mRNA_P-littoralis_Contig621.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig621.49.1
Unique NamemRNA_P-littoralis_Contig621.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: D7FR53_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR53_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 8.200e-119
Identity = 201/244 (82.38%), Postives = 218/244 (89.34%), Query Frame = 2 
Query:  290 MRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNNATFSDRVENEYARVGKTGHIVLVYIFAVLVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRKEREXXXXXRKIDKVSRG 1021
            MRKNGFEAPLEPLQVLTW+LLL+IVGGFYS I+PAL  +WAI AGLVYG+LA+STV+AG+LACLKDPIDPNVRRFH GETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXX  NYRYFV LL+STFFMT IQLG+S WF +M+H++NA FSDRVE  YAR+G TGHIVLVY FAVLVLPFLGLLAQLLGFH MLISR+LTTYDYIVQEQRKERE     R +DK   G
Sbjct:    1 MRKNGFEAPLEPLQVLTWVLLLLIVGGFYSFIVPALARVWAIVAGLVYGVLASSTVLAGILACLKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYRYFVTLLVSTFFMTSIQLGISAWFAIMYHSDNAAFSDRVEGRYARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQEQRKERERKERRRILDKDKSG 244
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BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A835YWP3_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP3_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.620e-61
Identity = 126/224 (56.25%), Postives = 160/224 (71.43%), Query Frame = 2 
Query:  314 PLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNNA--TFSDRVENEYARVGKTGHIVLVYIFAVLVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRKERE 979
            PLEPLQV TW LLLV++  FY+I++P L    AI  G +YG+ A    I G +AC  DP+D NV   HAG  A  S  ++TFCFLCQ+HVNKGSRHCRY   XXXXXXXXXXXXXXX    NYRYFV LL+ST  +T +QL LS+W +V+FHT +       R+++ Y  +   G+I++VY+FAV+VLPF+GLL QL+GFH ML    LTTYDYI++EQ++ERE
Sbjct:    2 PLEPLQVFTWSLLLVMIVEFYAIVVPGLERGPAIGLGCLYGVFAVGCTIMGFMACKVDPMDHNVGA-HAG--AGSSTQERTFCFLCQVHVNKGSRHCRYCDKXXXXXXXXXXXXXXXIGGTNYRYFVMLLVSTLGLTGLQLALSIWLIVLFHTQSEGDPLYQRIDDRYGSLSSDGYIIIVYVFAVMVLPFVGLLIQLIGFHMMLAREGLTTYDYIIREQKRERE 222
[Close]
BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A7S2UYM7_9STRA (Palmitoyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYM7_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.290e-50
Identity = 120/238 (50.42%), Postives = 154/238 (64.71%), Query Frame = 2 
Query:  272 DGCQQNMRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNNATFSDRVENEYARVGKTGHIVLVY--IFAVLVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRKERE 979
            D    N R NGF+ PLEPLQV+TW LL++++GGFY IIIP L  L+ I  G+++G      + AG +AC+ DPIDPNV+    G  + G  +DK FC LC++HVNK S+H   XXXXXXXXXXXXXXXXXX    NYRYF+ LL+ TF  T ++LGL    +  +  +   F D V + Y   G    +VLV   +FA  ++P   LL QL  FH MLI  DLTTYDYI++EQR+ERE
