mRNA_P-littoralis_Contig620.38.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.38.2
Unique NamemRNA_P-littoralis_Contig620.38.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: A0A6H5L781_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L781_9PHAE)

HSP 1 Score: 564 bits (1454), Expect = 3.180e-191
Identity = 317/485 (65.36%), Postives = 358/485 (73.81%), Query Frame = 1 
Query:   82 LSIPVRSVASCLLTLLVHGTIRAGEGALDQNPGLYSLYSQLQPIHQRQDHAQKRS---------------AGTRGILETLRGGANPNNRRRKHSSRAVEQQPGRGSGSDSSSGGASSPEAIEISGAELSDSSSNTGGGVGRAKQFQQQHIDGIYLREWDVNGAPHFKRRSKRGSRSSPVHLFFTGNEWMLHLDVDANLDINHCLAYSEVSELNPLRTTRKWAVRVGQAWVRRPHMRLAEASPDAQE---------ESRGSTGINRYDGHGSGNSVVVDGGPGTGEDASSPSRRLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTMTILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEETKSGETGVSQLWKRR 1464
            L  P R ++SCL+ LL +G  +AGEGALDQ P       Q+ P + +Q                      + T  +LE + G                         +        +P+AIE+SGA+L++S++         +  QQQH+DG+Y+REWDVNGAPHFKRRSKRGSRSSPVHLFFTG+EWMLHLDVDANLDINHCLAYSEV+E+NPLRTTRKWAVRVGQAWVRRPHMRLAE SP A+          ESR S G NRY G  S ++ +         D ++ SRRLLPLY VFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGN+SDVVGRKPVVIGCLLGTV+SHIMVARS+TL GVA GRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLG+IQACVGLGFVLGPMTMTILHRL KVST DTFYAAALFPL GLFYAMFK+EETKSGETG+SQ+WK+R
Sbjct:    8 LFAPTRRLSSCLIALLTYGVAQAGEGALDQRP------KQIHPSYLQQXXXXXXXXXXXXXXQLQLTPAVSTTAKLLERITGXXXXXXXXXXXXXXXXXXXXXXXXXA--------APDAIEVSGADLAESTNG--------RSSQQQHLDGVYVREWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPGAEPRVPAWKAKAESRASAGANRYSG--SSDNGLASAEAQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNMSDVVGRKPVVIGCLLGTVVSHIMVARSTTLAGVAWGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGRIQACVGLGFVLGPMTMTILHRLFKVSTADTFYAAALFPLVGLFYAMFKIEETKSGETGLSQMWKKR 468
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: D8LSY3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY3_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 1.600e-104
Identity = 194/338 (57.40%), Postives = 227/338 (67.16%), Query Frame = 1 
Query:   82 LSIPVRSVASCLLTLLVHGTIRAGEGALDQNPG--LYSLYSQLQPIHQ--------RQDHAQKRSAGTRGILETLRGGANPNNRRRKHSSRAVEQQPGRGSGSDSSSGGASSPEAIEISGAELSDSSSNTGGGVGRAKQFQQQHIDGIYLREWDVNGAPHFKRRSKRGSRSSPVHLFFTGNEWMLHLDVDANLDINHCLAYSEVSELNPLRTTRKWAVRVGQAWVRRPHMRLAEASPDAQ---------EESRGSTGINRYDGHGSGNSVVVDGGPGTGEDASSPSRRLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG 1038
            L  P R ++SCL+ LL +G  +AGEGALDQ P   ++  Y Q Q +           Q       + T  +L+ + GGAN +                            ++P+AIE+SGA+ ++S++         +  QQQH+DG+Y+R WDVNGAPHFKRRSKRGSRSSPVHLFFTG+EWMLHLDVDANLDINHCLAYSEV+E+NPLRTTRKWAVRVGQAWVRRPHMRLAE SPDA+         EESR S G NRY G  SGN +         +DA+  SRRLLPLY VFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG
Sbjct:    8 LFAPTRRLSSCLVALLTYGVAQAGEGALDQRPQQQIHPSYLQQQQLXXXXXXXXXAEQLQLTPAVSTTAKLLDRITGGANSHXXXXXXXXXXXXXX-------XXXXXXXAAPDAIEVSGADFAESTNG--------RSSQQQHLDGVYVRGWDVNGAPHFKRRSKRGSRSSPVHLFFTGSEWMLHLDVDANLDINHCLAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRASAGANRYGGS-SGNGLASAEAQKAIDDAAL-SRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG 328
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: A0A4D9D6H6_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6H6_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.360e-57
Identity = 126/347 (36.31%), Postives = 197/347 (56.77%), Query Frame = 1 
Query:  484 IDGIYLR-EWDVNGAPHFKRR------------SKRGSRSSPVHLFFTGNEWMLHLDVDANLDINHCLAYSEVSELNPLRTTRKWAVRVGQAWVRRPHMRLAEASPDAQEESRGSTGINRYDGHGSGNSVVVDGGPGTGEDASSPSR-RLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTMTILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEETKSGETGVSQLWKRRPGASTS 1482
            I+G++ R +WD NG  H+++             S        VHL++ G++W+LHLD+D  L+ ++ L Y +V+  +P RT R W +R  + W+  P   L    P  Q E R                   +        AS P+  RL+P+++ F LDAVG G+A P+LPF++M L A A QL +V++ NY+AQT GC++ G++SD  GR+ V++ CL+ + +S  +VAR+ TL  VA+GRVIGG+ GG  P+AQ+AVAD+VPV+   KFLG+IQAC+G GFV GP+   +  R L + +      AA+ P     Y +  ++ETK     + + ++++   + S
Sbjct:   78 INGVFTRTDWDHNGRAHYEKVMTSEEMTLAQEFSVFAEERRVVHLYWHGSQWVLHLDLDPALNYDNYLGYCKVNSRDPGRTDRSWLLRENKKWL--PATSLRVHVPGRQYEKR------------------EESASAAAALASIPTPPRLVPVFIAFFLDAVGTGLASPLLPFYIMSLGANAFQLGLVLAFNYLAQTIGCIVMGSISDRCGRRQVMLCCLMASFVSLSLVARAKTLPQVAIGRVIGGMFGGFVPLAQSAVADLVPVEGRAKFLGRIQACMGAGFVAGPLLGLLGSRGLHLDSRGILKRAAILPALAFSYGLVFIKETKDA-VAIDRTFRKKESRAAS 403
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: A0A482SL66_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL66_9ARCH)

HSP 1 Score: 166 bits (419), Expect = 3.560e-41
Identity = 106/285 (37.19%), Postives = 160/285 (56.14%), Query Frame = 1 
Query:  571 VHLFFTGNEWMLHLDVDANLDINHCLAYSEVSELNPLRTTRKWAVRVGQAWVRRPHMRLAEASPDAQEESRGSTGINRYDGHGSGNSVVVDGGPGTGEDASSPSRRLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTMTILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEETK 1425
            ++LF+TG+ W L      + + +  LAYSE ++   +  T  W V++G+ +   P M +   +P+ Q+ +               N    D      ++     R+LLP YV F+LDA+ +G+ +P+LPFFVMGL A A QL++VVSSNYIAQ+ GC++ G +SD  GRK V+  CL  + +S++ + ++ +L+GV   R+I G  GGL PI Q+ VAD   V+  PK+LG+I A  GLGFVLGP     L  L  ++T      A+  P  GL   +   +ETK
Sbjct:    1 MYLFWTGSVWALSYQ-SPHSNQSDLLAYSESNKPEIMSGT-SWYVKLGKKFELSPLMGVN--APEKQKVNEDEED----------NETQADSTDSDNKEVLGVPRQLLPYYVAFMLDAIAVGLVMPLLPFFVMGLGADAFQLSMVVSSNYIAQSIGCLVMGRVSDYYGRKLVMTVCLTASALSYLSLCQARSLVGVVFARLISGSFGGLIPIMQSTVADTAEVEQRPKYLGRIMATFGLGFVLGPA----LSALPSLTTSQKIMLASFMPAIGLLVVLIWGQETK 267
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: A0A7X4DZL4_9BACT (MFS transporter n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4DZL4_9BACT)

HSP 1 Score: 103 bits (257), Expect = 2.980e-20
Identity = 67/187 (35.83%), Postives = 102/187 (54.55%), Query Frame = 1 
