mRNA_P-littoralis_Contig620.5.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.5.3
Unique NamemRNA_P-littoralis_Contig620.5.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.5.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:35414..40104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size644
Hectar predicted targeting categoryother localisation
Exons3
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.9378428-UTR-P-littoralis_Contig620:35413..354541680791295.9378428-UTR-P-littoralis_Contig620:35413..35454Pylaiella littoralis U1_48UTRP-littoralis_Contig620 35414..35454 -
1680791295.9505694-UTR-P-littoralis_Contig620:35838..360581680791295.9505694-UTR-P-littoralis_Contig620:35838..36058Pylaiella littoralis U1_48UTRP-littoralis_Contig620 35839..36058 -
1680791295.9609306-UTR-P-littoralis_Contig620:39723..397381680791295.9609306-UTR-P-littoralis_Contig620:39723..39738Pylaiella littoralis U1_48UTRP-littoralis_Contig620 39724..39738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.972049-CDS-P-littoralis_Contig620:39738..401041680791295.972049-CDS-P-littoralis_Contig620:39738..40104Pylaiella littoralis U1_48CDSP-littoralis_Contig620 39739..40104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.5.3prot_P-littoralis_Contig620.5.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 39739..40104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.5.3

>prot_P-littoralis_Contig620.5.3 ID=prot_P-littoralis_Contig620.5.3|Name=mRNA_P-littoralis_Contig620.5.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
RWSDVNEQERVWKGCGQRVFVLETFCFQASRLSVCRWGCSGLGLGNLELV
CLPRERWWIVDGFCCQRVTASQGEGSIDRGRFDPNGVAASGGSSSLTLAL
NPQAGGCTARSVGNRGTDFIM*
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mRNA from alignment at P-littoralis_Contig620:35414..40104-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.5.3 ID=mRNA_P-littoralis_Contig620.5.3|Name=mRNA_P-littoralis_Contig620.5.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4691bp|location=Sequence derived from alignment at P-littoralis_Contig620:35414..40104- (Pylaiella littoralis U1_48)
CGTTGGTCCGACGTAAACGAGCAAGAGCGAGTGTGGAAAGGCTGTGGCCA
AAGAGTATTTGTTCTGGAGACCTTCTGCTTTCAGGCCTCTCGTCTTTCGG
TCTGTCGGTGGGGTTGCTCTGGACTTGGTCTCGGTAATCTGGAATTGGTT
TGCCTTCCACGGGAACGGTGGTGGATCGTGGATGGTTTTTGCTGCCAACG
AGTCACGGCATCTCAAGGGGAAGGATCGATCGACCGCGGCAGATTTGATC
CCAACGGTGTTGCTGCTTCGGGAGGCAGCTCTTCATTGACCCTAGCGCTC
AACCCGCAGGCGGGGGGGTGCACAGCCCGGTCGGTAGGGAATAGGGGGAC
GGACTTCATCATGTGATGGGGCCAACCTCGGGTGCGGCTGGTGCAACAAC
GCGCGGGGCGGGTGTAGCTTGAATAATGAAAGGAGGTGGCGGTTGACGCT