Sbjct:    2 DANSTNRRTNGFQRPLEPLQVVTWGLLILMIGGFYGIIIPPLEELYQIICGIIFGASTVGAIWAGFMACITDPIDPNVQEALKGNHSPGPHSDKLFCALCRVHVNKSSKHXXXXXXXXXXXXXXXXXXXXXIGAANYRYFIILLVFTFIFTLLELGLFARHISAYFVDKDGFQDSVRDAYGG-GSDPMVVLVLCLVFAAALVPVALLLGQLFFFHGMLIHEDLTTYDYIMREQRRERE 238
[Close]
BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A7S3YC54_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC54_HETAK)

HSP 1 Score: 140 bits (352), Expect = 4.050e-35
Identity = 102/245 (41.63%), Postives = 141/245 (57.55%), Query Frame = 2 
Query:  284 QNMRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNNATFSDRVENEY-ARVGKTGHIVLVYIFAVLVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRKEREXXXXXRKIDKVS 1015
            + +RKNG EAP EPLQ+ TW LL  ++ GFY +IIP L  +     G+++ +L    V+A  LAC  DP D NV          G   D  +C  C  HVN+ S+H   XXXXXXXXXXXXXXXXXX    NYR+F+ LL++TF  T ++L + +  V ++  +   +  +VE+ Y A     G ++  +IF V + P  GLL QL  FH  L+   LTTYDYI++EQ +E E     R   +V+
Sbjct:    5 RTVRKNGLEAPFEPLQIATWFLLATMIAGFYGVIIPPLSIVLQALLGIIFAILVVIAVVAAFLACWIDPSDDNVLGLATVGVNNGGT-DNIYCRFCATHVNRSSKHXXXXXXXXXXXXXXXXXXXXXIGKKNYRHFLVLLVATFAFTLLELAMFIHNVAVYFQDKDDYKTQVEDAYGASASPLGPLIASWIFIVALTPVAGLLGQLFFFHITLLREGLTTYDYIIREQTREHEARHQRRNNTQVN 248
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BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A7R9U7W5_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7W5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.410e-27
Identity = 76/232 (32.76%), Postives = 121/232 (52.16%), Query Frame = 2 
Query:  290 MRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRF-HAGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNNATFSDRVENEY-ARVGKTGHIVLVYIFAVLVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRKERE 979
            MR NG + P   LQ+ TW+LL V++ GF+ I++P L  + A  +  VY +L    V  G   C  +P+DP + RF   GE   G   + TFC L Q++V+K SRHCR+                      NYR+F + + +      + L L+ + + ++ T+     DR+E+ + +       + +V +++VL+L    L+ QL  FH  LI   L+TY+YI+ EQR+ERE
Sbjct:    6 MRANGLQPPYSVLQISTWLLLPVLMSGFFVILLPTLSVVEAAVSTAVYSVLLCIAVFCGYKTCAINPVDPGLERFLSTGERPPGGV-NTTFCALDQINVHKDSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRWFFSTVTAVVAFVLVHLALNGYVIAIYITDREDLEDRIEDGFDSGFPVDAFLAIVIVYSVLLLTVGLLMLQLWTFHLYLIYLGLSTYEYIISEQRRERE 236
[Close]
BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A7S3ZJ70_9STRA (Palmitoyltransferase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJ70_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.520e-25
Identity = 107/261 (41.00%), Postives = 139/261 (53.26%), Query Frame = 2 
