mRNA_P-littoralis_Contig623.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig623.23.1
Unique NamemRNA_P-littoralis_Contig623.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig623.23.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 3.240e-53
Identity = 94/157 (59.87%), Postives = 111/157 (70.70%), Query Frame = 1 
Query:  172 GGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRSLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINANGRVGQDF--HVADTSGEIMMAVTREETSRRIRAASRNTHKSVLCPR 636
            G +  WKKHFIT +SWFDLRL ILGFVS CR+LF+ P  FQ+DSLSPN RRF+ PR+ SQD+ EHRFSH R   GTHRNPTA+E K RS  GD+ RA NGK RRN++ N N R G DF  H       I++AVT+ ET + +RA  RNT   VLCPR
Sbjct:  120 GDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPR 276
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BLAST of mRNA_P-littoralis_Contig623.23.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.160e-32
Identity = 71/153 (46.41%), Postives = 96/153 (62.75%), Query Frame = 1 
Query:  175 GEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRSLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINANGRVGQDFHVADTSGEIMMAVTREETSRRIRAASRNTHKSVLCP 633
            G+  WKKHFIT  SW D+R+CILGFVS CR+LF+  + F+V    P    FI  R+  QD+IEH F H R   G+HRNPTA + K R   GD++R L+G  R  +N N N R G+DF  +    E+M+ V   E S RIRA ++++ ++VL P
Sbjct:  602 GDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPH-FINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCR--ANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSP 751
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BLAST of mRNA_P-littoralis_Contig623.23.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.050e-21
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1 
Query:  187 WKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRSLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINANGRVGQDFHVADTSGEIMM 558
            WK HFIT  SW D+R+CILG VS CR+LF++ + F++  LS +   FI  R + QD++EHR+ H     G+H NPTA + K R+   D+ R+L+G +R N     + R G+DF  +   G IM+
Sbjct:   91 WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLS-DVPHFINLRCIGQDIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRAN-----HARKGEDFIASGIRGRIML 208
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BLAST of mRNA_P-littoralis_Contig623.23.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.700e-7
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:  175 GEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRSLSQ 351
            G+ AWK HFIT  SW D+R+CILG VS CR++F+  + F++  LS +   FI  R + Q
Sbjct:  479 GDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLS-DVPHFINLRYIGQ 536
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig623.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE3.240e-5359.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE8.160e-3246.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE3.050e-2142.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE7.700e-747.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig623contigP-littoralis_Contig623:21494..23451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size806
Hectar predicted targeting categoryother localisation
Exons3
Cds size804
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791299.6617987-CDS-P-littoralis_Contig623:21494..219471680791299.6617987-CDS-P-littoralis_Contig623:21494..21947Pylaiella littoralis U1_48CDSP-littoralis_Contig623 21495..21947 -
1680791299.675654-CDS-P-littoralis_Contig623:22161..224221680791299.675654-CDS-P-littoralis_Contig623:22161..22422Pylaiella littoralis U1_48CDSP-littoralis_Contig623 22162..22422 -
1680791299.6890373-CDS-P-littoralis_Contig623:23361..234511680791299.6890373-CDS-P-littoralis_Contig623:23361..23451Pylaiella littoralis U1_48CDSP-littoralis_Contig623 23362..23451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig623.23.1prot_P-littoralis_Contig623.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig623 21495..23451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig623.23.1