Query:  886 RLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTMTILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEETKSGETGVS 1446
            RL  L++  ++D VG G+ LP+LPF+     A  L+  ++V+   + Q     + G LSD VGR+PV+I  LLG+  ++I+ AR+ +L  + L R+IGG+ G   P+AQA +ADV P +     +G I A  GLGFV+GP    IL      +     Y AA   LA    A+  + E+++     S
Sbjct:   11 RLGVLFLTVLVDLVGFGIVLPILPFYARSFGADGLETGLLVAVYSLVQLVMAPLWGRLSDRVGRRPVLILGLLGSAAAYIVFARADSLAVLFLSRIIGGIGGSTIPVAQAYIADVTPPERRAGNMGLIGAAFGLGFVIGPFLGGILSESSPGAPTIPGYTAAALCLANAIVAILFLPESRARGAATS 197
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: A0A7X4DJ00_9BACT (MFS transporter n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4DJ00_9BACT)

HSP 1 Score: 101 bits (252), Expect = 1.580e-19
Identity = 66/190 (34.74%), Postives = 101/190 (53.16%), Query Frame = 1 
Query:  877 PSRRLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTMTILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEETKSGETGVS 1446
            P  RL  L+   ++D +G G+ LPVLPF+     A   Q+ ++ +   + Q     + G LSD VGR+P++I  LLG+ +++ + AR+ +L  + + R++GG+ G   P+AQA +ADV P       LG I A  GLGFV+GP    IL  +   S     Y AA   LA    A+  + E++   T  S
Sbjct:   23 PGSRLGVLFFAVLVDLIGFGIVLPVLPFYARDFGADYQQVGLLYAIYSLVQLVMAPLWGRLSDRVGRRPIIILGLLGSALAYTIFARADSLAMLFVSRIVGGIGGSTIPVAQAYIADVTPPGRRAGGLGLIGAAFGLGFVIGPALGGILSGVSPGSPAAPGYTAAALCLANALAALVWLPESRRPATSGS 212
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: A0A6N9A725_9BACT (MFS transporter n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N9A725_9BACT)

HSP 1 Score: 100 bits (250), Expect = 2.850e-19
Identity = 71/209 (33.97%), Postives = 109/209 (52.15%), Query Frame = 1 
Query:  832 VVVDGGPGTGEDASSPSRRLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTM-TILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEETKS--GETGVSQ 1449
            + V GG G G        RL  L+   ++D +G G+ LP+LP +  G  A  L+  +++S   + Q     + G LSD  GR+P++I  LLG+ +++ + AR+ +L  + L R+IGG+ G   P+AQA +ADV P +     +G I A  GLGFV+GP+    IL  L         Y AA   LA    A+  + E++   G T  S+
Sbjct:   13 LTVRGGKGDG------GHRLGILFATVLVDLIGFGIVLPILPLYAAGFGARGLETGLLISVYSLVQLVMAPLWGRLSDRFGRRPILILGLLGSAVAYFIFARADSLAMLFLSRIIGGIGGSTIPVAQAYIADVTPPERRAGNMGLIGAAFGLGFVIGPLLGGPILSPLSPGEPTVPGYTAAALCLANAIAAILWLPESRGRGGATTASR 215
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: A0A7W1P556_9BACT (MFS transporter n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1P556_9BACT)

HSP 1 Score: 100 bits (249), Expect = 3.280e-19
Identity = 65/193 (33.68%), Postives = 104/193 (53.89%), Query Frame = 1 
Query:  880 SRRLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTMTILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEETKSGETGVSQLWK 1458
            SR LL L++   ++ VG G+ +P+LPF+     A+   + ++ +S  ++Q     + G+LSD +GR+PV+I  LLGTV+S +M+A + +L  + L R+I GVTGG    A+A +ADV   Q   K  G + A  GLGF++GP        +    T   + AAA+  +A L   ++  E       G    W+