Query:  290 MRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPN---LWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAA---------------DKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMF----HTNNATFSDRVENEYARV-GKTGHIVLVYIFAVLVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRKEREXXXXXRKI 1003
            MR+NGF+ PL PLQ LTW L  V++  FY +++P LP     WA+  G VY   A +T     +    DP DP+V    A   A    A               D   C+LCQ+HV   S+HCR XXXXXXXXXXXXXXXXXX    NY YF+A++ ST   T +QL LSV+ VV         +A  +    +   R  G    + LV  +A L++P + L+ QL  FHAML+ R LTTY+YI+ EQR +       R I
Sbjct:    1 MRENGFDYPLHPLQCLTWALFPVVLLDFYWLLLPLLPGEATRWAV--GTVYTAAAATTFFCAWITAAVDPRDPSVAA--AAPPATNRLARCCEPLALWPPPVGEDTCRCYLCQVHVFASSKHCRXXXXXXXXXXXXXXXXXXXVGAKNYGYFLAVIASTCVFTTMQLALSVYVVVELAVPDRRRSAVAARARRHAVGRERGVDAVLALVCAYAALLVPLVVLIGQLALFHAMLVRRGLTTYEYILGEQRVDERPSAPPRTI 257
[Close]
BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A7S3K685_9STRA (Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K685_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.140e-24
Identity = 97/257 (37.74%), Postives = 140/257 (54.47%), Query Frame = 2 
Query:  290 MRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNV---RRFHAGETAAGS------------------AADKT-----FCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNN---ATFSDRVENEYARVGKTGHIVLVYIFAVLVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRKE 973
            MR NGF+ P  PLQVLTW +  +I+ G+Y I++P L N    + GL+Y +LA  T ++  +    DP DP V   +R      A+GS                  A D++      C+LC+  V   S+HCR XXXXXXXXXXXXXXXXXX    NY YF+ ++  T+    +QL L+V+ ++     +   + F    +N +        I+ +  +A ++LP +GL+ QL  FH ML+   LTTY+YI+ EQRKE
Sbjct:    1 MRVNGFDRPFHPLQVLTWFVFPLILFGYYGILMPLLENELLYSTGLIYSMLALFTFLSAWITSAIDPRDPRVDEAQRRQQQIMASGSCLSRCCEPLAMGPAFEYVAVDESDTETIVCYLCEARVESSSKHCRXXXXXXXXXXXXXXXXXXXIGQRNYAYFLCVICCTWLFATLQLALTVYVLIRLTVPSLRASLFVRNAQNHWCLPTMQAVIIALGAWAGILLPLVGLVGQLGAFHLMLLGEGLTTYEYIINEQRKE 257
[Close]
BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A6U4ETW1_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4ETW1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.060e-24
Identity = 74/231 (32.03%), Postives = 111/231 (48.05%), Query Frame = 2 
Query:  290 MRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNNATFSDRVENEYARVGKTGHIVLVYIFAV----LVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRK 970
            MR NG   P   LQV TW+LL V+VGGFY +++PAL  L        Y L     + A    C  +P+DP + +F         +A+ TFC L Q++V K SRHCR+                      NYR+F   + +      +  G++V+ + ++ T+     +RVE  +   G   HI + + F V    ++L    L+ QL  FH  LI   L+TY+YI+ EQR+
Sbjct:    6 MRVNGLHRPYSGLQVSTWVLLPVLVGGFYGLMVPALDTLERALCVTFYSLFLAVALGAAFKTCAINPVDPRLEKFLLTGVRDPGSAETTFCALDQINVCKTSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRFFFTTVTAVVGFVAVHFGVAVYLIALYATDRDDLEERVEGGF---GGGSHIDIYFAFLVAYTAVLLCVALLMLQLWTFHIYLIYLGLSTYEYIIHEQRR 233
