mRNA_P-littoralis_Contig621.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig621.11.1
Unique NamemRNA_P-littoralis_Contig621.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig621.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig621contigP-littoralis_Contig621:45011..45765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size637
Hectar predicted targeting categoryother localisation
Exons2
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791297.9663734-UTR-P-littoralis_Contig621:45010..451271680791297.9663734-UTR-P-littoralis_Contig621:45010..45127Pylaiella littoralis U1_48UTRP-littoralis_Contig621 45011..45127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791297.9764836-CDS-P-littoralis_Contig621:45127..452441680791297.9764836-CDS-P-littoralis_Contig621:45127..45244Pylaiella littoralis U1_48CDSP-littoralis_Contig621 45128..45244 -
1680791297.9880543-CDS-P-littoralis_Contig621:45363..457651680791297.9880543-CDS-P-littoralis_Contig621:45363..45765Pylaiella littoralis U1_48CDSP-littoralis_Contig621 45364..45765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig621.11.1prot_P-littoralis_Contig621.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig621 45128..45765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig621.11.1

>prot_P-littoralis_Contig621.11.1 ID=prot_P-littoralis_Contig621.11.1|Name=mRNA_P-littoralis_Contig621.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp
WYDRIDEGARRFTDEWLKKEGDLSETRRRKRERDAAERQALTKRGRTDGE
DKREEEYGGAQGQRGSGVGVAQHKKKQSNAKLRGGRSGKPVGRSGGVAAA
KDVGQKRLGKQLGTVVPVAGGMSATEESKREQADFLFVRRRPVCCVCLRM
HSLSLCALPVSSFLLFFLSFVC*
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mRNA from alignment at P-littoralis_Contig621:45011..45765-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig621.11.1 ID=mRNA_P-littoralis_Contig621.11.1|Name=mRNA_P-littoralis_Contig621.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=755bp|location=Sequence derived from alignment at P-littoralis_Contig621:45011..45765- (Pylaiella littoralis U1_48)
TGGTACGACAGGATCGACGAGGGTGCGCGGCGGTTTACGGACGAGTGGCT
CAAGAAAGAGGGAGACCTATCAGAGACACGTCGACGGAAAAGAGAGAGGG
ACGCGGCTGAGAGGCAGGCCTTGACTAAAAGAGGGAGAACGGATGGCGAG
GATAAACGAGAGGAGGAGTACGGGGGGGCACAAGGGCAGCGGGGTAGTGG
GGTTGGAGTTGCACAACACAAGAAGAAGCAGTCCAATGCCAAGCTACGGG
GTGGCCGGAGTGGAAAACCTGTAGGGCGGAGTGGTGGTGTAGCTGCTGCC
AAAGATGTGGGGCAGAAACGACTGGGTAAACAACTGGGTACGGTGGTGCC
AGTAGCAGGAGGCATGAGTGCGACTGAGGAGAGCAAGCGTGAACAGGCAG
ACCTCGTGGCAAGACACGTTTGCGATTGATTGCATGCCTTTCATTTATTT
TTATCACCTCCCTCTCCCCCCCCCCCGACTTCCGGTACTTCCGATCTTCT
TTTCCTTTTTCGTTCCCCTGCTTCCTCTTTGTTCGGCGGCGGCCTGTTTG
TTGTGTTTGTCTACGAATGCACTCCCTCAGTCTTTGTGCCCTCCCTGTAT
CTTCTTTTTTATTATTTTTTTTGTCTTTCGTCTGTTGATCATGTAGTTAC
TGGGCCATCGCCCTGGTTTGCGTCTGCCTTGGTCTGTCATGGCCCTGGGC
CCTGGTTCGATGCACGAAGTACTTCGAAGTATATGGTTATGGTTGAGGTT
TGTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig621:45011..45765-

>mRNA_P-littoralis_Contig621.11.1 ID=mRNA_P-littoralis_Contig621.11.1|Name=mRNA_P-littoralis_Contig621.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig621:45011..45765- (Pylaiella littoralis U1_48)
TGGTACGACAGGATCGACGAGGGTGCGCGGCGGTTTACGGACGAGTGGCT
CAAGAAAGAGGGAGACCTATCAGAGACACGTCGACGGAAAAGAGAGAGGG
ACGCGGCTGAGAGGCAGGCCTTGACTAAAAGAGGGAGAACGGATGGCGAG
GATAAACGAGAGGAGGAGTACGGGGGGGCACAAGGGCAGCGGGGTAGTGG
GGTTGGAGTTGCACAACACAAGAAGAAGCAGTCCAATGCCAAGCTACGGG
GTGGCCGGAGTGGAAAACCTGTAGGGCGGAGTGGTGGTGTAGCTGCTGCC
AAAGATGTGGGGCAGAAACGACTGGGTAAACAACTGGGTACGGTGGTGCC
AGTAGCAGGAGGCATGAGTGCGACTGAGGAGAGCAAGCGTGAACAGGCAG
ACTTCCTCTTTGTTCGGCGGCGGCCTGTTTGTTGTGTTTGTCTACGAATG
CACTCCCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTTTTTATTATTTTT
TTTGTCTTTCGTCTGTTGA
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