Sbjct:    2 SRPLLVLFLTTFVNLVGFGIIIPLLPFYAQTFGASPFVIGLLFASFSLSQLIAAPVLGDLSDRIGRRPVLIASLLGTVVSFVMLALAGSLAMLFLARIIDGVTGGSITTARAYIADVTAEQDRAKAFGLLGAAFGLGFIVGPALGAAFAHISY--TAPIWAAAAITVIATLVAWLWLPETAHHVRVGGGSPWQ 192
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: UPI0019A79547 (MFS transporter n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI0019A79547)

HSP 1 Score: 100 bits (250), Expect = 4.060e-19
Identity = 65/183 (35.52%), Postives = 101/183 (55.19%), Query Frame = 1 
Query:  895 PLYVVFV---LDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTMTILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEETKSGE 1434
            PL ++F+   +D +G G+ +PVLP +     A+A  + ++V+S  I Q     I G LSD  GR+P++   LLGT +  +++  ++TL  + LGR++ G+TGG    AQA +ADV  +++  K +G + A  GLGFVLGP+   +L    K      FY AA   LA      F + E+   E
Sbjct:   24 PLTIIFITVLIDLIGFGIVIPVLPIYSAEFGASATTIGLLVASYSIMQFIFTPILGQLSDRYGRRPILFFSLLGTSLGFLILGLANTLFLLFLGRILDGITGGNISTAQAYIADVTTIENRAKGMGLLGAAFGLGFVLGPLIGGVLS---KYGVHVPFYFAAAMALANAILLYFVLPESLKKE 203
[Close]
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Match: A0A6N8V4J5_9BACT (TCR/Tet family MFS transporter n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V4J5_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 1.870e-18
Identity = 64/187 (34.22%), Postives = 99/187 (52.94%), Query Frame = 1 
Query:  883 RRLLPLYVVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVISHIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQIQACVGLGFVLGPMTMTILHRLLK-VSTGDTFYAAALFPLAGLFYAMFKMEETKSGETG 1440
             RL+ L+   +LD VG G+ LP+LP +     A  L   ++VS   + Q     + G +SD +GR+PV++  L G+ +++++ AR+ +L  + L R++GG+ G   P+AQA +ADV P +     +G I A  GLGFV+GP    IL  L     T   + AA L     L   +F  E  + G  G
Sbjct:    6 HRLVVLFFTVLLDLVGFGIVLPLLPLYARDFGADGLLTGLLVSIYSLVQLVMAPVWGRISDRIGRRPVLLLGLFGSGVAYLVFARADSLAILFLSRIVGGIGGSTIPVAQAYIADVTPPEKRAGNMGLIGAAFGLGFVVGPFLGGILSGLSPGAPTAPGYTAATLCAANALAAILFLPESRERGAAG 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.38.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L781_9PHAE3.180e-19165.36MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSY3_ECTSI1.600e-10457.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A4D9D6H6_9STRA2.360e-5736.31MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A482SL66_9ARCH3.560e-4137.19MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A7X4DZL4_9BACT2.980e-2035.83MFS transporter n=2 Tax=Gemmatimonadetes bacterium... [more]
A0A7X4DJ00_9BACT1.580e-1934.74MFS transporter n=1 Tax=Gemmatimonadetes bacterium... [more]
A0A6N9A725_9BACT2.850e-1933.97MFS transporter n=3 Tax=Gemmatimonadetes bacterium... [more]
A0A7W1P556_9BACT3.280e-1933.68MFS transporter n=1 Tax=Acidobacteria bacterium Ta... [more]
UPI0019A795474.060e-1935.52MFS transporter n=1 Tax=Pyrinomonadaceae bacterium... [more]