[Close]
BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A6U4EWZ3_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EWZ3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.990e-24
Identity = 74/231 (32.03%), Postives = 111/231 (48.05%), Query Frame = 2 
Query:  290 MRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNNATFSDRVENEYARVGKTGHIVLVYIFAV----LVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQRK 970
            MR NG   P   LQV TW+LL V+VGGFY +++PAL  L        Y L     + A    C  +P+DP + +F         +A+ TFC L Q++V K SRHCR+                      NYR+F   + +      +  G++V+ + ++ T+     +RVE  +   G   HI + + F V    ++L    L+ QL  FH  LI   L+TY+YI+ EQR+
Sbjct:    6 MRVNGLHRPYSGLQVSTWVLLPVLVGGFYGLMVPALDTLERALCVTFYSLFLAVALGAAFKTCAINPVDPRLEKFLLTGVRDPGSAETTFCALDQINVCKTSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRFFFTTVTAVVGFVAVHFGVAVYLIALYATDRDDLEERVEGGF---GGGSHIDIYFAFLVAYTAVLLCVALLMLQLWTFHIYLIYLGLSTYEYIIHEQRR 233
[Close]
BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Match: A0A2J8AJI6_9CHLO (S-acyltransferase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AJI6_9CHLO)

HSP 1 Score: 96.3 bits (238), Expect = 2.900e-18
Identity = 66/229 (28.82%), Postives = 111/229 (48.47%), Query Frame = 2 
Query:  290 MRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNL---WAIAAGLVYGLLATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXXINYRYFVALLLSTFFMTFIQLGLSVWFVVMFHTNNATFSDRVENEYAR-VGKTGHIVLVYIFAVLVLPFLGLLAQLLGFHAMLISRDLTTYDYIVQEQ 964
            MR++G ++PL+P QV +WI+ L +  G Y+  +P + +    WA+ A  +Y +L  +  I  +     DP DP ++         GS+  + FC LCQ  V + S+HCR                       NY +F AL+ ST  M  +QL   +W  +     +      V  +Y R V   G  V + ++  L++  + +L +L  FH +LIS+ ++TYDYI+ ++
Sbjct:    1 MRQHGLQSPLDPHQVASWIVFLALTSGVYAFYVPFVEDAGSRWALVA--LYSVLIVAMFILNMYTSYLDPSDPGLK---------GSSDGEFFCGLCQASVARSSKHCRACDRCVEGFDHHCKWLNNCIGARNYWHFFALISSTCSMLVLQLAWGLWLFIRSFVASTEMRALVAEKYGRSVVYVGWQVALAVYMALLVTSVVMLGELFFFHIILISKGMSTYDYIISQR 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig621.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR53_ECTSI8.200e-11982.38Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YWP3_9STRA1.620e-6156.25Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2UYM7_9STRA2.290e-5050.42Palmitoyltransferase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YC54_HETAK4.050e-3541.63Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U7W5_9STRA1.410e-2732.76Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3ZJ70_9STRA9.520e-2541.00Palmitoyltransferase n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3K685_9STRA1.140e-2437.74Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis... [more]
