mRNA_P-littoralis_Contig620.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.2.1
Unique NamemRNA_P-littoralis_Contig620.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig620.2.1 vs. uniprot
Match: D7FUM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM7_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.780e-51
Identity = 99/148 (66.89%), Postives = 124/148 (83.78%), Query Frame = 1 
Query:    1 MEVTHAKGTLYPALQLSSFRVRRDSLPPAFELPQEVDRAVTAPLPDLQCTTLAEEALRENQRLLKEDERERKETQAKIAREEALASEELTRIVEETERKKSRESAARARKVGELMSLMGITSASAAERQLEQCGWDYQKAAMAFFETV 444
            ME+TH+KGTLYPALQLSSFRVRRDSLPPAFELPQEV RAV  PLP L+ T++A EALRE++ LL+E+ERE++  + KIARE       LTRIVEETE++KS+E+AA+A+KV ++MSLMG++   AAE +LE+CGWDY+KAA AF ETV
Sbjct:    1 MEITHSKGTLYPALQLSSFRVRRDSLPPAFELPQEVARAVNEPLPALRSTSVAREALRESETLLRENEREQRAAEEKIAREXXXXXXXLTRIVEETEQRKSKENAAKAKKVRDMMSLMGVSDRYAAEVRLERCGWDYEKAATAFLETV 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM7_ECTSI2.780e-5166.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:19747..23995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1631
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002120.1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.158919-UTR-P-littoralis_Contig620:19746..209301680791296.158919-UTR-P-littoralis_Contig620:19746..20930Pylaiella littoralis U1_48UTRP-littoralis_Contig620 19747..20930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.1720886-CDS-P-littoralis_Contig620:20930..210861680791296.1720886-CDS-P-littoralis_Contig620:20930..21086Pylaiella littoralis U1_48CDSP-littoralis_Contig620 20931..21086 -
1680791296.1853588-CDS-P-littoralis_Contig620:21509..216351680791296.1853588-CDS-P-littoralis_Contig620:21509..21635Pylaiella littoralis U1_48CDSP-littoralis_Contig620 21510..21635 -
1680791296.199255-CDS-P-littoralis_Contig620:22256..223611680791296.199255-CDS-P-littoralis_Contig620:22256..22361Pylaiella littoralis U1_48CDSP-littoralis_Contig620 22257..22361 -
1680791296.2114367-CDS-P-littoralis_Contig620:23935..239951680791296.2114367-CDS-P-littoralis_Contig620:23935..23995Pylaiella littoralis U1_48CDSP-littoralis_Contig620 23936..23995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.2.1prot_P-littoralis_Contig620.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 20931..23995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.2.1

>prot_P-littoralis_Contig620.2.1 ID=prot_P-littoralis_Contig620.2.1|Name=mRNA_P-littoralis_Contig620.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MEVTHAKGTLYPALQLSSFRVRRDSLPPAFELPQEVDRAVTAPLPDLQCT
TLAEEALRENQRLLKEDERERKETQAKIAREEALASEELTRIVEETERKK
SRESAARARKVGELMSLMGITSASAAERQLEQCGWDYQKAAMAFFETV*
