mRNA_P-littoralis_Contig621.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig621.3.1
Unique NamemRNA_P-littoralis_Contig621.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig621.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig621contigP-littoralis_Contig621:22909..23977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size574
Hectar predicted targeting categoryother localisation
Exons2
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791297.8393056-CDS-P-littoralis_Contig621:22910..234571680791297.8393056-CDS-P-littoralis_Contig621:22910..23457Pylaiella littoralis U1_48CDSP-littoralis_Contig621 22911..23457 -
1680791297.8547802-CDS-P-littoralis_Contig621:23954..239771680791297.8547802-CDS-P-littoralis_Contig621:23954..23977Pylaiella littoralis U1_48CDSP-littoralis_Contig621 23955..23977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig621.3.1prot_P-littoralis_Contig621.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig621 22911..23977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig621.3.1

>prot_P-littoralis_Contig621.3.1 ID=prot_P-littoralis_Contig621.3.1|Name=mRNA_P-littoralis_Contig621.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp
QWNPIWDGLHNTDGKKKSGKQEEDVMQGLHEEIRRQTQEEKRIARDLAKS
NKKKTAFAKAAEGAGDDARAVSLAAGKTEEESDAVAAEAKAASLAGAAAQ
VKAQLAAVAGAKAALKAKADAGDTPASLAIAAAAKAKVEAEAPGPMPPNY
VHKYSLLFAVLGTPAGPGNQHHQLSAALSSGPTAAPAGVG
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mRNA from alignment at P-littoralis_Contig621:22909..23977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig621.3.1 ID=mRNA_P-littoralis_Contig621.3.1|Name=mRNA_P-littoralis_Contig621.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1069bp|location=Sequence derived from alignment at P-littoralis_Contig621:22909..23977- (Pylaiella littoralis U1_48)
CAGTGGAACCCCATTTGGGACGGGTGAGTGACTCGAAGAAGTGCCATCTA
TGTCGTGATGTGTTGTGGCAGATTTGCGTCCGGGCAAAACAGCAACATTA
TCATGAGTCGAAGTACACATCAACAACAGACGGTGATACCCGGGGGTTTT
AGGGATGCTGCTCCTGTTGGCGATACCCGGGAACTTGTGTAGGTTTGTTT
TAGTCGGTGATACCCGAGGACGGGGGGGAAGATAAGCGATGCCATCGCCC
GTAAACCTTCGCGCCACACAATATACAGTTGAAATCCCCCGATTTGATAC
AAACCATTTCGGTGTTCCTTGGGAGGCGGTGTAAATGTCCCTCGAATTAT
GCTTCACGTGGCAAGTGGATCTCGTGGTCTGAGTTAGTTTTGTAGTTGCA
CTTTTTAACAAGCGCTTCGTTCATCACTCGTAGCGGCGCCCCTAGGAAGC
CACTTTTGCTAATGACGTAACACAACCTTGTCATTGCTCGAACGATGTTG
CCGCTGTGTTCCCCATGCAGATTGCACAACACGGACGGCAAGAAGAAGTC
AGGAAAACAGGAGGAAGACGTCATGCAGGGTCTCCATGAGGAAATCCGGA
GGCAGACCCAGGAAGAAAAGAGGATTGCCAGGGATCTCGCCAAAAGCAAC
AAGAAGAAGACTGCTTTCGCCAAGGCCGCCGAAGGCGCTGGGGATGACGC
CCGGGCGGTGTCCTTGGCCGCAGGCAAGACGGAGGAAGAGTCCGACGCGG
TCGCAGCCGAGGCGAAAGCGGCATCCTTGGCGGGCGCAGCCGCGCAGGTG
AAGGCACAATTGGCGGCCGTTGCCGGGGCAAAAGCGGCGTTGAAGGCCAA
AGCTGATGCCGGGGATACGCCAGCGTCCTTGGCGATCGCTGCTGCGGCCA
AGGCGAAGGTAGAGGCGGAAGCACCTGGTCCCATGCCACCGAACTACGTG
CACAAGTACAGCCTCCTCTTCGCCGTGTTGGGGACGCCGGCGGGGCCCGG
GAACCAGCACCACCAGCTGTCTGCCGCACTTTCTTCTGGCCCAACAGCCG
CACCCGCGGGGGTTGGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig621:22909..23977-

>mRNA_P-littoralis_Contig621.3.1 ID=mRNA_P-littoralis_Contig621.3.1|Name=mRNA_P-littoralis_Contig621.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig621:22909..23977- (Pylaiella littoralis U1_48)
CAGTGGAACCCCATTTGGGACGGATTGCACAACACGGACGGCAAGAAGAA
GTCAGGAAAACAGGAGGAAGACGTCATGCAGGGTCTCCATGAGGAAATCC
GGAGGCAGACCCAGGAAGAAAAGAGGATTGCCAGGGATCTCGCCAAAAGC
AACAAGAAGAAGACTGCTTTCGCCAAGGCCGCCGAAGGCGCTGGGGATGA
CGCCCGGGCGGTGTCCTTGGCCGCAGGCAAGACGGAGGAAGAGTCCGACG
CGGTCGCAGCCGAGGCGAAAGCGGCATCCTTGGCGGGCGCAGCCGCGCAG
GTGAAGGCACAATTGGCGGCCGTTGCCGGGGCAAAAGCGGCGTTGAAGGC
CAAAGCTGATGCCGGGGATACGCCAGCGTCCTTGGCGATCGCTGCTGCGG
CCAAGGCGAAGGTAGAGGCGGAAGCACCTGGTCCCATGCCACCGAACTAC
GTGCACAAGTACAGCCTCCTCTTCGCCGTGTTGGGGACGCCGGCGGGGCC
CGGGAACCAGCACCACCAGCTGTCTGCCGCACTTTCTTCTGGCCCAACAG
CCGCACCCGCGGGGGTTGGT
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