TTGGCTGATGGGGGAGTCGCGTGCCCACGTGCCTACAGCTCTAGAGCGGT
GTCATCGTTGATCCCAGGTACGCGGTTGCAATTTGGGTGGGCACATTCTC
CACCTCATGAGGTTGGGCGGGTTTGTGTTTGGGTTCGGTCACGTCGTTTT
CCGTTTCCCCTTCGTGGCGATTTGTCCGCCGGTTCAACCACTCGTGAATA
CACGCCGGTGTCGCTGTACTCGCTTGTGTGGAGGTTGCCTGTGAGGGTCG
GTGTTGGCTTCACGCCCTATCGCAGAGGCTGCCGATTGCCTTTGCCGTGT
GGCAGGAGTTTGCCTGTGAGTGTCGGTGTTGACTTCACGTCCTATTGAGG
AGGCTGCCGATTGCCTTTGCCGTGTGGCAGGGGCAGGGTCTGCCCTGCTT
CGGCATTGTGAGGGGCGTGCTGATGATGCATTGGTACATGCTCACTCATC
TTGTGCCCCTCTCGTTTGGCGCCCCATGGTGATGTTTCGCGTGTACGATG
TCACCTTCTTACAGCACGAGTATATACTGAAAACTTCTGTGTACATATGA
TATGAATACAGTAGCAGTATCGGTTTGTGGGTTGCGCCACAGGGTGGTGA
TGTGTCGCGCGTGCGATGTCACTTTGGTGGTACTGCTGTACAGCAGTATT
GTGAAATGTTTCTTGTGCGCTCTGGTGTGAACACATTTCGGTGGTGTGAT
TTTTTTTTTTTTTTCTGGAAATCGTCGTAATGTCTCACGGGTGCGAGCAC
ATTTTTTTAAGGAAAACTCCTGAACATCACAAAGAAAGCACATCCACCCC
AGACAAGACTCCGTGGGATGCGTTGAGTTCTCTACACGTCGGGAATAAAA
ACAACTTACAGCAGTAGAGGATCTGGAAAACTGCAGCACTCCCCGAGCAT
AACTCGTTCTTTGTTTGTGTTGGAAAAAAAAAAAAAATAAGAGAAAACAA
AAGGTTTGCTCACAATCGGGTGGTTTGAAAAAGTCTCCGGAAATCATGGA
AAGAGGTCCCCCATAAGTTGGATGTATACTTCGACTGCTGTTGCAGCCGG
GAGCGCCTGTGAAATCGCCCTTGGGTGGGTTCTCGGGGCGAAGGTCGCGT
CTTATGGACAATACAAGGAACGTTCCTAGAACGTTTGCACACACAGCAGT
TATCACAGAGAAAACTACCCCCGACGTGGGCTTGGGACGTGCGTCGAAGT
TTGACGCACGCTTCGTGCGGGAAATTTTGGGCTTGTGCATCGCCTATCGG
CATGGTTTCGTGGACGAGCCCCATATTTGGTATTTCCCTAGCACGTTTGT
ACACACAGCAGTATTGTGACAGTGAAACTAGTCTCTGGCGTGATCGTGGG
GCGTGCGTTGGTGTTTGACGCTTGTTTCATTCGGGAAATTTGGGCTTCGT
GTATCATCTGTGCGGTGTCGTGGAAGAGCCCAAATTTCATCAACTGTGAC
ATTGTTGGCAAGTTTGGAACCACAGCAGTTGTAGTAGTAGTTGAGAACAC
ATAATCCCCAACGTGATCTTAGGTGTGCGTCGGTGTGTGAAACACGATTG
ATTCATGCGGGGACTTTGGGTTTGAGGGTATCGACTTTCGGCGTTGTGAA
CAAGCTCAAAATTTGATTTGTTCACGACTTGAAGTTCGCCGCGCGTGCGT
GCGTGCGCATACACTAGGCAAATTTCGGGCGTGCGGGGTATGGCCTCTCG
GCGTCGTGGAAAGTCCGAATTTCGTAGTGGGAGGTATTTGTACAACAGCG
CGTTCACAGCAGTAGCGGCAGTCATCACGGAGCATGTTATCTTCGATGTG
ATCTTATCGTGTGCGTTGGTGTTTGATGCACGTCTCATTCGGGAAATTTG
GGTTTGTGTGTATCGCTTGTCGGCGTCGTGGAAGAGCCCAAATTTTGTTT
TCTGCACGATTTTCGATTTAATGGTTGCTGCTGCCGCGCGTGTGCCTACA
TTCGGAAATTGAGGCTTGCGTGTATCGCCTCTCGGAGTCGTGTTAAAGCC
CATATTTCGTAGATACAGTGCTTGGCATGTTTGCTCACACAGACAGCAGT
ACTAAGCTGTATCCATATCCATACAGCGGTACAGGTTCTCGTCATCTAAA
TGTATCATTTATATGGCGTATGCACAACGGCGGGTAGGGCGGGGCGCAAA
CACAACACGGCGGGGCGCAGTTAAAAATACACTCACCATATTCCAGAATT
CAGGAACGGCGCGGACATTGGTGAGAATAATGAATAAATCAACGAGTATT
ATATAGGATTGGAGTCGGCCCTCACCAGGGCATTTTATTTCATATTTTCG
GTGCCGTGTGGATGTTACGGACGGATTCGGCAGGTGACCGAGGCAGTTGT
CTGGGTGGCGTTCAATCCCGGGTTTCTGGCCCTTGGTGTTCGTATACGCT
TGCATGTCAACACACGCGTATTTGGTTTCTGGACCGCTACCGGGACAAAG