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mRNA from alignment at P-littoralis_Contig620:19747..23995-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.2.1 ID=mRNA_P-littoralis_Contig620.2.1|Name=mRNA_P-littoralis_Contig620.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4249bp|location=Sequence derived from alignment at P-littoralis_Contig620:19747..23995- (Pylaiella littoralis U1_48)
ATGGAAGTCACTCACGCGAAGGGCACTTTATACCCGGCTCTTCAGCTGTC
TTCATTTCGGGTGAGCAGGACGGTCTAATTTTGTAACTTAACAAAAAGGA
AAGTGTCCCTCGTACAACCCCTGTTGAACTGCCTGTGTACTTACAGCACT
CTCCCAGCATCTTTCCGGCGTACTTCTCGGACGACGAAGACAAAAGTGAC
TTTACACGGCTTAGTGTCAACCACCTCTTCACTTACAGCATGTGTCCGAA
CCATGAAACACGCTGGGAGAACTCTACTGCTGCTGTTGGGGGAACGCTCG
GGCGCTCTTTTTCACAGGGGCGACCACAAATCTGAAGCGAACGTGTCTCT
GCTTGTTACCCCGAGCCTCTCTCCTTGAAAACTTATGACTACGAGTACAG
CAGTCCAGTACGAGTAAAAATGGCTGTCCCATTCGTAGCTACTGCTGTGG
CGAGCCTGCTGCTGCGCACACACACCGACGGGTTTGTGCTGGCTGGTACT
TGTGTACAGAGTGCACAGCATGCTATCTGGGCGGTCAGAACAGACGTGAG
AGACAACGAGCTGGAGACGACACCCACGAACACACACACACACACACACA
CACACACACACATAGCGGTGTTGCTGTCGTCTCCCTCCTCCGCCACCCCC
TCCCGTACTCTTCACGGGCATGCAAGATTAAGATTCGTTGTATATACATT
TCGTAGGAATAATCTTGATGTCATTGTCTTGATTTTATCATTTTATCCCC
CCCCTCTCGGACTTAATATTAGTAAGCAGCTCTAAATCTCCACAAATCTC
CACCAGATATCATAAGGGTGCCAACGCCGTACAGGGCAGCGTTGCGTTTG
TGCTGGACGAAGGAATCCCGTCGGGAGGTTTCCAAAATCACGCCGTTTGG
TACCGGTACCCGATGACGTTCGTGATGTTACTATCAAGGGGGCTTTAGAG
TCGGTCAGAGGGGGGGGGGAATAGCGGAAAATACGGGAGTATCATGGTCT
CCCTCCCTCGCCTTTACGGAAAAAGGAATCCGAGCCACACACCACGCAAC
ACACCCGATGTGCCTTCCTGCCGTTACGCACCACACGCACATCAAGCGTG
AGCACCAACGATGCATTATTGATGTCGAAAGCTAGAGCAGAGAATGCCTC
TTCCCCTCTATCGGATCAGCTTTTTCAGAGGTACGTACACCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGTTATTTCGTCGTTTCGTTGGCGTCGGGTGT
CACCAGGCCAGGAGACATCGTAGCACTCACTGCCCTTTGGCCTGAAAGAG
GAAACTCCCTAACTTTGTTCACTTCGTGTACAATATTGGTGTGTGATCCC
GGATCGGGGCAACGCTCGAGAAATGTTGGCAATACCGCCGAAGGTTGAAG
GTACGCAAGCCACTTGTGGGCGAAGGCGAAATCATTGGAATTAATACGAA
AGCTCAAGAAGTACAGCTGCAACTGCGAGTTGAGGGCTACGGAGGAGGCT
TATCCTCTTCTCCGACGAAACCCCCAGACTCGCTTCTGCTCTGTCATCGC
GTTGCGCATCGTAAAAACCACGACTGCCACGGCTGCCGTCGTAACTGTAT
CTACTCTTGCTTCTTCTGTCCTCGTGTACGGCAGGTTAGGAGGGACAGTT
TACCCCCCGCGTTCGAGCTTCCGCAAGAAGTGGACCGTGCGGTGACCGCG
CCTCTGCCGGATCTGCAGTGCACGACGCTCGCTGAGGAGGTGTGTGGGAG
GAAGCGCGTGTATCCGCGGAACGGCGAAGAGTCGTGGGTAGTAGAGCCCT
CTATCTGTGTAGATGAGTTTGGTTTGTTTTCATGCACTCTACGACACATG
GACATTTTTCTTCCACCTTGTCGGGTGACGAAGAGTTTTTTCTTGCGGGC
TCTGGCTCGTAATGTACGGGAACTGCCGTTGTGTACACAGCGGTGTAGTC
GGAAGTGGCGCGCAGAAATGTACCTGGCAGTACGTTTTGGCATCATTTGG
TATGCACGTTCAAAAGTACCTACCCCCCGTGTTCCCTCGTTACACTCCTC
ACACGCCACGTGTCCCCCCTTTTACTCTCCGGTCTCTGTCGGCCTCCTCG
TGTCTGTTTGCCTTCTTTTTTGTCTCTATGACGTTCGAGCTTCTGCTTCA
TTCTCTGCTTCTCGCCTTCCTCAATGCTCTTTCCCCCTTCGATCTGAATC
TCGCACTCCTTCCTTGGTATCTCTGTATTTTTTGCCCCTCGGAAAACTGC
TCATTATTGCCTCTCGGTCTCGGCTTCTGTGCTGCTTGTCGCTCAGCCCC
CCCCCCCCCCCCCGGACGCTTGTGTTTCCTGTGTGCCGGGTATCTACTAC
