mRNA_P-littoralis_Contig621.4.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig621.4.3
Unique NamemRNA_P-littoralis_Contig621.4.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig621.4.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig621contigP-littoralis_Contig621:33212..35207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1204
Hectar predicted targeting categoryother localisation
Exons2
Cds size816
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791297.8946521-UTR-P-littoralis_Contig621:33211..335161680791297.8946521-UTR-P-littoralis_Contig621:33211..33516Pylaiella littoralis U1_48UTRP-littoralis_Contig621 33212..33516 +
1680791297.930518-UTR-P-littoralis_Contig621:35124..352071680791297.930518-UTR-P-littoralis_Contig621:35124..35207Pylaiella littoralis U1_48UTRP-littoralis_Contig621 35125..35207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791297.9053948-CDS-P-littoralis_Contig621:33516..338821680791297.9053948-CDS-P-littoralis_Contig621:33516..33882Pylaiella littoralis U1_48CDSP-littoralis_Contig621 33517..33882 +
1680791297.920205-CDS-P-littoralis_Contig621:34674..351241680791297.920205-CDS-P-littoralis_Contig621:34674..35124Pylaiella littoralis U1_48CDSP-littoralis_Contig621 34675..35124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig621.4.3prot_P-littoralis_Contig621.4.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig621 33517..35124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig621.4.3

>prot_P-littoralis_Contig621.4.3 ID=prot_P-littoralis_Contig621.4.3|Name=mRNA_P-littoralis_Contig621.4.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=272bp
MADDGHVSKDAAVQGGAASEPPREAPSDTEADRLEQGHEHRHDATARQQQ
PGVVYRPSGRGPANGDLDDRIIMGSRPRGAPADDEVMPRTTVAMHAALMN
ILEGKKNGEDIPPGATAIINALFYHRTSSGPAASGLTKNNRGASSNNRGA
SSNNRGASSHNHGSSSGARSQSAKRTTSRPPPPAGVNVDDHKRDGRPYCN
YDGCKKPVRHFFWECFQKSSKGKKKAKTTTSAVSGSSKKPAHDSSSDDES
CCPAAVAPVVVGLFPVPPGKA*
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mRNA from alignment at P-littoralis_Contig621:33212..35207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig621.4.3 ID=mRNA_P-littoralis_Contig621.4.3|Name=mRNA_P-littoralis_Contig621.4.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1996bp|location=Sequence derived from alignment at P-littoralis_Contig621:33212..35207+ (Pylaiella littoralis U1_48)
ACTTCCGACTGATCCTCTGTCCTATCGTCTCGTCCCGAGACCGCGTCACT
CAACGGTCGTTGTAGCTCACTGGCTACAGCACTCTGCTGTCCGCAGAGAG
ACGGGCTCACTACCCTCCAGCGGCTTTATACGAACACATCCTTATTGGCG
TCGTACGGCTTGCTCAACCGAGCTTGCATGCCTGTGTTTCGTATTTTACC
TCGAGCCACTTCGCTCTGTTGAGTTCTCGAGTTCCTGTCCGGAAACAAAC
TCCAAACTGTCCGAAGTACCTATTTCTTTTCCACCCCCACGACATCATCA
ACACCATGGCTGACGACGGCCATGTCTCCAAAGATGCTGCAGTCCAAGGC
GGAGCTGCCAGCGAACCACCCCGCGAAGCTCCCTCTGACACCGAGGCTGA
CCGCCTAGAACAAGGGCACGAACACCGTCACGATGCGACAGCACGTCAAC