GTTGAGGTGGCAGCCGTTGCGCATGGTCAATTTATGGCGCCGCAGAGGTG
TGGTACTATGCGGACCATGGGGTGGTCGTCGACGAATTCGCTGGTTCCCA
TATTTGTGCGGGATTATTTGGACGACGAGTGTTTGTCGAGGGACGGTTTA
ATGATCGGCGCCGGTGTTTGCGGGCAGTGCATTTCCTTGCCACTGATTAT
TTCCGTTGGTTGGGTGATCACGGATTATTAAATCCTCCGAAGAGATCGCT
GAGGGTTCGGGGTTCGTCCTGGAAGCACAGGAGCCCACAATTTTCATGAC
CGAAGGCAAACAGCACAATCTAGCTCGAGTGTTACAGCAGTGGCCGACGT
GTCAAACCTGCCACGGCTCGACAGATGTCTGAGTCGACTGTTTTCCCAAT
GCATGTTTCATCCTTTCTGCGCCCGGGCAAATTCTTTGTGAGACGTTAGC
GGGTGACGGTGAGTATGCCGATGTCGGCTTAGCTCACGTTAGAGGTTTCC
GATCCAGCCCAGCGCGTGATCCTCGGCCCGATGGTTTACGACGACCTCTA
TGTGGCGATGGTTGGTACAGCACGGTTCCAGCTTGGGGGGGGCACCTCAC
ATTCCCACGTGCCAGGTACTAAATTCAAACCCCAATGTAGCATATTGTCG
TGCGCGCCCTCGTCGGGCATTCTTGTCCACGTCGTATATTATCAGCCACT
TGTTTCAGGTTGTCGTGCGCCTGCCTCCTAGTTTTGCCGTGTTCAGATGG
GTCCAGGTGAGCCGGTGGTGGTTTCTGTCGTTGTGTGCAGGCCGGCCGTT
GTCTCCGATACAATAATATGCGGGAGAACTGTTACATTTGTGTGGCGCGA
GCACATTTAGTATCAATGTATTTCAACGGCCAACTGGTACGGCTCGGTTG
TAGGTGTCGGCAAGAGCACCGGCCAGTCATGGCGGGTGACTACGCCCCTG
CGACGACGACGCTAGTGTTCTATGGACCTAGCGCTGTCGGTGTTGATGCG
CACGTATTGAAATGTTTGGTGCATGGCATTTCGAGGCATCGCTTGTGTCC
GGTGTGGTACCACTCCATAGTTGACAATAAATCTCGCTGGATGTTTCCTT
CCTTATGTGGTAACCTTGGCGCTGCTTTCCCCATACACAAAGACAGGAGG
TCCACCTGGGCCGGGTCGGGGAGCCGTTTTTCGTGGTGCTGGCCTCCAGC
TCAACGGGCTGCAGTTGCGCCGTCGTCTGAGATAAATTACTTGGGCCTTT
TTCCTGAGCCTGGGTGGAATGTCGTGTGGGCGTGGAGAAGCTGGGCGGTA
CCGTGGTGGGCTCCAGCCTGTCCGCGCAGCTAATGCGCCGTCTTTTGGAA
CTATCTTATCTGGACGGTGTGTCCAGCCTGATGGAATTTTGTGTGGGCGT
GGTGCGGTTGCCTGTATTTCTCGTCGATGTGGCGGATTCGACCAATTTTG
CAGCCCAGTTTTTGTCTTGTGTTGCGCATGAGTTTACTCCCGGGGTCTGC
AGCACGAGTACCGGTATCGGCTGCCGCTTGTACGCCGTCAAATCCTTTCA
TCGTTTGGTTCGTGCTGCCGTTTAGTGGTCGAAGGGCGACAAGGTTGTGA
CTCGTGTGCGCCGTGGCCCGCCTTGCTTCGTGCAGGACGGCGGGGGGGGC
AGGAAATTTCATGATCGGACTCGTTCTGGTTATCCATTACTTCTTCGTGT
ATGCTCTCTAATTTGTGTGTGTCCTTGTTTCATGTGTGTGTGCGAGTCAG
GCTGGATGTAGCTCGTTGGTTCCGGAAGTCGTGGTGTGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig620:35414..40104-

>mRNA_P-littoralis_Contig620.5.3 ID=mRNA_P-littoralis_Contig620.5.3|Name=mRNA_P-littoralis_Contig620.5.3|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig620:35414..40104- (Pylaiella littoralis U1_48)
CGTTGGTCCGACGTAAACGAGCAAGAGCGAGTGTGGAAAGGCTGTGGCCA
AAGAGTATTTGTTCTGGAGACCTTCTGCTTTCAGGCCTCTCGTCTTTCGG
TCTGTCGGTGGGGTTGCTCTGGACTTGGTCTCGGTAATCTGGAATTGGTT
TGCCTTCCACGGGAACGGTGGTGGATCGTGGATGGTTTTTGCTGCCAACG
AGTCACGGCATCTCAAGGGGAAGGATCGATCGACCGCGGCAGATTTGATC
CCAACGGTGTTGCTGCTTCGGGAGGCAGCTCTTCATTGACCCTAGCGCTC
AACCCGCAGGCGGGGGGGTGCACAGCCCGGTCGGTAGGGAATAGGGGGAC
GGACTTCATCATGTGA
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