mRNA_P-littoralis_Contig116.114.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.114.2
Unique NamemRNA_P-littoralis_Contig116.114.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig116.114.2 vs. uniprot
Match: A0A6H5L6L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6L6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.330e-28
Identity = 75/168 (44.64%), Postives = 98/168 (58.33%), Query Frame = 1 
Query:  100 IKEFSETISAEDDSNDLGEEKERSKTAASESIDERQQXXXXXPRTXXDEEYERDSAQRKKNXXXXXXXXXXXXXXXXXXXXXWGGLLVKKKIQFEAGDLIEAEWRTTGWWYVGYVQGDPE--GQE---GSNGAAAAKSRARKQDLFHVVFADGDEADVPGKNLKRLEP 588
             KE+S++ S  D++ND  E KE ++T   E  DE +       RT  D+E+E D AQ+KKN                     W  LL +KK QFE GDL+EAEW  TGWWYVGY++   E  G+E   G+ GA  AK+  R ++LFHVVF DGDEADV  ++LKRL+P
Sbjct:   48 FKEYSDSAS-HDENNDTAEAKESAETKLPE--DEEESGDDDWHRTASDQEHEMDVAQQKKNRRTRAQPGAKRGGRRDTERGGWFQLLGRKKTQFEPGDLVEAEWAGTGWWYVGYIRSASEERGEESAGGTPGAPQAKTSKRSKELFHVVFEDGDEADVIRRDLKRLQP 212
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BLAST of mRNA_P-littoralis_Contig116.114.2 vs. uniprot
Match: D8LF78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF78_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.070e-21
Identity = 70/169 (41.42%), Postives = 92/169 (54.44%), Query Frame = 1 
Query:  100 IKEFSETISAEDDSNDLGEEKERSKTAASESIDERQQXXXXXPRTXXDEEYERDSAQRKKNXXXXXXXXXXXXXXXXXXXXXWGGLLVKKKIQFEAGDLIEAEWRTTGWWYVGYVQGDPEGQEGSNGAAA------AKSRARKQDLFHVVFADGDEADVPGKNLKRLEP 588
            I+E+S++ S +D++ND  E KE ++T   E  D  +    XX   XX   +E D AQ+KKN                     W  LL +KK QFE GDL+EAEW  TGWWYVGY+ G   G+              AK+  R ++LFHVVF DGDEADV  ++LKRL+P
Sbjct:   49 IREYSDSAS-DDENNDTAEAKESAETKRVE--DREESGDDXXXXXXXXXXHEMDMAQQKKNRRARAQPGAKGGGRRDTGRGGWFQLLGRKKTQFEPGDLVEAEWAGTGWWYVGYI-GSGSGERXXXXXXXXXXXPQAKTSKRSKELFHVVFEDGDEADVIRRDLKRLQP 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.114.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6L6_9PHAE3.330e-2844.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF78_ECTSI1.070e-2141.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:433736..434764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size710
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_001970.1
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789481.6563482-CDS-P-littoralis_Contig116:433735..4338391680789481.6563482-CDS-P-littoralis_Contig116:433735..433839Pylaiella littoralis U1_48CDSP-littoralis_Contig116 433736..433839 -
1680789481.673764-CDS-P-littoralis_Contig116:434160..4347641680789481.673764-CDS-P-littoralis_Contig116:434160..434764Pylaiella littoralis U1_48CDSP-littoralis_Contig116 434161..434764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.114.2prot_P-littoralis_Contig116.114.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 433736..434764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.114.2