AACAGCCGGGTGTCGTCTATCGCCCCAGTGGTCGTGGTCCCGCAAACGGT
GATCTGGATGACCGGATCATCATGGGCAGCCGTCCCCGTGGCGCTCCGGC
CGACGATGAAGTCATGCCACGGACAACCGTCGCGATGCACGCTGCACTAA
TGAACATCCTCGAGGGCAAGAAAAATGGCGAGGACATCCCTCCGGGAGCG
ACCGCGATCATCAATGCGCTGGCAAGTCAGACTAATGTGTATCCTCATTA
CTTTTCGTAGACGGAGTGTCCACTCCCATGTCTGCGGTGTCACCACCTTT
GCGTACCGTCACCCTCACCCAGTCTGATGTCAAAAGACTTCTTTACTTGT
GCGGTAGTGTTGAGGTTGGCAACGGGTGATGTCGACGTTCTGTCCGTACT
TTAGCAGTACCGTGTGGTTGCTGGTTTTCGTGCTCAGACTGTCCGTCCGG
GTGATGAATCGTACGCTGACTCTGTCGCTTTTGAGTTTTTCAGTCTGATT
CTTGATGGCCCTGCAGCCACCATGTATCAGCAACTCATGTCCGGCTGCAT
CAACTGGCAAGCCACTGTCGTAGACACCGCTTCTTACTCACAGAATGCCG
GTTCGTCTACCCCTCCCTCCACCTGGAAGGAGTTGTCAAACGCTGTGCTT
GATCTCATGATGCCGAGCAACAGTGTTGAGGAATGTGCTCTCCGCCTCGC
GTCTTTCAAAATGGAGAAAAACGAATCAGTTCAAAATTATGCTCTTCGTT
GTAGGTCACTGACGTCGCGCTTTGAAGCGTCTGTTGAGCGGGCTAGTCCA
GGCATCACGCTCTGGACAGCCATGTCTCTTATCTTGTGGCAAAATGGTTT
AGCTCCGTCAATCCAATGTTTACAACTGTCTGAACAGCCGGTCTCCTCCT
TCCGCGAGGCTGTCGATCGTGCTCGTCGTCACGAGGCAGCTAGCCTCGTC
GGCGCTGTCTCCGCCATGTCCTTTACATATGTGCCCAATCGTGCTGCTGC
TCACCAAGAACAGTTCTACCACAGGACTTCGAGCGGACCCGCCGCCTCTG
GGCTGACCAAGAACAACCGCGGTGCGTCGTCCAACAACCGCGGTGCGTCG
TCCAACAACCGCGGAGCGTCGTCCCACAACCATGGCTCGTCATCGGGCGC
CCGTTCTCAGTCCGCCAAGAGAACCACCAGTCGCCCGCCGCCTCCTGCTG
GAGTCAACGTGGATGACCACAAGCGGGACGGGCGACCATATTGCAACTAC
GATGGCTGCAAGAAACCGGTAAGACACTTCTTCTGGGAGTGCTTCCAGAA
ATCTAGCAAGGGCAAGAAAAAGGCCAAGACTACCACCTCCGCTGTCTCGG
GTTCTTCGAAGAAACCCGCCCACGACAGCAGCAGCGATGATGAGTCATGT
TGCCCAGCTGCTGTAGCGCCTGTAGTAGTTGGGTTGTTTCCTGTTCCCCC
AGGAAAGGCGTGAAGAGAAGAAAATCTCTCTCCACGTCGGTAGCAGTCGG
TACCACTGGTCTAGTAGTACCCCGTGTAGGCGTCCGTCATGGCCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig621:33212..35207+

>mRNA_P-littoralis_Contig621.4.3 ID=mRNA_P-littoralis_Contig621.4.3|Name=mRNA_P-littoralis_Contig621.4.3|organism=Pylaiella littoralis U1_48|type=CDS|length=816bp|location=Sequence derived from alignment at P-littoralis_Contig621:33212..35207+ (Pylaiella littoralis U1_48)
ATGGCTGACGACGGCCATGTCTCCAAAGATGCTGCAGTCCAAGGCGGAGC
TGCCAGCGAACCACCCCGCGAAGCTCCCTCTGACACCGAGGCTGACCGCC
TAGAACAAGGGCACGAACACCGTCACGATGCGACAGCACGTCAACAACAG
CCGGGTGTCGTCTATCGCCCCAGTGGTCGTGGTCCCGCAAACGGTGATCT
GGATGACCGGATCATCATGGGCAGCCGTCCCCGTGGCGCTCCGGCCGACG
ATGAAGTCATGCCACGGACAACCGTCGCGATGCACGCTGCACTAATGAAC
ATCCTCGAGGGCAAGAAAAATGGCGAGGACATCCCTCCGGGAGCGACCGC
GATCATCAATGCGCTGTTCTACCACAGGACTTCGAGCGGACCCGCCGCCT
CTGGGCTGACCAAGAACAACCGCGGTGCGTCGTCCAACAACCGCGGTGCG
TCGTCCAACAACCGCGGAGCGTCGTCCCACAACCATGGCTCGTCATCGGG
CGCCCGTTCTCAGTCCGCCAAGAGAACCACCAGTCGCCCGCCGCCTCCTG
CTGGAGTCAACGTGGATGACCACAAGCGGGACGGGCGACCATATTGCAAC
TACGATGGCTGCAAGAAACCGGTAAGACACTTCTTCTGGGAGTGCTTCCA
GAAATCTAGCAAGGGCAAGAAAAAGGCCAAGACTACCACCTCCGCTGTCT
CGGGTTCTTCGAAGAAACCCGCCCACGACAGCAGCAGCGATGATGAGTCA
TGTTGCCCAGCTGCTGTAGCGCCTGTAGTAGTTGGGTTGTTTCCTGTTCC
CCCAGGAAAGGCGTGA
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