A0A6N8V4J5_9BACT1.870e-1834.22TCR/Tet family MFS transporter n=2 Tax=Gemmatimona... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:90831..97056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog251221.35212055
PFAMsMFS_1,Sugar_tr
Model size1634
Max annot lvl1117|Cyanobacteria
KEGG koko:K08151
KEGG TC2.A.1.2.38,2.A.1.2.39,2.A.1.2.4,2.A.1.2.41,2.A.1.2.68,2.A.1.2.75
KEGG ModuleM00668
Hectar predicted targeting categorysignal peptide
Exons6
Evalue2.08e-19
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1G41I@1117|Cyanobacteria
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001860.1
DescriptionMultidrug efflux transporter
Cds size1563
COG categoryEGP
BRITEko00000,ko00002,ko01504,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.38.2prot_P-littoralis_Contig620.38.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 90900..97056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.962555-UTR-P-littoralis_Contig620:90830..908991680791296.962555-UTR-P-littoralis_Contig620:90830..90899Pylaiella littoralis U1_48UTRP-littoralis_Contig620 90831..90899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.9775558-CDS-P-littoralis_Contig620:90899..913791680791296.9775558-CDS-P-littoralis_Contig620:90899..91379Pylaiella littoralis U1_48CDSP-littoralis_Contig620 90900..91379 +
1680791296.989151-CDS-P-littoralis_Contig620:93369..934801680791296.989151-CDS-P-littoralis_Contig620:93369..93480Pylaiella littoralis U1_48CDSP-littoralis_Contig620 93370..93480 +
1680791296.9988487-CDS-P-littoralis_Contig620:94454..945651680791296.9988487-CDS-P-littoralis_Contig620:94454..94565Pylaiella littoralis U1_48CDSP-littoralis_Contig620 94455..94565 +
1680791297.0081775-CDS-P-littoralis_Contig620:94926..951911680791297.0081775-CDS-P-littoralis_Contig620:94926..95191Pylaiella littoralis U1_48CDSP-littoralis_Contig620 94927..95191 +
1680791297.0198138-CDS-P-littoralis_Contig620:95458..956521680791297.0198138-CDS-P-littoralis_Contig620:95458..95652Pylaiella littoralis U1_48CDSP-littoralis_Contig620 95459..95652 +
1680791297.0293765-CDS-P-littoralis_Contig620:96654..970561680791297.0293765-CDS-P-littoralis_Contig620:96654..97056Pylaiella littoralis U1_48CDSP-littoralis_Contig620 96655..97056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.38.2

>prot_P-littoralis_Contig620.38.2 ID=prot_P-littoralis_Contig620.38.2|Name=mRNA_P-littoralis_Contig620.38.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=521bp
MHKLLSIPVRSVASCLLTLLVHGTIRAGEGALDQNPGLYSLYSQLQPIHQ
RQDHAQKRSAGTRGILETLRGGANPNNRRRKHSSRAVEQQPGRGSGSDSS
SGGASSPEAIEISGAELSDSSSNTGGGVGRAKQFQQQHIDGIYLREWDVN
GAPHFKRRSKRGSRSSPVHLFFTGNEWMLHLDVDANLDINHCLAYSEVSE
LNPLRTTRKWAVRVGQAWVRRPHMRLAEASPDAQEESRGSTGINRYDGHG
SGNSVVVDGGPGTGEDASSPSRRLLPLYVVFVLDAVGLGVALPVLPFFVM
GLKATALQLAIVVSSNYIAQTFGCVITGNLSDVVGRKPVVIGCLLGTVIS
HIMVARSSTLMGVALGRVIGGVTGGLTPIAQAAVADVVPVQSLPKFLGQI
QACVGLGFVLGPMTMTILHRLLKVSTGDTFYAAALFPLAGLFYAMFKMEE
TKSGETGVSQLWKRRPGASTSPSSSSSLPSSSKLSAAAAAVEAERRRAKE