A0A6U4ETW1_9STRA2.060e-2432.03Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6U4EWZ3_9STRA2.990e-2432.03Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxI... [more]
A0A2J8AJI6_9CHLO2.900e-1828.82S-acyltransferase n=1 Tax=Tetrabaena socialis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig621contigP-littoralis_Contig621:160284..166564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR53
PFAMsDHHC
Model size1036
Max annot lvl2759|Eukaryota
KEGG koko:K07964,ko:K16675,ko:K20027
KEGG ReactionR07811
KEGG Pathwayko00531,ko01100,ko04391,ko05205,map00531,map01100,map04391,map05205
KEGG ModuleM00078
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Exons6
Evalue2.52e-121
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-09_003460.1
EC2.3.1.225,3.2.1.166
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size747
COG categoryZ
CAZyGH79
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig621.49.1prot_P-littoralis_Contig621.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig621 160284..166275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791298.80409-CDS-P-littoralis_Contig621:160283..1603991680791298.80409-CDS-P-littoralis_Contig621:160283..160399Pylaiella littoralis U1_48CDSP-littoralis_Contig621 160284..160399 -
1680791298.8164423-CDS-P-littoralis_Contig621:160753..1608761680791298.8164423-CDS-P-littoralis_Contig621:160753..160876Pylaiella littoralis U1_48CDSP-littoralis_Contig621 160754..160876 -
1680791298.8276832-CDS-P-littoralis_Contig621:161305..1614511680791298.8276832-CDS-P-littoralis_Contig621:161305..161451Pylaiella littoralis U1_48CDSP-littoralis_Contig621 161306..161451 -
1680791298.8402085-CDS-P-littoralis_Contig621:164951..1650821680791298.8402085-CDS-P-littoralis_Contig621:164951..165082Pylaiella littoralis U1_48CDSP-littoralis_Contig621 164952..165082 -
1680791298.851931-CDS-P-littoralis_Contig621:165425..1656421680791298.851931-CDS-P-littoralis_Contig621:165425..165642Pylaiella littoralis U1_48CDSP-littoralis_Contig621 165426..165642 -
1680791298.8657296-CDS-P-littoralis_Contig621:166261..1662751680791298.8657296-CDS-P-littoralis_Contig621:166261..166275Pylaiella littoralis U1_48CDSP-littoralis_Contig621 166262..166275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791298.8784256-UTR-P-littoralis_Contig621:166275..1665641680791298.8784256-UTR-P-littoralis_Contig621:166275..166564Pylaiella littoralis U1_48UTRP-littoralis_Contig621 166276..166564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig621.49.1

>prot_P-littoralis_Contig621.49.1 ID=prot_P-littoralis_Contig621.49.1|Name=mRNA_P-littoralis_Contig621.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp
MRKNGFEAPLEPLQVLTWILLLVIVGGFYSIIIPALPNLWAIAAGLVYGL
