mRNA_P-littoralis_Contig624.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig624.2.1
Unique NamemRNA_P-littoralis_Contig624.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig624.2.1 vs. uniprot
Match: A0A6H5JNX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 1.030e-111
Identity = 178/228 (78.07%), Postives = 195/228 (85.53%), Query Frame = 2 
Query:  119 MASGLLTARSACRGCLVLLGAAAVATHAFFVAP-CSLQARAR--AGAP-ERPHRVRARASISMVIPPAEWGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPYFGDMKQFIDNEGLTMLPAETELLERDMQMERRARAKARKERFPDEPDEDLVDDTLEDVPVVDDIEVGVIDVPPPPVDFDDNDGYDDGYDSDPGIAG 790
            M  GL+ ARS+CR CL+L+ A+A  T AFFV   C LQAR    A AP ER  R RAR+ +SM+IPPAE GYVTEAYDDFPDYVPNMGAWGESKPG+TPEAYPADSLDLD FWNGGAEAVDFHDIPVVDRP F +MKQFIDNEGLTMLP+ETELLERD+Q ERRARAKARKERF DEPDEDLVDDTL+D+P+ D+IEVGVIDVPPPPVDFDD+DGYDDGYD D G  G
Sbjct:    1 MTRGLVNARSSCRSCLLLVAASAATTQAFFVGGRCPLQARGARTAAAPAERQCRTRARSGLSMIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDMGGLG 228
[Close]
BLAST of mRNA_P-littoralis_Contig624.2.1 vs. uniprot
Match: D7FQ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 2.240e-98
Identity = 148/167 (88.62%), Postives = 157/167 (94.01%), Query Frame = 2 
Query:  293 MVIPPAEWGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPYFGDMKQFIDNEGLTMLPAETELLERDMQMERRARAKARKERFPDEPDEDLVDDTLEDVPVVDDIEVGVIDVPPPPVDFDDNDGYDDGYDSDPGIAGG 793
            M+IPPAE GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRP F +MKQFIDNEGLTMLP+ETELLERD+Q ERRARAKARKERF DEPDEDLVDDTL+D+P+ D+IEVGVIDVPPPPVDFDD+DGYDDGYD D G  GG
Sbjct:    1 MIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGG 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig624.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNX0_9PHAE1.030e-11178.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ37_ECTSI2.240e-9888.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig624contigP-littoralis_Contig624:17156..22388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size993
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007610.1
Cds size693
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig624.2.1prot_P-littoralis_Contig624.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig624 17338..22270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791301.385802-UTR-P-littoralis_Contig624:17155..173371680791301.385802-UTR-P-littoralis_Contig624:17155..17337Pylaiella littoralis U1_48UTRP-littoralis_Contig624 17156..17337 -
1680791301.4517584-UTR-P-littoralis_Contig624:22270..223881680791301.4517584-UTR-P-littoralis_Contig624:22270..22388Pylaiella littoralis U1_48UTRP-littoralis_Contig624 22271..22388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791301.398849-CDS-P-littoralis_Contig624:17337..175081680791301.398849-CDS-P-littoralis_Contig624:17337..17508Pylaiella littoralis U1_48CDSP-littoralis_Contig624 17338..17508 -
