mRNA_P-littoralis_Contig620.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.60.1
Unique NamemRNA_P-littoralis_Contig620.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig620.60.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 3.820e-5
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 MSKRELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQAR 126
            M +  LG A    E ++++LDPRFK CC+S C++GG+AL+ R
Sbjct:  639 MEESGLGRAREDTEAVSMLLDPRFKQCCASTCVDGGSALKLR 680
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G031_ECTSI3.820e-547.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:169896..170093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791297.7569726-CDS-P-littoralis_Contig620:169895..1700931680791297.7569726-CDS-P-littoralis_Contig620:169895..170093Pylaiella littoralis U1_48CDSP-littoralis_Contig620 169896..170093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.60.1prot_P-littoralis_Contig620.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 169896..170093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.60.1

>prot_P-littoralis_Contig620.60.1 ID=prot_P-littoralis_Contig620.60.1|Name=mRNA_P-littoralis_Contig620.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
MSKRELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQARVAVDVEGA
FDYFLGYTKAQSEEQG
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mRNA from alignment at P-littoralis_Contig620:169896..170093-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.60.1 ID=mRNA_P-littoralis_Contig620.60.1|Name=mRNA_P-littoralis_Contig620.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig620:169896..170093- (Pylaiella littoralis U1_48)
ATGTCCAAGAGGGAGCTGGGGTCTGCGACGCTGTCGCCCGAGACGATCAA
CCTGGTGCTCGATCCCCGCTTCAAGTCCTGCTGCTCGAGCGTGTGCTTGA
ACGGGGGCGCAGCACTTCAAGCGCGAGTGGCCGTCGACGTCGAGGGGGCC
TTCGACTACTTCCTTGGGTACACGAAGGCGCAGAGTGAGGAACAGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig620:169896..170093-

>mRNA_P-littoralis_Contig620.60.1 ID=mRNA_P-littoralis_Contig620.60.1|Name=mRNA_P-littoralis_Contig620.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig620:169896..170093- (Pylaiella littoralis U1_48)
ATGTCCAAGAGGGAGCTGGGGTCTGCGACGCTGTCGCCCGAGACGATCAA
CCTGGTGCTCGATCCCCGCTTCAAGTCCTGCTGCTCGAGCGTGTGCTTGA
ACGGGGGCGCAGCACTTCAAGCGCGAGTGGCCGTCGACGTCGAGGGGGCC
TTCGACTACTTCCTTGGGTACACGAAGGCGCAGAGTGAGGAACAGGGT
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