LATSTVIAGVLACLKDPIDPNVRRFHAGETAAGSAADKTFCFLCQLHVNK
GSRHCRYCDKCVDRFDHHCKWLNNCVGRINYRYFVALLLSTFFMTFIQLG
LSVWFVVMFHTNNATFSDRVENEYARVGKTGHIVLVYIFAVLVLPFLGLL
AQLLGFHAMLISRDLTTYDYIVQEQRKERERKERRRKIDKVSRGLSAT*
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mRNA from alignment at P-littoralis_Contig621:160284..166564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig621.49.1 ID=mRNA_P-littoralis_Contig621.49.1|Name=mRNA_P-littoralis_Contig621.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6281bp|location=Sequence derived from alignment at P-littoralis_Contig621:160284..166564- (Pylaiella littoralis U1_48)
GAGTAGGGTATGGTTTTGTTTGTCATCTATACAGTCTTGAATTGTTCAAG
TCAGTACAATAGAAAGTAGAAAAATAATGCCAGATTGAGCTATAACAAAC
TCCGTATTTGCAGTCTTGAATAGGGGCTACAAGCACTACGGGCACGGACG
GGGGTTGGTTATTGATCTTGCGCATCGTGTGCCCCCCTGCGAACGAACGA
ATGAGAGACAGGAGAGACGGGAGAGACGGATGAGCTGAGACGAGGTCGGT
GGTGAGCACGAGTGCCGCAAGGACGGGTGTCAACAGAACATGCGCAAGAA
CGGGTGAGGGCCTTTGTTTAGCTGTGGTAGATCAGTTCGCTTGTCGATGA
TAATGACCGCAAGGAGAGAGATAAGCGTCTACTTCTACATATCTAAGTCT
CAGTTCAGTTCTCTAATCGCAGTTCATAATACTGGAGTACTAATACGGAA
GTATCATACGGCAACCTATCACACAGGAGTAGGAATGAGGGAGCGGAGCT
CGGTATCGTAGCGGAGCTGTAGGGCACGTTGCAGAGAGAACGACAGGGAG
AGAGGAATAAGGAGGTAGAGAGAAATTAGAGAGAGATAGGCAGTGAGAGA
CGGCTGAGGCAGTAAGAAGGATTTCTTGGTCACGGTTGCTATGCCCACCC
CTCTCTACACACTCCACCCCTTGCCCAATGTGGAGAAATGTGTCTGCCCC
GCCCAATTTCTTCCCCCCCGCTGGTTTCCACGTTTCCACAGACTCCTTCG
TATCATAAAGCAGTACGATACAGCTAGTACTACAGAGGAAACCTCGTATT
CGCTGTAACTATATCGTTCCTATCATATCATACGAGTTAACGAGGAATAA
ACTTCATCACCTCCGTTGGCTCTTCCTCTTGCCCGCTCTCTCGCCGCCTG
TGTTATTCTTTGTTTGTCTCAGGTTTGAGGCTCCTCTGGAGCCTCTACAG
GTGCTGACATGGATCCTTCTGCTTGTTATTGTAGGGGGCTTCTACTCCAT
CATCATCCCCGCACTTCCGAACCTCTGGGCAATCGCTGCAGGCTTGGTGT
ACGGGTTGTTGGCGACGTCGACCGTCATCGCTGGGGTATTGGCCTGCTTG
AAAGATCCGATCGACCCGAACGTCCGCCGATTCCACGCGGTAGGTTGGGT
TGCTTGATGCATTGATCGACGAGGTCTCCTCGTTCAGTAAGTCGGACCGG
TGCGCGACCCTCGTCGTCGCACGGTTATGGCAAACCCTGCGTATGACATT
GCCAGGTTGGTATAGTTGATCAATGGCAGTACAAAGTGGATGTGGTTACA
GTTTTACCATTACACTCCCATTCGGAACAAAGTGGGTACATCTAGGTATC
TCCAGGTCCATACATACAATACTCGAATTTTCTCCGTATTGTAGTCGTCT
GCTCCCCAAGGCATCGTTACGGAATTCTTCATGTTCTGCTGGGTGCGCGG
TTTTGCTGTTCGGTGGTTTTGACGTTGACCAGGGCGAAACTGCAGCAGGG
TCGGCGGCCGACAAGACTTTTTGCTTCCTTTGTCAACTGCATGTGAACAA
GGGGAGCCGGCATTGTCGCTATTGCGACAAGTGCGTGGATAGATTCGACC
ACCATTGCAAATGGTGAGTGCAGTGTAACAGGGCAGTTGGGGTGGGTGGG
GTGAAGGTTTCGCAACTGCTGTGCGACAGGGAGGAAATCTTTCGTCGCTA
GCCGTCCGGCCGAACCTGACTTCTTTGTATGTGCTACACCCCGGGCACCA
GAAATGGGAGGGGGAGAGGGGCAACCTTCATTGCAATGCTGGCCTTTAGT
TTCCAACTCTATCTTGCTCCTCACGTTGGCGTGTTTATTTCAACACCGCA
TGTATTGCCGTCTTCGGCGGCTACCTTAGCCACCCTGCAACTACCCTGTT
TTTCACTTCATCAGAGGCAAAACCTTCCTACCGCGGGCGGTGTGAAGCCG
TAAAACCCCTTCGTTCCTCCCGGTGACAGCTTCACATGGTCCCGAAGGGA
CCGCAGGAAGTACTGGTGTAATCTCATCGCTTATAGGTGATGTGATGCGA