1680791301.408805-CDS-P-littoralis_Contig624:18500..186041680791301.408805-CDS-P-littoralis_Contig624:18500..18604Pylaiella littoralis U1_48CDSP-littoralis_Contig624 18501..18604 -
1680791301.4190302-CDS-P-littoralis_Contig624:19928..200601680791301.4190302-CDS-P-littoralis_Contig624:19928..20060Pylaiella littoralis U1_48CDSP-littoralis_Contig624 19929..20060 -
1680791301.432842-CDS-P-littoralis_Contig624:20904..209961680791301.432842-CDS-P-littoralis_Contig624:20904..20996Pylaiella littoralis U1_48CDSP-littoralis_Contig624 20905..20996 -
1680791301.4423814-CDS-P-littoralis_Contig624:22076..222701680791301.4423814-CDS-P-littoralis_Contig624:22076..22270Pylaiella littoralis U1_48CDSP-littoralis_Contig624 22077..22270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig624.2.1

>prot_P-littoralis_Contig624.2.1 ID=prot_P-littoralis_Contig624.2.1|Name=mRNA_P-littoralis_Contig624.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=231bp
MASGLLTARSACRGCLVLLGAAAVATHAFFVAPCSLQARARAGAPERPHR
VRARASISMVIPPAEWGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPA
DSLDLDAFWNGGAEAVDFHDIPVVDRPYFGDMKQFIDNEGLTMLPAETEL
LERDMQMERRARAKARKERFPDEPDEDLVDDTLEDVPVVDDIEVGVIDVP
PPPVDFDDNDGYDDGYDSDPGIAGGDSEMY*
back to top

mRNA from alignment at P-littoralis_Contig624:17156..22388-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig624.2.1 ID=mRNA_P-littoralis_Contig624.2.1|Name=mRNA_P-littoralis_Contig624.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5233bp|location=Sequence derived from alignment at P-littoralis_Contig624:17156..22388- (Pylaiella littoralis U1_48)
GCAGAGCAGAGAGACCGAGATCGAGGGCTGCCAGGCTTGACCAGCGAGTG
TAAGCACTGGGCCAGGACCCTGTTGGAGAAGGACTTGAAACTGGGTCCGC
AATTGCGGAAGACTCACCATGGCTTCAGGCTTGTTGACCGCGAGGTCAGC
CTGTCGGGGGTGCTTGGTGCTGCTGGGTGCTGCGGCTGTGGCAACGCATG
CCTTTTTCGTTGCACCTTGTTCTCTTCAGGCGAGGGCGAGAGCGGGAGCA
CCCGAACGACCACATAGAGTAAGAGCACGAGCGAGTATTTCCATGGTCAT
CCCGCCCGCAGAGTGAGTTGGAGGGTTTCAACTGGTTTGGTTCGCATCTC
TCTCAATCTTAGGAGATAGAGTTTCACTTCGTAGTACTTTCAACTCAGGG
CGCACGTAAGACATGAGGCAAGAGCCGACGGTTGTGGATTCGCTACATCA
CGGCGCAATAATAGGACGAACCGGGCGTAACGAGCTGCAGCAGCAGCAGG
TCTCGGAGTGTGCCGGTTTCAACCTAGCTTCTTCGCGTTGCACAAATTGT
ACACAGCAGTAGTACTGCTGTGGTTGAATTGAAGCTCTCCCTCACGTACC
ACCCCCCTTGTATCACATCATACGGCGGCATTGGCAGCAGTGTTGATACT
CCAGCTGCTGACTCTAGCAGTCGCCACAGCCCCAGAAGTCATGTTCAACG
GTTACAATGGCCCTCCCTGACTTCTTGAAGCCCACGAGTGTCACTAGGGC
GAAAATATCCCACTCAGTGCGTAGAGTAGGAGACTGAAGGTAGGCCAAGA
TGTAGGTACGATATAGCAGCGCATATCGTTGATGTCCCCCGAGGGTATTT
TACTGGTGAACGAGTTCAAGTACGGCGCGGTTTTCTAGTTCGCTTCAGTT
CCTGGTTCAGAGGTCACAGAAACAAGCTTGTACTTACATGCTTTTAAGAA