GRDRALASSRRRRRRHGEEVG
back to top

mRNA from alignment at P-littoralis_Contig620:90831..97056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.38.2 ID=mRNA_P-littoralis_Contig620.38.2|Name=mRNA_P-littoralis_Contig620.38.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6226bp|location=Sequence derived from alignment at P-littoralis_Contig620:90831..97056+ (Pylaiella littoralis U1_48)
CGGAAGGCATAACAGATAAAGCAAGCGACACTACCACGCGCGTGCGGAGC
GGAGAACATTTACTAAACGATGCACAAATTACTGTCTATTCCAGTGAGAA
GCGTTGCATCATGCTTGCTGACTCTGCTGGTGCACGGCACCATTCGAGCG
GGAGAGGGAGCTCTCGACCAAAACCCGGGGTTGTACTCGTTGTATTCACA
ACTGCAACCAATTCACCAACGTCAAGACCACGCTCAGAAGCGCTCAGCAG
GAACAAGGGGCATCCTCGAGACCCTCAGAGGGGGTGCGAACCCGAACAAC
CGTCGCCGCAAGCACTCCTCTCGTGCTGTGGAACAGCAGCCGGGGCGCGG
CAGTGGCAGCGACAGCAGCAGCGGGGGGGCTTCGTCGCCTGAGGCTATAG
AAATCTCCGGAGCGGAGCTATCTGACAGCAGCAGTAATACCGGGGGCGGG
GTGGGCAGAGCGAAGCAGTTTCAACAGCAACACATCGATGGGATTTATCT
TCGAGAGTGGGACGTCAATGGCGCCCCTCACTTCAAGAGACGAAGCAAGG
TGAGCTAGCTGCGTGAGAAAAGAGAGGGCTATGTATAGAGAGGAGGAGGA
GGAGTTTCCTCCCCCCTGGTTTATGGTTGTGCTTTCGCATACTGCGGTAT
GTACTGTTACACGTATTATGCGCTGCAGGATGTTTTTTTTTTTTTCTGAC
AACAGACATCATCGTGCAAGGATCGATGTACGTTTGATGTTGGTACTGCT
GTGACTGCTGTAGTTCAGTGATGCACACCGCGTATGCACACCGCGTAGGA
AGGTGTATCTTCTTCGGTCTTTCTTGGGTATTCCCTTGTAGTTTCTTTCT
GTTTTTTTTTATCTTCCTAGCGCTCAGCACTTTTTGTGACCACGGGCTAG
ATTTGGCGATGAGCTAATGTGAGAATCAACAACAACAACAACAACAACAA
CAACAACAGGATCGATGTACTCCGTATATCATATCATACCGTATCTACAG
GAGTTGACGTATCTCTGTACCGTAGACGACGATCTATAATACCACAAACA
TCGAAGACATTAAGGACCCTGTGTAGATTAAACTTCTTCGACGCTAGCAA
ACGGCCGGGTTTGCTTCTTGGTGTTGGTCGTCTGCCTTGCTGTAGTGCTG
TTGTATTGCGTGCCGCGTGAGAGCAGCACCGGCCCTATGACAGCAACTTT
AATTTTTGAAGCTTGCACGCACACAGGCGAGACAGCAGTCCAAAAAAGCA
GAAGGGCCCGACACTTTTTAATCGCTGATCCATACAAAACGTGCACATAT
CGAAACGCCAATCTCATTGCCAGATCGTTTGTTTGGAGCAGACGAAGACC
TTGTTTTCGATTTTCGGAAGGGTACAAAGAATGCCAGAAGAGGACGTTTC
GCGAAAAAACATAAACATGAAGAATGCCTTGCCGCCGAGGAGACAACACA
AAGATAATTATTTTCGTTTGTGAGCAATTTTTGCCAAATTTGATTGTGTT
GGGGGCAGATCAACGCAACAGGCTCTCGACATCCAGACTACTGTACCGTA
CTTGTACAAATCAACAGGGCAGGTTGAGCGCCAAAAGGCAGAAAATGAAC
AGATGTTTTATTCAATTAACAAATGTTATTCTCGAAAGCTGTTCAATTTA
GCCAGGTTTTGCCAGAAGTAACGACTGCTGTCTCAGTGTCTGACTGCAAG
GGGCTTCACTGGTCCACCCTACCTTGGAGTGGATTGCAGTCTGACAGCTA
AGGCTGTCTCTTGAGCGATTTGACAGGACTCATAACCTTTCTTCAATTCA
TGACCACCAATACCAACACCAACACCACAACAACAACAGCAGCAGCAGCA
GCAGCAGCAGCAGCTACGGTACTCTTGGTCGGAATTGCTGCGGAGTCGGG
CGTCGAATACCAACACCAAGCCTTGTGTTTTTGAAGTTCCACGTGAAAAA
AAAAAAGTACTCACGTGCGATCGAAACAAGTCGAAGCCCGCCGCACCTGC
CGTGGTACGGACGTTCAGCAGGACGTCTGCAAGGTAAAAGCAGCTTGCTA
ACACACACCCTCCGTTACGTCTGAGGTTTGTGGAGTATTTATATCGGGGG
TGGGGGCAGCGCCACATGCGTGTATTACGCCACACGCGTGTATTAATGAC
AATTTTAGGACCCACCGTTTGACACGTGAAACCAGCAAAGCAAGGTGTAA
GCAGTGAGCCTTGCAGCAACAGCGCAGCAGGATGATGCAGCTCGGATGAT
TAGGCCCTTTTCTCGGCACTCTATTGTAAGACCGTCTGATGTTCTGATGT
ATCCAAAACGCCAGCATATTCGGCTTCGTGTTGGGCCTCAGCGTCTCTTG
CCTCCTAATCTCTTTCGTCCTGCCTGGAAATTGTACGATGCTGTATCTTA
CTTATGGTTCCCGTTATTTGGCTTCTCTGTTGCACTTTTGTCCTCCCTCC