AATGTCGGTGCTCTGTGTGTACAATTCTCTCTTTCAGCAACTCTGGTATA
ACCAGGATTATACACAAAGGTTCCTGTCCCGCGACCCCACCTTCTGGATG
TACAACCTTTACTATCGTGAAGGGTTCCGCAGAAAACTTTACTTACGTAC
AAAGCAGGGCTTTATGACCAGTAGTCTCATCGTTAAATAGGATTCCGGTG
TAGGCATGGGAGATCTGAGCATTGCCTCCCCCGCTCCATTTTTTTTTGGA
GCCAAGTCGTAGCCCTCGTACGTTCGCACTTTTTAAAGGCACAGGGATAT
TTTCTAGAAGTAGCTTTGAAACCGGTTGGACCAGAGTGTATCAGATATAG
GCAAAGCTCGGGCATAAAAACACATGCGGATTGATCAGTCACAGTTGTTG
GTTGATTGCTTTGTCACACTGAGTAAGTCCCGAAGGTACTCTCCGGATTC
GACCGAGGAGGATTGCCGTGTCAAAGTGGGTGGATCCCGAAAGGTATTCA
TCGGGGGTTCGACCGAGGAGGATTGCTGTGTCACACAGAGTGGGTGGGTC
CCGAAAGGATTCGAGCGAGGTGGACAGCTAGCTGTGTAACAGTTGGCGGG
TCCAGAGAGGTACTCAACGGAAATTCGAGCGAGGAGGATGGCTGTGTCAC
AATGGGTGGGTCTCGAAAGGTTTGAGAGAAAGGTTTGAGAGGAGAGGACT
GGTGTGTCACAGCATATCGGGGTGGATTGATCAATCACAGCAGTATTGTG
TTGGTGGATGGATTATTGCACATAGCACAGCAGCAGTGGGCTGGTCTCGA
TGGAGCACAAGTAATCCAATGCAGAAGCAGTAGCACGACCAGCAAGAACA
GGTTGAACAGGGCGGTAATCTGCAGCTCGGGGTGCTATGCGGGGTGCTCT
GTGCTGAAGTTTGCCGTCAGAGAAGCAACAGGAAGCGACAGCAGTAGTTG
CAGGGATAGAACAGGAGGGCTGTGGGTACACTGCACCAGGAGCTCAAGAG
TGTTGTGTGCTTGTAATTTGCAGGTGAAGCTAGAAACTTGTTCTTCGAAG
TACGAAGTAAGAGTCGTACTGCTGTAGCACGAGCAGGCCAACACACGACA
GTACAGGAAAAGGATTGACCCTTGACCCAGAGGCAGCAGCAGAGCAGCTC
ATGAAGACAGAGATGTTAAGATCGACATCCCGGCACAGCACAGCAGTGGT
TGGCGCAGCATTACGGGCAGGAAAACTAAAGGCGTAGTGGCTGGCGATCG
GGACACCCAGCACCACCGACGAGCCCGTGTAACGGAGTGACGTGTGACAC
ATTCGAACATCGGAGGGGTTTCCACACGAGCGCCTCACGACCGGGATTTT
GCTGTTCGTATCCCATGCGACATTTTTGGTGTCACGCGCTAGTGGAGATA
TATGTCCCTCGTATGGGCGAGACCCCCCCTCTACCCGTTGAAGTCGATAT
TTGGGAATTGAGGATGACCAGGATTCACTGAACCCCCTTTTTTCCAGTGA
AATGTTCAAAGTGTTGCAGAACGCGCGCCTACACGCACGCACCGATCCAT
TCATTCACACTCCCACCCAGCGAACGTTCACAACCCAGCTGTGTGCTGTA
GTCTGCCGTCAGAGTAGCAGCAGGAAGCGCCGGCAGTAGTTGCAGGTAGA
GGACGGGGGGTCTTTGGGTGCACTGCATCAGGAGCTGAGTGCTGTATGCT
TGTTTGTTGTAGTTTCACTTGCATGTGAAACTACAACAGTACAGCAGTAG
TAGTAGTGGTAGTACAAAGTAGCTGCTTACAGCACGAGTCGGTGACCACA
CACAGCAGTACCAGGAAGCGAAGGCCACCACACACAGCAGATTGACCCTT
GGCCCAGAGACCGCAGTAAGAAAGACAGAGAACTTCAGAGACATCACGAC
GCAACCCAAAAGCCGACCCAACCAAACTACTCCAACCCAACCCAACCCAA
CCCATCCTTACGGTACCCCTCTCAACCCCCTCCAGAGGGGGTGCGCAACC
CAACCCAACTCAACCAACCAACGTAACCAACCCAACCCAACCCCGGTGGC
GGAATGCTTTTCACTAATAGATTTATCGTATTTTTAACAATTGAAGAGAG
AAAAAGTTAGACCTGCGACCCCAGCCCGTGGAAGGGAACGCGGTTGTTCT
CTACAAGTCTCGTAAATCGTATTCGTGGATCCCCGGTTCCATGTGAATCC
GTCACGCCTTCTCCTGTCGCATTTGCACATTCTCCTGCGAGTGTACCTCG
GGGAAATATGCTGACGGAATTGTTAAGATCGCTCCGAGACACCACGGCTG
TGTCACGCTATTTCGCTCCGATGAAACATCACAACCGATCGAGGTATAAG
GTCGGTTGACGTCGTGATGTGCGACAAGTATCCTCACGCTCCCCCTCGCA
TCTCATTTCTCATGTCTCTCCTCCAAGTTCTCCCTGAGCTTGTGTCATTC
ACTTTCGTTGTAGATCGACAGAGGGACCTGATGCCTACGCTTGTTGTCAC
AGACAAAGGCTAAGGCTTTTTCCTCTCCAACGGCTGTACTTCTGATGTGT
GTAAAAATGTGTGATTTTGACGTCATCCACGTTAGTTCCGACGTGACGTG
TGCACAAATTACGCGGCCGTTGCCATCAAGTTGGGGGTGACTGGAGAAAA