CTCCGTCAGGTCACTGCACTAGGAATGTTGTACTGTGCGGACTACTGGTA
CACGAGCACCAGATAGTGTTGTGGGCTTGTCTCTAGACTTTATATTTTAC
GACCATCCGCTGCAACGAGTTTGCAGCAGTACTGCTGTCAGATGCACTCT
ATTTTCCTCGGTACCCGTGTCGGTAGTGAAGCCATATTCTGGGTCTACTC
CAGGTATCACCAGGTACCTACGGTAAATAGTGCGGTTGCCTGATGAAGGG
GTTCGTCTTACAACATTTTCACGTGGCACGATACAGGTACCTCTTGGAGA
GTATGATCTAGAGTATTGGTGATGTATCTTCTCTGTGCTCTGCAGAGCAA
GTCTTGTTGTTTTGACATCGTGCTCCAGCACTACCACCACCACCGCCATC
ACCACAATCACCACCACCACAATCACCATTTGCCCGTCGCAGATGGGGAT
ACGTTACTGAAGCCTACGACGACTTCCCAGACTACGTCCCCAATATGGGT
GCATGGGGAGAGTCGAAGCCGGGAAATACTCCGGGTGAGATGGAGAGAGA
GAGAGAGTGAGGGGGCGCGGTACAGGTCTGAGGGCGTTGTCTACAGCAGT
GCACTTTGCTCACGTTGTATTTACGTGAGCGATCTCGGTGTGTTTACAGC
GAAGTCCGAAAACTTTTTTCCTTCTTCCTGTCTGTGGTGACCCCGGCTGG
TGGGCCCGACTTATACCGAAAGGTCAATACTGGCGTCCAAAACTAATGTG
ATTACCACACACGTCCGGTAATAGTCGAAGCGTTACTACTGTCCTTTTGG
CGTGGTTTTTGAACAGAGGCGTGGGGACGAGAGTCTTTTCGCTGTCGTAA
GGAACGCATATCCAAGTGCGTTTTTTTTCACGGTCTCATAGCCAAAACAT
GTTGACTTCAAGGCTCTGAGTGTCTTGTGTCTGGGAAACGAGCGCAAAAT
GCTCGATAAATCAATCATCACCGCCGATACCGCTGTAGCGAAGGTTGGAG
AGGGTAAATGTTTTGTGTGCACCATTAAGTATTTTGTCACAGGAAGTGTG
TTGCTTGACCGTTGCCCTCGTAGGCACTCTTCGGTGACCTGAGTGTGTCC
TGGAGTGCTTGGCTACAGTTTTGCGTTGGTGTCTCGCTACGCGCGTGGCT
GTGTAAGTGTTTCGTTGATCGTGCATTCCAGAGCACGTAATCACAGCAGC
GCATTGGCCGCTCGCTGGTCTCGTCCAACCCAACCCAATTTGTACCACCT
CAACGCGACAAAGTCGAATACTGCGTTGGGGATTTTTTTAGTTAATTCAG
GACGTTGACAACTGTCATCACTTTGTGTGTGTCTATGTCGGTGTGTATGT
GACTTGTGTGTGCGTGTGGCCGGTTCAGAGGCCTACCCGGCGGACTCGCT
GGATCTAGATGCTTTCTGGAACGGGGGGGCGGAGGCGGTGGACTTTCACG
ACATTCCGGTCGTCGACCGGCCTTATTTCGGGGACATGAAGCAGTTTATC
GACAACGAAGGTGAGTTTTTTCATCCCCCAAGGCTGTTGGAACGAGTGGG
GCGGCTGTCAGGACATAGAAACGAATTGCGGCATGCGCCTCGAGTCAAAT
GTCTGTGGTTCGATGGTATTTGAAGGCCGGTCGGACACCCGGATCATTCT
TTCCTTGTGTGCATGGTAAGCGTCGAACCAGTCCATCAATATTTCAGGGT
AGGTTTAAGGCCGTCTGTCAAGAGAGTGCTTGCGGTGGTGTGTTCGTTCA
GTTCGTACACGTGGTTTTAAGGCCGTCTTTGTAGAGAGTGCTTGTGGTGG
TGTGCAAGTTCAATTCGCACACGAACCAGAGAAAGCGCATGTTTTTCACC
GTCGATAATTCTTTGCTAGCGTGTCGATGTATCCATACAGGGGCCCTCAG
CACTTCTATGACAACGTGCTGCGTTGATTCGTCTGTAAATGGCTTGTGTG
ACATACACCAGCAACAACAGCAATTCATCTGATGGGGTAAATCAATTTGA
GTCCAGAAGATAGAGCGTTTATTGTGAAGGTGACCTTCGAAAAGGTAAGA
TCTCCTCAACGTATGTCGAACACGACTTCCTCTTTTCACATCGGCGTCGA
CGAAGAGATCGTCTCACTAAAATGTCGGCTGGGACCCGGGCTCAAATCCC
GCCCACCAGCATAATTTTCTTGAACAACATAAGTCTATAAAAAAACATTA
TGAAAAAGAGAAAAATAAAAAAATATGGGAGAGACCGAAGGGAAAATGAA
TCAAACCGTGGAACGTTTTGAAGACGCGGCGCAAAAGGTGGTCGACCCGC
GCTTAAGAAAACACGTACTAGGTACAACAGAAGAACGTTAAGAAGAAGTA
AATTTGACACGCCGCCAGCCGTTTCGGGTTCCGGTTACCCGTGCAAGCAT
TCTCCTTCCTAGCGCACGAGAAAAATGGTAAAAAAAAAGGGGTGGGGGGG
CGGGAGGGGAGGGGGGGTAATGTGGAGGGGACACTCATAAAGTTAATACT
TATATCCCCAAACGCCTGTCGAGGACGATGCCCGCCCTTCACATGTTGTA
AAGATTTGGCGGGGGGGGGGTATGCTTGACACTTGCACAGTAATGAGTGA
