mRNA_P-littoralis_Contig624.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig624.10.1
Unique NamemRNA_P-littoralis_Contig624.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig624.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig624contigP-littoralis_Contig624:64559..65047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size491
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791301.2696364-UTR-P-littoralis_Contig624:64558..646421680791301.2696364-UTR-P-littoralis_Contig624:64558..64642Pylaiella littoralis U1_48UTRP-littoralis_Contig624 64559..64642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791301.281089-CDS-P-littoralis_Contig624:64642..650471680791301.281089-CDS-P-littoralis_Contig624:64642..65047Pylaiella littoralis U1_48CDSP-littoralis_Contig624 64643..65047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig624.10.1prot_P-littoralis_Contig624.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig624 64643..65047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig624.10.1

>prot_P-littoralis_Contig624.10.1 ID=prot_P-littoralis_Contig624.10.1|Name=mRNA_P-littoralis_Contig624.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MPGWNDDAFGEPRRRSRSRINSSLAVTRNAALSRVDLTTLSSLGNSTTAV
IVPPAGSQQSPSRLTSGGKDHPARKGPATEGRSPMAAGRPGNSCGSGRGF
GVSTPVAAAAAAAAAAAAAAAAATPAAVPDGPAVG
back to top

mRNA from alignment at P-littoralis_Contig624:64559..65047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig624.10.1 ID=mRNA_P-littoralis_Contig624.10.1|Name=mRNA_P-littoralis_Contig624.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig624:64559..65047+ (Pylaiella littoralis U1_48)
CTTGGACTTGCGCAGGCAGCCAGCAGGAGCTGGACCTGGCTACCTTGCCT
GTGAGATTGCGAGCTGCGAGGTACCACGGCGAGCATGCCAGGATGGAACG
ATGATGCATTCGGGGAGCCCCGTCGACGCTCTAGGTCCAGAATCAACAGC
TCCCTTGCGGTGACCCGGAACGCAGCTCTCAGTCGGGTTGATCTCACAAC
GCTTTCGTCGCTAGGAAACAGCACTACAGCGGTAATTGTGCCGCCTGCTG
GTTCACAGCAGTCACCATCCCGTTTGACCAGCGGGGGCAAGGACCACCCG
GCGAGGAAAGGACCAGCTACAGAGGGCCGTTCTCCGATGGCTGCTGGCCG
ACCGGGCAACAGCTGTGGATCTGGCCGTGGCTTCGGAGTGTCGACACCTG
TAGCAGCGGCAGCGGCAGCGGCAGCAGCGGCGGCGGCAGCAGCAGCAGCA
GCAACTCCAGCAGCCGTACCGGATGGACCCGCCGTTGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig624:64559..65047+

>mRNA_P-littoralis_Contig624.10.1 ID=mRNA_P-littoralis_Contig624.10.1|Name=mRNA_P-littoralis_Contig624.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig624:64559..65047+ (Pylaiella littoralis U1_48)
ATGCCAGGATGGAACGATGATGCATTCGGGGAGCCCCGTCGACGCTCTAG
GTCCAGAATCAACAGCTCCCTTGCGGTGACCCGGAACGCAGCTCTCAGTC
GGGTTGATCTCACAACGCTTTCGTCGCTAGGAAACAGCACTACAGCGGTA
ATTGTGCCGCCTGCTGGTTCACAGCAGTCACCATCCCGTTTGACCAGCGG
GGGCAAGGACCACCCGGCGAGGAAAGGACCAGCTACAGAGGGCCGTTCTC
CGATGGCTGCTGGCCGACCGGGCAACAGCTGTGGATCTGGCCGTGGCTTC
GGAGTGTCGACACCTGTAGCAGCGGCAGCGGCAGCGGCAGCAGCGGCGGC
GGCAGCAGCAGCAGCAGCAACTCCAGCAGCCGTACCGGATGGACCCGCCG
TTGGC
back to top