TAATTTCCCTGCGCCGAAAGAGACTACAACGTGTACAGCGGTCCTACTTC
CCTCGTCGGTAACCGCGTGGGTAGAGTAGCGTCTAGTTTTAATTTCCCAG
AGCTTTTCACCCCTTCAGGTTGTGTTTGAAGGAAGAACAATAACGCTTCG
TTGGGACTTGCCTCAACTGACCTTCCAAACTTTCGAGAGCAGCCTCTAGG
CAACGAGGCAACTCACAATATACGAGCTGGAAAATCTATCCCTTGGACTG
GATCCAAGCAAAATGTCCAACACCGCAAGAATGACGCATGTTGTGTTACT
AGCGCACCTGACTCTGTATAACAGCATGCTATTTCTACATTTTGGGCGCC
GCGCAGAGTGTCCGCTCACCTCGCCGCTGAGGTTCTTGCTCTTTCACCCC
CCGCTGCTTACAGGCTCAACAACTGCGTCGGCCGAATCAACTACAGGTAC
TTCGTTGCTCTTTTGTTGTCGACGTTCTTCATGACCTTCATCCAGCTGGG
GCTTTCTGTGTGGTTTGTCGTCATGTTCCACACAAACAACGCAACCTTCA
GCGATAGAGGTATAGTTTGATGTTCCGTACCCGCCTAAGATCGACGCAGG
CTTTTTCGGTGGTGTGAGTCTTACATGTGTACGTTATGGTGGTACCTTCT
GTGTGGTCATGAAGACACGTCGAAACCTATGTCAAAAAGGGAAGTGTAGG
AATAGGGCTCATGGTGTCATCCTTCTCGCGCGTTTGACGCAACTCACTTT
TATAGTGCCAATGACCTTGTGGTACGATAAATTGACTCTAATACATGCGC
TCCAGCAAAACACCGACAAACAGCCTGACAGACTGTCGTAGAAATGGGTC
CCAGGATACCACGAAACGACACCAGATTGTTTTCCCACTCTTTCATCATT
TTCGAACTAATTGGAACCTCCGGTTTTTGATCTCCGCCACCCCTCCCTCT
CTCTTCTTTTCCGTTTGGGTGCCCGTTCTCCATTCTAGTCGAGAACGAAT
ACGCACGGGTAGGCAAGACAGGACACATTGTTCTTGTGTATATATTTGCC
GTCCTGGTTTTGCCCTTCCTGGGGCTTCTGGCCCAGCTTCTGGGATTCCA
TGCCATGCTGAGTGAGTGGCTGGAGAGTGAACCAGCCCTTTGAATGCCTC
GCCGCGCTTGCTCCCTTTTATACTGTTGCATACAGACACTGGTTCGTGAG
TACAAAGCACGAGATGCGGTGGCGAATCTGGGCAAGTCACTAAAGAAATT
TAGGTTGTGGATACGCGTTTTATTCCTCCAACAGAATCGGGCAGCGTCGA
TGCGACAGAATCGGGCAGCGTCGATGCGAGAATACGTACTAGATGACCCA
CAACTGCCACCCCTTTCCAATTAATTGAATGGCAGAGTGCGTTCGGCGAA
CGAACCCGCTGTCCCACCTCCCACCTCCCCCCCCCCCACCCCCCACCCCC
GCGTTTCCCGAGCAGTCTCGCGCGACTTGACAACGTACGACTACATCGTA
CAAGAGCAACGGAAAGAGCGGGAACGCAAAGAGCGACGAAGAAAAATAGA
CAAGGTCAGTAGGGGTCTGTCTGCTACTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig621:160284..166564-

>mRNA_P-littoralis_Contig621.49.1 ID=mRNA_P-littoralis_Contig621.49.1|Name=mRNA_P-littoralis_Contig621.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig621:160284..166564- (Pylaiella littoralis U1_48)
ATGCGCAAGAACGGGTTTGAGGCTCCTCTGGAGCCTCTACAGGTGCTGAC
ATGGATCCTTCTGCTTGTTATTGTAGGGGGCTTCTACTCCATCATCATCC
CCGCACTTCCGAACCTCTGGGCAATCGCTGCAGGCTTGGTGTACGGGTTG
TTGGCGACGTCGACCGTCATCGCTGGGGTATTGGCCTGCTTGAAAGATCC
GATCGACCCGAACGTCCGCCGATTCCACGCGGGCGAAACTGCAGCAGGGT
CGGCGGCCGACAAGACTTTTTGCTTCCTTTGTCAACTGCATGTGAACAAG
GGGAGCCGGCATTGTCGCTATTGCGACAAGTGCGTGGATAGATTCGACCA
CCATTGCAAATGGCTCAACAACTGCGTCGGCCGAATCAACTACAGGTACT
TCGTTGCTCTTTTGTTGTCGACGTTCTTCATGACCTTCATCCAGCTGGGG
CTTTCTGTGTGGTTTGTCGTCATGTTCCACACAAACAACGCAACCTTCAG
CGATAGAGTCGAGAACGAATACGCACGGGTAGGCAAGACAGGACACATTG
TTCTTGTGTATATATTTGCCGTCCTGGTTTTGCCCTTCCTGGGGCTTCTG
GCCCAGCTTCTGGGATTCCATGCCATGCTGATCTCGCGCGACTTGACAAC
GTACGACTACATCGTACAAGAGCAACGGAAAGAGCGGGAACGCAAAGAGC
GACGAAGAAAAATAGACAAGGTCAGTAGGGGTCTGTCTGCTACTTGA
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