>prot_P-littoralis_Contig116.114.2 ID=prot_P-littoralis_Contig116.114.2|Name=mRNA_P-littoralis_Contig116.114.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=236bp
MDENEESASAASNDRNAGENVQETNVTTGSPSLIKEFSETISAEDDSNDL
GEEKERSKTAASESIDERQQEDRPKPRTAADEEYERDSAQRKKNRRARRQ
PGAKRGGRRETRRGGWGGLLVKKKIQFEAGDLIEAEWRTTGWWYVGYVQG
DPEGQEGSNGAAAAKSRARKQDLFHVVFADGDEADVPGKNLKRLEPMTDK
NGQPTGSGDGQLPRHVPVADLGSGRLHCNVDLPLYQ
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mRNA from alignment at P-littoralis_Contig116:433736..434764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.114.2 ID=mRNA_P-littoralis_Contig116.114.2|Name=mRNA_P-littoralis_Contig116.114.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1029bp|location=Sequence derived from alignment at P-littoralis_Contig116:433736..434764- (Pylaiella littoralis U1_48)
ATGGACGAGAATGAAGAGAGCGCTTCAGCTGCAAGCAACGACAGAAATGC
AGGAGAAAATGTGCAAGAAACCAATGTCACCACAGGTTCTCCTTCACTCA
TAAAAGAATTTTCGGAGACGATCTCTGCCGAAGATGACAGCAACGACCTA
GGGGAGGAAAAAGAGAGAAGCAAAACAGCCGCATCGGAGAGTATTGACGA
GAGACAACAAGAAGACCGTCCTAAACCACGCACCGCAGCCGACGAAGAAT
ACGAGAGGGATTCGGCGCAGCGGAAGAAGAATAGACGCGCAAGACGCCAA
CCAGGAGCAAAGCGCGGAGGGCGCAGGGAAACCAGAAGGGGTGGTTGGGG
TGGGTTGTTGGTGAAAAAGAAGATCCAATTCGAGGCCGGTGACCTTATTG
AAGCCGAGTGGAGAACCACGGGTTGGTGGTACGTAGGGTATGTACAGGGA
GACCCCGAGGGACAAGAGGGTTCAAACGGTGCTGCTGCAGCGAAATCCAG
AGCACGGAAGCAGGATCTGTTTCATGTGGTGTTCGCAGATGGGGACGAAG
CCGACGTACCGGGGAAGAATTTGAAACGATTGGAGCCTATGACAGATAAA
AACGGTAAGGGCAGAACTTCAACAATCGGATGTTCAATGTAGAACAAACC
TTATCCCCCGAGCTTGTCCCGTTGGTGGAGCATGCCAAAGCGCCACATGT
TGTACCTTCTGAAACGTTTCCAGTACCGTCATCAACATCCTTATGGCATG
AACTACACATACACGCACACACGCCTGGTAAAAAAACAATTTTCAGAGTT
AACATTACTCAATTGAGTGTGTGTGTGCGCAATTATTTTTTGAAGTGCAA
GCATTTGCATGCCTCATTTTGTCATCATCGCTTCTCTCCGTTTTCTGCTG
GGGGGGCGGGGGAACGAACTCATAGGTCAGCCGACAGGAAGCGGCGACGG
ACAGTTGCCTCGGCATGTGCCGGTGGCCGACCTCGGGTCGGGACGTCTAC
ACTGCAACGTCGACCTGCCTTTGTACCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:433736..434764-

>mRNA_P-littoralis_Contig116.114.2 ID=mRNA_P-littoralis_Contig116.114.2|Name=mRNA_P-littoralis_Contig116.114.2|organism=Pylaiella littoralis U1_48|type=CDS|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig116:433736..434764- (Pylaiella littoralis U1_48)
ATGGACGAGAATGAAGAGAGCGCTTCAGCTGCAAGCAACGACAGAAATGC
AGGAGAAAATGTGCAAGAAACCAATGTCACCACAGGTTCTCCTTCACTCA
TAAAAGAATTTTCGGAGACGATCTCTGCCGAAGATGACAGCAACGACCTA
GGGGAGGAAAAAGAGAGAAGCAAAACAGCCGCATCGGAGAGTATTGACGA
GAGACAACAAGAAGACCGTCCTAAACCACGCACCGCAGCCGACGAAGAAT
ACGAGAGGGATTCGGCGCAGCGGAAGAAGAATAGACGCGCAAGACGCCAA
CCAGGAGCAAAGCGCGGAGGGCGCAGGGAAACCAGAAGGGGTGGTTGGGG
TGGGTTGTTGGTGAAAAAGAAGATCCAATTCGAGGCCGGTGACCTTATTG
AAGCCGAGTGGAGAACCACGGGTTGGTGGTACGTAGGGTATGTACAGGGA
GACCCCGAGGGACAAGAGGGTTCAAACGGTGCTGCTGCAGCGAAATCCAG
AGCACGGAAGCAGGATCTGTTTCATGTGGTGTTCGCAGATGGGGACGAAG
CCGACGTACCGGGGAAGAATTTGAAACGATTGGAGCCTATGACAGATAAA
AACGGTCAGCCGACAGGAAGCGGCGACGGACAGTTGCCTCGGCATGTGCC
GGTGGCCGACCTCGGGTCGGGACGTCTACACTGCAACGTCGACCTGCCTT
TGTACCAA
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