>prot_P-littoralis_Contig623.23.1 ID=prot_P-littoralis_Contig623.23.1|Name=mRNA_P-littoralis_Contig623.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=268bp
GPRAEAKPLGSPEHCTSRASSPRFSDGRFAVGEDGHRHGGRALWMPLAPV
VSTLQLVGGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVD
SLSPNDRRFIGPRSLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGD
VIRALNGKTRRNSNINANGRVGQDFHVADTSGEIMMAVTREETSRRIRAA
SRNTHKSVLCPRSASRPPSYASFRKRRPDHNPEMDHPNPYEYGFWRDGPK
RGKWGAPLFLHYVPLESA
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mRNA from alignment at P-littoralis_Contig623:21494..23451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig623.23.1 ID=mRNA_P-littoralis_Contig623.23.1|Name=mRNA_P-littoralis_Contig623.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1958bp|location=Sequence derived from alignment at P-littoralis_Contig623:21494..23451- (Pylaiella littoralis U1_48)
GGTCCACGCGCGGAGGCGAAACCTCTTGGGTCACCTGAGCATTGCACCAG
TAGAGCCTCGAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGTGAGTGCAA
AAATCGTATTTTCTAGGGTCTCACAGGCGGCCCCTTCTGACCCCGGCTTC
CGACTACCCTCTCTAGCACGACAGCGTGCTCCTTCCACAGCGGTGGCAAG
TGTAGGCTCGCCCATCCCAGCCGTTCGCCATACTCATGATCTACTCTCGG
GAGCAATCCGTGTGGGAAACGATCGTGTGTGGGCGAGGATATCAACAAAA
TGCAGATCGCGAAGTAACATGCGACGAGCTCGGCGGACTCAGGGCCCTGG
TTTTTCGCATTTTTTGCAAATTTTTTAAAATGAGGAACGTCTGCTGTTTG
TTGTCACAAAAAAAACATTCATCAAAACATTGTCACGTCCCCATCATGCA
CCTTCTTTCGCGGTGTTTATTGCAGAGACCGTACAAATTACTTGATAGTC
CCGTCACCGTAGTTGCGCCCGAGATTTAGGCGCGCAGATTCGTGTATCAG
TTTCTCTAGAGAATTGCAGTAGTAGTTCTTAGAGGAGGGCTATAAATAGA
TAAAAAGAACAGACAGACGGGGATAGCGGAGCGAACCTGTCTGTATCCAG
GTCTGTAAAGCGAGAGTCCGCGTTTGGTTTGCCAAGCTGTTTCGAGGCAG
AAGTGGTGAGCCAGGGGTGATGTGCGAAAGTCTGTGGGTATAGTGTGGCC
CGACTTTTTGTTTTTCGTTTTCTGCAGGTCATAAATCGCTCGCAATAAAA
CATGTGCACGAGGGCCCTTCAAACCCACTCCACAGCAGTGGGTTGGAATA
TATGTAGAAAGAAGTCACAGCAGCAGCCGCTGCTCTGTGTAGTGATCGTT
CAATGGAAGTTATGATATGTGGCCACCGAAATTGACGCTCGGGTGCGATG
GAAAATCAGGGACGATTTTCGTACTCGTTCGGCGCTAAATTCGTCCCCTC
GCCCCCCTTCGCGTGCTTTCTCTCGACAGGTGGGGGAGGACGGCCACCGG
CATGGCGGTCGGGCGCTTTGGATGCCTCTCGCGCCTGTGGTTTCTACCTT
GCAGCTTGTAGGCGGAGAGCACGCGTGGAAGAAGCACTTCATCACGCGCG
AGTCGTGGTTCGATCTTCGCCTGTGCATCCTCGGTTTCGTGAGCACGTGT
CGTTTCCTTTTCGACCGTCCTGCGATTTTCCAGGTGGACAGCCTTTCGCC
GAACGACCGACGCTTCATCGGACCACGAAGTTTGAGCCAGGTTAGTGCCA
CTTTTGACATGTCGCGCGCTCGATGCCTCCGCGGAAAATCAGCATAGAGG
AAGTCCCTGTTCGTGTCTGAATTAGGGAAGATACTTTTGATGCTACTGGC
GTGGGATATGGCCACATTTTTATGCGGCATGACTCCGACCTCTCAGCCAC
CCAATGGATTGACAGCCTTTTGCGCTGTCCGCCGTCGACGTCTTGCTGCA
ACAGGACTTGATCGAGCACAGGTTTTCGCACTACCGCGGGAACAACGGGA
CGCACAGGAATCCGACGGCGCAGGAAGTCAAGACTCGGTCACAGACCGGG
GACGTCATCAGGGCTTTAAACGGGAAGACTCGTAGAAACTCCAACATAAA
CGCCAATGGGCGGGTCGGCCAAGACTTTCACGTGGCCGACACCAGCGGCG
AAATCATGATGGCGGTCACAAGAGAGGAAACGAGTAGGCGGATTAGAGCT
GCAAGTAGAAACACGCACAAGTCTGTCTTGTGCCCTAGGTCAGCCAGCCG
GCCACCCTCTTATGCCTCCTTCCGGAAGCGAAGACCAGACCACAACCCTG
AGATGGACCACCCGAACCCCTACGAGTACGGGTTTTGGAGGGATGGCCCA
AAAAGAGGGAAATGGGGAGCGCCGTTGTTCTTGCATTATGTACCCCTCGA
GTCCGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig623:21494..23451-

>mRNA_P-littoralis_Contig623.23.1 ID=mRNA_P-littoralis_Contig623.23.1|Name=mRNA_P-littoralis_Contig623.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=804bp|location=Sequence derived from alignment at P-littoralis_Contig623:21494..23451- (Pylaiella littoralis U1_48)
GGTCCACGCGCGGAGGCGAAACCTCTTGGGTCACCTGAGCATTGCACCAG
TAGAGCCTCGAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGTGGGGGAGG
ACGGCCACCGGCATGGCGGTCGGGCGCTTTGGATGCCTCTCGCGCCTGTG
GTTTCTACCTTGCAGCTTGTAGGCGGAGAGCACGCGTGGAAGAAGCACTT
CATCACGCGCGAGTCGTGGTTCGATCTTCGCCTGTGCATCCTCGGTTTCG
TGAGCACGTGTCGTTTCCTTTTCGACCGTCCTGCGATTTTCCAGGTGGAC
AGCCTTTCGCCGAACGACCGACGCTTCATCGGACCACGAAGTTTGAGCCA
GGACTTGATCGAGCACAGGTTTTCGCACTACCGCGGGAACAACGGGACGC
ACAGGAATCCGACGGCGCAGGAAGTCAAGACTCGGTCACAGACCGGGGAC
GTCATCAGGGCTTTAAACGGGAAGACTCGTAGAAACTCCAACATAAACGC
CAATGGGCGGGTCGGCCAAGACTTTCACGTGGCCGACACCAGCGGCGAAA
TCATGATGGCGGTCACAAGAGAGGAAACGAGTAGGCGGATTAGAGCTGCA
AGTAGAAACACGCACAAGTCTGTCTTGTGCCCTAGGTCAGCCAGCCGGCC
ACCCTCTTATGCCTCCTTCCGGAAGCGAAGACCAGACCACAACCCTGAGA
TGGACCACCCGAACCCCTACGAGTACGGGTTTTGGAGGGATGGCCCAAAA
AGAGGGAAATGGGGAGCGCCGTTGTTCTTGCATTATGTACCCCTCGAGTC
CGCA
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