TCTATTTCGGTACACACAGGAGTATCACAGCAGTACGATGCTTACGCAAG
GTTTATGCTTTGACCGACAGTAGTTCGGTCTGAGGATTGGAGCAGCGAGT
ACGCGGTGCTGCTGGTCAAACAGCAGTCAACTCAGTCGCTTCTCCTGTAA
TTGGCTTCTCAGTTACTCACTCACTCACGTTATCATGAACCTGTCGTTCA
CGGTGTCGTTCGTTGCCACCGCTTTCCTGTAAAGGGCTGACGATGCTGCC
AGCGGAGACGGAGCTGTTGGAGCGGGATATGCAGATGGAGCGGAGAGCGC
GCGCAAAGGCCAGAAAGGAGCGTTTTCCGGATGAACCGGTACGTGTGCTG
GTGGAAACTTTGAATTGGAATCACGCATTACGTATCAGCGGATGTGTGTA
CTGCGCGCAGTCGGGTATTTCGGCTTTCAAACGCCGCGAGACGAGCGACA
TGTGGCAATCTCTTTGCTCTTGTTGCAAATGGTATGCTGAAGTTGTCGTG
GTACTTTTGTGTTCAAGTTTGAAAGTAATAGTCAAGCCTTGAAGTGCAAA
CGGGATGAGCCATGTTGGGGCGGTGTAGACAGATGTCAACTCCGAACCCT
TCTTTACTTGGGAAGCTCTTTGACGTCAGAGCATACACTCTGTGAACGGC
TTTTATGACTATGGTTCCGCGGGACCAAGCTTCTAGCGTGCTCCGATTCG
AACGCTTGGACACGGTAGCGAGGATCTGTGCAGCGGTGGTTTTTGCTCAT
TTAACAGTGGATTCGGGTCTGAACATGCCGTTAGAGACTCCACGAAACCT
CGCTTTCAGTTCAATCAAACGCCTTATAAAGTTGATGGGGCATAAAGAGC
ATGGACCTCACTAGTAGTCGTACTTATCTGGTGGCCGGTCATTGAGCTTG
GGTTTTTCACTTGTAAAAAAAGAGTGTTCAAGCTGTTGTTGGTTCCTCGT
CGATTGTCGTCCTATTGTAGAACGAAATATCTTGACACTTTTTTTTATAT
GGCTGGTACTCCCGCCCCGGAATGTGCGCGATTTGACTCATTTCGTGAAC
GTATGATATCGGATTCACGTCACCGTCGTTCGTGCGGGCGCGTGCTGCAT
GCCTCCTTGTATGTTTTCCGTGGGCGAAACCTTCGCGCAACTTTGTTCGT
TGCACCTCTCGTGCGGCCCGTTTACCGATGTGTATGCTCGCTCGCACCTC
GTGCATTCTCATCCTTATCGTATTACACCATGTACGCCGTCGCAAAACGT
GATTGTCGTACCAATACATTTATCGTCGTCGCACACTTTCCTGAAAAAAA
AAATTCGAAACGTGTTTGATCGGCACACAGGATGAGGATCTGGTGGACGA
TACGCTGGAAGATGTTCCCGTCGTAGACGACATCGAGGTCGGTGTCATTG
ACGTCCCGCCCCCGCCCGTAGATTTCGACGACAACGACGGTTACGACGAC
GGCTACGATTCGGACCCGGGCATTGCAGGGGGAGACAGCGAAATGTACTA
AATAAATATGGCCGTTTGTAGCGGCGATGTTCCTTCTTTTCAACCTCTTT
TTTTGGTTGGTTTGGAATCGGCGGCATTCGAATCTGAGATGGGTGCTTTG
AACAACGGATGTTGAGTCAATTTCCCATGTTATGTTTGTTTTGTCAAGTT
GTCTTGTGTTTGATAAATCTCATGGCTTCGTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig624:17156..22388-

>mRNA_P-littoralis_Contig624.2.1 ID=mRNA_P-littoralis_Contig624.2.1|Name=mRNA_P-littoralis_Contig624.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig624:17156..22388- (Pylaiella littoralis U1_48)
ATGGCTTCAGGCTTGTTGACCGCGAGGTCAGCCTGTCGGGGGTGCTTGGT
GCTGCTGGGTGCTGCGGCTGTGGCAACGCATGCCTTTTTCGTTGCACCTT
GTTCTCTTCAGGCGAGGGCGAGAGCGGGAGCACCCGAACGACCACATAGA
GTAAGAGCACGAGCGAGTATTTCCATGGTCATCCCGCCCGCAGAATGGGG
ATACGTTACTGAAGCCTACGACGACTTCCCAGACTACGTCCCCAATATGG
GTGCATGGGGAGAGTCGAAGCCGGGAAATACTCCGGAGGCCTACCCGGCG
GACTCGCTGGATCTAGATGCTTTCTGGAACGGGGGGGCGGAGGCGGTGGA
CTTTCACGACATTCCGGTCGTCGACCGGCCTTATTTCGGGGACATGAAGC
AGTTTATCGACAACGAAGGGCTGACGATGCTGCCAGCGGAGACGGAGCTG
TTGGAGCGGGATATGCAGATGGAGCGGAGAGCGCGCGCAAAGGCCAGAAA
GGAGCGTTTTCCGGATGAACCGGATGAGGATCTGGTGGACGATACGCTGG
AAGATGTTCCCGTCGTAGACGACATCGAGGTCGGTGTCATTGACGTCCCG
CCCCCGCCCGTAGATTTCGACGACAACGACGGTTACGACGACGGCTACGA
TTCGGACCCGGGCATTGCAGGGGGAGACAGCGAAATGTACTAA
back to top