GTCCGCCTCTCCGTCTCTCTATATCTCATTACTTCTCGCTTTCCCTCTCT
CTCTTCCCCCCCCCCCCCCTCTCTCTCGTTCGCACGCAGCGAGGAAGCCG
CTCCTCCCCCGTGCACCTATTCTTCACGGGGAACGAGTGGATGCTACACC
TTGACGTCGACGCCAATCTTGACATAAACCACTGCCTCGCCTACTCGGAG
GTGAGAACCGTACCCGGTAAATATTCTTAGACAGACAGACAGACAGACAT
GTGCGCATATCATACGAAGTATCAATCAGGCAGTGCAAATATTGCACAGA
TTTTTGCGACATTGTTGTCCTCTAGTCCTCTGAAGGTTTCTGTAGGGTTA
CATACAGACTGTCATAAGATGCCGTATCCACTGCTGTGAAGAGCAGCAAG
CATCTTATACTCCGCGCATGTTGTTTCATGGTCGTGGTAGCCCTGTGGAC
TCTGTTCAATGGCAGCCACTTGCGTAGAAGGTCTACGAAGATCAGGAGGC
TCCGCGGTATGATACATACCGTATGTGTGATGATACACGGGGTTTTATAT
ATTTAGTCCCGTTTGTCACCCGCTTTTCTAGTAAATGAACCTCTGTGTGT
GTGACCACTCAAGCTTACCGCGAGCCCCTCAATGGGGATGAAATCCTGAT
GAGAAATGAATCAGCTGTCTGTCCTGGCAAGACGGGCTATAGCCCCGATA
ATGGCCGTGCGGCTTTTGCCTTGGCAAGCGCCCCTTTGCCGATTTCCTTT
TTGCGTTGGGTTAGGATGCACACGTCAGTAGTGCCTGATCCCCGTTCAGC
ACAGCAAATGCCGCACACACCTCGTACTTCCCCAGTCGAAACCAGTGGCT
GTTGCTCGACGGGGTCGATATCATCGGTGCCTTCTGGTGTACTAGTATGA
TATGCGCTTCGAACGTTGGTACTGTAGTCAGCGCTTCCTGCTTTGTCCGG
GTTGACCCGAAATCAGAACGATTGCGCTTCATCGGTGCCTTCTCTTGTAC
CAGTATGATTTGTGCCTCATACGTTAAAAATCACGTTCGGGTTAACTCGA
AACCAGAACGACTACGCTACTGCTGTACGTTTTTTCCTCACACCTTCCAC
TTCAGCTTAAATCACCGAGTTGACTTCGCTGTGCGATGGCGGCAACCGTC
ACTTTTGACAAAAACTACACCCAGGTGTCTGAGCTGAACCCTTTGAGAAC
AACTCGGAAGTGGGCCGTGCGCGTTGGGCAGGCGTGGGTGCGACGGCCAC
ACATGAGGCTCGCCGAAGCGTCTCCGGATGCACAGGTGAAGGGTCTGTCG
TAGTGGTCTACGGTGCGACATTTCGAGCGGATTATCATGTGCTATGATAT
GATATATGAAAGAAAACTAAAAAGCTGATCATTGTAGAGCACACTCGGTC
GCAAAACATCCCGAGTATAGTATGGTATGACCCTGCACTACTACTACAGT
AGACTCCTTCACAGGCCGCCGTAAACAGGGAGCAATAAAAGCTCTCAACT
TGTCTTCTGTTTTTTCGGGGGGGGGGGGTTTGTGCGACCACCCCCCCTAG
GTTTTGCCCGTTTTTGTAAGGACGTCACCCCCCCCCCTCCCTCCCTATCC
CCTCATCCCTTCCTTCTTCCCCTCGTGTATGAATTCCAAAAAGCAGGAAG
AAAGTCGAGGATCAACCGGGATAAACCGCTACGATGGGCACGGCAGCGGC
AACAGCGTCGTGGTGGATGGTGGACCGGGGACGGGCGAAGACGCGTCGTC
CCCGAGCCGACGACTGCTGCCCCTGTACGTGGTGTTCGTGCTGGATGCGG
TGGGGCTGGGGGTGGCGCTGCCGGTGCTGCCCTTTTTCGTGATGGGGCTC
AAGGCGACGGCGCTGCAGCTGGCCATCGTTGTTTCCTCTAACTACATCGC
CCAGACTTTCGGTGAGATGATCGAAAAAGTACCACAGCTAAAGAGTACCG
TTGGGTTTTGAAACTTCTGCTGTTCAACCGAAAGTGCAGATCATACAGCA
GTAAGGAGACACGGGCATGAGGCACCTGAGATAGATACAGCCGTGAGTAG
ACGTGCATTAGGCACTTGAAAAGTATCCGCACCTTGCCTTTAACCACGAA
CAATCACTGGTTAGCGCTCTTGCTTTCCTCTCCCCTTGCCATATGTTCCT
TCCACCATTTTTATTATCTTGACTTAAGGCTGCGTGATCACGGGAAATTT
GTCTGATGTCGTGGGCCGGAAGCCGGTGGTCATCGGCTGCCTGTTGGGCA
CCGTGATCTCCCACATCATGGTCGCCCGCTCTTCGACCCTGATGGGCGTC
GCGTTGGGAAGGGTGATTGGTGGTGTGACCGGGGGTCTGACTCCGATCGC
GCAGGCGGCTGTCGCAGACGTGGTGAGTTCAGTCACCCGGCTCTCGAGTA
TGATGACAGGATAGGCTATAGGCTAGGCAAGGATAGGGTAGGATAGGATG
GGATCGGAAAGGGTAGGATCGGAAAGGAAAGGAAAGGATAGGGTAGGATA
GGGTAGGGTAGCATAGGAGAGCATAGGAGAGCATAGCATAGCATAGCATA
GGATAGGGTAGGATAGGCTCTAGGATGATTGGTTTCTTGTTGTGCCTGGC
TTGTGTCCACGGGTTGGCTCCTAGTGATGAGCGAATGCGAAAATCATTAA
CAGTCTGCAATTGGTGGCTGTGGTGGTTGCACTCGTTGCACTGGTGCCAT
CGCCAGTGCCCGCTCGACTCATGCGGGTGTATATCCCATCATCTTCTTCA
ACACCCGCTAATAGAGAGGCATCTGCGGTGTATGTGTTAAAGAGCATCTG
CGGTTTGTTTGTGTATTGAGTGTTTTTTATTTGATTTTTATCAGTTGAAA