TTTTGTACAGGCTTTGCGTGAAAATCAGAGGCTGCTGAAGGAGGATGAAA
GGGAGCGAAAGGAGACCCAGGCAAAAATCGCCAGAGAAGAGGCGTTGGCC
TCCGAGGAACTCACCCGTATCGTAGAGGAGACGGAGGTATGTCGTATATG
CGTGTGCGTGGTCGTTGGTGTTGGTTTCGTTGTTAGTGTTTGGCGTATAG
TTTCAACGAGGATCCCTTAAAGTACGAACGGCCCCCCACCCGTACATACT
TGTACCTGTTTACCTCAAACCGAACGAAAATCAGGCCTTGACATTTGTTC
ATTCCATTTTTGGTGAAAATCGCAAAAATATCAACAAACTATCAAATCGC
TCAGGATGTGTGATACAGCAATACGCTTGTTTTGCCCCCCCGTAGTTGGA
TTGAAATTCAGCGTCGGCTGCACAGGAAAATTTGTGTGTGTCAGTTTCCA
GCATGCCCCGTATCCTCGCGTTCTCGGTGCTCACGGAGAGCGTCGATACC
GACCGCATGCCCCGCGTTTCCTCCCCCCAAACCTCCCTCGACCATGTACT
TTTTGCCAGAGAAAAAAGTCAAGGGAAAGCGCGGCAAGGGCTAGAAAGGT
CGGAGAGTTGATGTCCCTCATGGGGATCACCAGTGCGTCGGCTGCAGAGC
GGCAGTTAGAGCAGTGCGGATGGGACTACCAAAAGGCGGCCATGGCCTTC
TTTGAGACCGTCTGATTTTAGTCCTTTCTGATGGCCTTTGTCTTGGCAAT
TGAGGGGTGGGCTAGACTGATTTCGAGAGGCACAGGGGGATAATACACCC
CACCTTGTTGTTGCTTTCGTTCTGGACGTCATAAGACTGGTGGCCACGCA
TCCAACGTTTTTGAAGGGTAGGCCGGGGAGCAACATTCCTTTTGTCTGCT
CGAGTTGTATGCTTCCCGCATTGTTGGCAGCTTATATACTTCGAAGTAAA
AGTAGCAGACCAGCTTGAGCAAGGGCCGCTTGGCCTACCTCTCATATACC
AGGTATACCCCGATAACGCTGTTGTTTGTCGAGGCACATTCGCGCCCTAC
AGGGACGGGCCATATTTCTGTGTCGCCGGTGTTCGTTACATGTATCTAAA
AATTTGTGATCACGCGAGCGTGTGTTGCGCGTCACATTCGGGAGGAAGGG
GCAGGCAGAAAAGATACCAAGCTGCGCGATGTGCGGCGGTTTTCTCGAGA
AAGCGGCGGCTTTCGCGATAGACCACACGTGCGGTGTATATACGGAGGTT
ATGGTGTAATGGGTGTCGGCTTGCCTTGTGTGGACCGTTAGGAAAATTTG
TGTGCTGGTACCATCTTTTGTGGTCAATATGTAGTGCAGGCGTCCATGTG
GTATGTCTATGATGTAGAATATGTGTGTAAAGGCAGCGCCGAACGAAGGG
TTGGTCGGTTGATCGACACGAGCCTGGTCTTTCAGGCCGCTGTTTGTTCG
CGGCAGCGTACCTTGAGTTGCCAACGTGGTCGACTGTTGACCATTTGTGC
TCGCAGTGCCCACGTGGTCACAGTTCGGATTCTGTGCTTTCCTTGTTGCT
ATTTCTCTAGAAGGCAATGTGTGCACCCGGAAGATTTTTCAGGATTTTTC
GTTCGGGAGTTGTTGTGATGGCAGCACCCTTCTACGACGAAGACGATTCA
GTCATATTGCCATCGTGTGTTGCGCGGATTCTGAGAGAAACGCAAACACT
ACGAGGAGAGAAGTGCTTCAGCCTCGGTTGAGATCAAAACACTGCTGTTT
GTTGTTGTGCGACACGTGCGTTGTTGATGTGATGTAAAGTACCAGGCTAT
TTTTCGAGCTGATCACATCCATCTGTAGTTTTCTGCATAATTCCTTTCCG
CAGGTGGATCGAGGTGGGAGAAGAAAACAAACTCAGAGCCTTTACGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig620:19747..23995-

>mRNA_P-littoralis_Contig620.2.1 ID=mRNA_P-littoralis_Contig620.2.1|Name=mRNA_P-littoralis_Contig620.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig620:19747..23995- (Pylaiella littoralis U1_48)
ATGGAAGTCACTCACGCGAAGGGCACTTTATACCCGGCTCTTCAGCTGTC
TTCATTTCGGGTTAGGAGGGACAGTTTACCCCCCGCGTTCGAGCTTCCGC
AAGAAGTGGACCGTGCGGTGACCGCGCCTCTGCCGGATCTGCAGTGCACG
ACGCTCGCTGAGGAGGCTTTGCGTGAAAATCAGAGGCTGCTGAAGGAGGA
TGAAAGGGAGCGAAAGGAGACCCAGGCAAAAATCGCCAGAGAAGAGGCGT
TGGCCTCCGAGGAACTCACCCGTATCGTAGAGGAGACGGAGAGAAAAAAG
TCAAGGGAAAGCGCGGCAAGGGCTAGAAAGGTCGGAGAGTTGATGTCCCT
CATGGGGATCACCAGTGCGTCGGCTGCAGAGCGGCAGTTAGAGCAGTGCG
GATGGGACTACCAAAAGGCGGCCATGGCCTTCTTTGAGACCGTCTGA
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