTAGCACGCGTCGT
CTGGCCGGCGGCGGTGGGGACTCGCGGCGGGCACCGGCGGTAACAAATAT
CACAGCCGAGAGGAGGCCGGCGCGAGATAGGACGGCGCTGAGGGCGGTGT
CGGCCAGGTTGGATGCGGCCGCGACAGCAATAGACGCCGTGGAGATAGGG
GTGAGGTCGGCGGCTGACAGCCTGGATTCTCTGCTGCAACTGTTGGAATC
CCGGCAGGAATCAGCTGTAACAACACCGCCCGCTACCACCAGCAGTAGTA
GTCGCGGGAGAGGTTCGTCGGCCGAAGAAGCATCGACGTCGGCCTCGCTG
ACAACTGCGGCCGTGGTTCTTGCGTCCGCTGATGGTGGGCCGGTATCTGG
AGTCACAACAGAGCGCTTGTCGAGCGGATTCGCCGCGTCGCCCCCTTTGG
CTGCTACCGAGAGGGATGTGTTGCCCATCGCCGCTTCCCGCGGGGGAGAA
GGCGGAGGAGGGTTGCGTGCGGCCAACATGCTACGGAGGGAGCTTTTATT
AGGCTCGACTCCTCCAGCCAGCCAACGGCATAACGAAGAGCGAGTCAACG
CGGACGAACGCAATTGCCGAAGGGCTAATTTTGCGACGCGGTACCGGGCT
GATGGTTCCCTGGAAGACCTGGTCGCCAACAGAGATGCATTGCTACGAGG
AGTCAACGATGAGCTAAGCAGCCGGTCGTTGAGGTCTGCGGGAAACTCGC
TCATCGTCCTTTCGACACCGAGACCCACACCCTCGTCAACGGGACAAGGA
ACCGCGAGGGAGCTTTTATTAGGCTCGACTCCTCCAGCCAGCCAACGACA
TAACGAAGAGCGAGTCAACGCGCACGAACGCAATTGCCGAAGGGCTAATT
TTGCGACACGGCACGGGGCTGATGGTTCCCTAGAATACCTGGTCGCCAAC
AGAGATGCATTGCTACGAGGAGTCAGCAATGAGCTCAGCAGCCCGTCGTT
GAGGTCTGCGGGGAACTCGCTCATCGTCCTTTCGACACCGAGACCCGCAC
CCTCGTCAACGGGACAAGGAACCGCCGAAGAAGCCGCTAGCGGTCGAAGT
GTAGAGGAACAAGCGAGCAGGGAGCGCCATGATGTGGGTAGACTAACAAG
TAGCCGCGCGGCAGACCGAGGCATAGAGACAGTAGAACCGGAGGTCACCG
GCCCCGCTACCGTGAGTCGACTCAATAGCCCCAGCATTTTATCTACCGAC
GCTCGGCCTCACTCGAGGCAAACATCCGAAAGCAGCCGACCGTCACCGCG
CGGAATGAGAGCATCAGGAAGCAGTTCCACCTTGCCAGTAAGTAATATGG
AAGTCGCAGCAAATCCCGGCCGTGGCCTGCAACAAGAAATGATAGAACTG
GCCATGGAAAGTATTGACGAGGAGCGAGGCAGACTCATGCTGGAAATCGC
GCGTCTGCGCGGGCAGCAGCACCAATCACTGGCCCACCTCCGACGTCTCC
AGCGCGAGCAGCTTGTCGTGCGGCAGCGGCAGGTGTCCACCCTGTCCGCC
ATTGTCAACAGCTTTGGTCGCACGGTGGAGGCGGCAAGCGCGCTTCCTCA
CGGAGACAACTCCTCCCTTGGACGCATCAGCAGCGACGTCGTGTCAACCC
TGCGGCGAATGCTCCGCCTCTTGTCTGCGACGGTCCCCGTCGTGGCACCC
GCAGGAAGGTCGGCCGGCCAACTCCTCGCAAGCTCACCTCTGTCGACGAC
GACTGCCACAAGACCCGATGGTGCGCTTCCCACCCCAACCAGTGCGCAGC
ACCCCCGTAGTGCTGCACGAGGAAGATCTGCAGGAGACGGCCCCACCGGC
ACGTACTCCGTTGGGGGTCGGGTGGCGTTACGACCCACCGGAGTGGACCT
CACGCAAGAAGTGATCGACGCCGCTCTTCAGGCGCTGCCGCGGCTAGCAG
CTGCGGCGACGGTGATATCAGATGCACGCCGCATGCAGGGTTACGTTGCA
GGCCTGGCCGGTGGTGCCCCCGGTGCTCCCGAGGAGCGTCGCTGTTGCTC
GACGGAGACTATCGCCGCGCTTCCGGATGCCCCTTCGTGCGCCGCGGGGG
TCGTTGAAGGAGACGGCGGCGGCGGTGACGATGGACTTCGGGGGTGCGTA
ATCTGCCTGTCGGAGGGCAGCGTGACAGCACAGCTGCTCTGCCGCCTCCC
TTGCAACCACGTGTTCCACAGGGTTTGTGTTGGGAAGTGGCTCAGGATGC
AGGACTCTTGTCCGACCTGCAGGAGGCAAGTGCCGAACATTGAGGCTGGC
TCTACTGCAACGACGACTCCAGCGGTCTAG
back to top