CGTTTGTAAATATTTTCGTTTTTGTTCCACTGATTGGACGGCCGTGGCTG
AGGCTAATTGATTTGCTCCGCTGCTCGGAGCCGAAGTATGGAAGACCGAC
ACAAGACGTGCGTGTGCGTGTTTGTGTGTGTACGTTCGTCCGATTTATTC
TGGCGCTTGTCCATACACCTTTCGGTAGATATCCTTGACGTTCAGCCGGG
GTCACACACACGGCGAACAGTAAACATAAGACACTCGCCCAAGCATCCAC
AAGTGCGCCCGCCCGAAGACCCTCGTAAGAAAGATAGATTCGTGCAGCGA
CACCCAACGAAAGTCGGCCTGACAATAAAATGCAATACTGTAAGTCAACG
CTCTCTCGCGTACATATCCCGCCGTTCGGCGAGTATTCGACACCAAAACG
TTACCGTCACGTGCATTTCCTGGGCTCTCTTGGCGAGTCTCTGCGCCCAA
CGTTTCCTCACCGCCCGCCCCCCCCTCCGTTTCCCACGCCCCCACGCCCC
CCCTTGCCAAAAACTCCTGGACAGGTTCCGGTGCAATCTCTTCCCAAGTT
TCTGGGTCAAATCCAGGCGTGCGTCGGGTTGGGTTTCGTGCTGGGGCCCA
TGACGATGACCATCCTGCACCGGCTCTTGAAGGTATCCACCGGCGACACG
TTCTACGCGGCTGCTCTGTTCCCCTTGGCGGGGCTCTTCTACGCCATGTT
CAAGATGGAGGAGACGAAGTCGGGAGAGACGGGCGTGTCCCAGCTGTGGA
AACGCCGCCCCGGAGCTTCCACGTCTCCGTCTTCGTCTTCGTCTTTGCCT
TCGTCGTCGAAGCTGTCCGCGGCCGCTGCTGCTGTCGAGGCCGAGCGCCG
TCGGGCCAAGGAAGGGAGGGACAGGGCTCTCGCGTCCTCGCGCAGGCGCA
GGAGACGACACGGCGAGGAGGTGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig620:90831..97056+

>mRNA_P-littoralis_Contig620.38.2 ID=mRNA_P-littoralis_Contig620.38.2|Name=mRNA_P-littoralis_Contig620.38.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1563bp|location=Sequence derived from alignment at P-littoralis_Contig620:90831..97056+ (Pylaiella littoralis U1_48)
ATGCACAAATTACTGTCTATTCCAGTGAGAAGCGTTGCATCATGCTTGCT
GACTCTGCTGGTGCACGGCACCATTCGAGCGGGAGAGGGAGCTCTCGACC
AAAACCCGGGGTTGTACTCGTTGTATTCACAACTGCAACCAATTCACCAA
CGTCAAGACCACGCTCAGAAGCGCTCAGCAGGAACAAGGGGCATCCTCGA
GACCCTCAGAGGGGGTGCGAACCCGAACAACCGTCGCCGCAAGCACTCCT
CTCGTGCTGTGGAACAGCAGCCGGGGCGCGGCAGTGGCAGCGACAGCAGC
AGCGGGGGGGCTTCGTCGCCTGAGGCTATAGAAATCTCCGGAGCGGAGCT
ATCTGACAGCAGCAGTAATACCGGGGGCGGGGTGGGCAGAGCGAAGCAGT
TTCAACAGCAACACATCGATGGGATTTATCTTCGAGAGTGGGACGTCAAT
GGCGCCCCTCACTTCAAGAGACGAAGCAAGCGAGGAAGCCGCTCCTCCCC
CGTGCACCTATTCTTCACGGGGAACGAGTGGATGCTACACCTTGACGTCG
ACGCCAATCTTGACATAAACCACTGCCTCGCCTACTCGGAGGTGTCTGAG
CTGAACCCTTTGAGAACAACTCGGAAGTGGGCCGTGCGCGTTGGGCAGGC
GTGGGTGCGACGGCCACACATGAGGCTCGCCGAAGCGTCTCCGGATGCAC
AGGAAGAAAGTCGAGGATCAACCGGGATAAACCGCTACGATGGGCACGGC
AGCGGCAACAGCGTCGTGGTGGATGGTGGACCGGGGACGGGCGAAGACGC
GTCGTCCCCGAGCCGACGACTGCTGCCCCTGTACGTGGTGTTCGTGCTGG
ATGCGGTGGGGCTGGGGGTGGCGCTGCCGGTGCTGCCCTTTTTCGTGATG
GGGCTCAAGGCGACGGCGCTGCAGCTGGCCATCGTTGTTTCCTCTAACTA
CATCGCCCAGACTTTCGGCTGCGTGATCACGGGAAATTTGTCTGATGTCG
TGGGCCGGAAGCCGGTGGTCATCGGCTGCCTGTTGGGCACCGTGATCTCC
CACATCATGGTCGCCCGCTCTTCGACCCTGATGGGCGTCGCGTTGGGAAG
GGTGATTGGTGGTGTGACCGGGGGTCTGACTCCGATCGCGCAGGCGGCTG
TCGCAGACGTGGTTCCGGTGCAATCTCTTCCCAAGTTTCTGGGTCAAATC
CAGGCGTGCGTCGGGTTGGGTTTCGTGCTGGGGCCCATGACGATGACCAT
CCTGCACCGGCTCTTGAAGGTATCCACCGGCGACACGTTCTACGCGGCTG
CTCTGTTCCCCTTGGCGGGGCTCTTCTACGCCATGTTCAAGATGGAGGAG
ACGAAGTCGGGAGAGACGGGCGTGTCCCAGCTGTGGAAACGCCGCCCCGG
AGCTTCCACGTCTCCGTCTTCGTCTTCGTCTTTGCCTTCGTCGTCGAAGC
TGTCCGCGGCCGCTGCTGCTGTCGAGGCCGAGCGCCGTCGGGCCAAGGAA
GGGAGGGACAGGGCTCTCGCGTCCTCGCGCAGGCGCAGGAGACGACACGG
CGAGGAGGTGGGG
back to top