mRNA_P-littoralis_Contig116.109.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.109.1
Unique NamemRNA_P-littoralis_Contig116.109.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 7.530e-31
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 3 
Query:  612 CMTWAPRADHYALLRTTHHRLLLRVIGYRSVQSTYQQLSYAKALEKTVSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLGG 869
            CMTW+PR +HY +L+TTHHRLLLRVIGYR  + TY+QLSYA+AL++   Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+L G
Sbjct:  119 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 204
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.250e-30
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 3 
Query:  612 CMTWAPRADHYALLRTTHHRLLLRVIGYRSVQSTYQQLSYAKALEKTVSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLGG 869
            CMTW+PR +HY +L+TTHHRLLLRVIGYR  + TY+QLSYA+AL++   Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+L G
Sbjct:  170 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 255
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.580e-30
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 3 
Query:  612 CMTWAPRADHYALLRTTHHRLLLRVIGYRSVQSTYQQLSYAKALEKTVSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLGG 869
            CMTW+PR +HY +L+TTHHRLLLRVIGYR  + TY+QLSYA+AL++   Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+L G
Sbjct:  138 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 223
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.210e-29
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 3 
Query:  612 CMTWAPRADHYALLRTTHHRLLLRVIGYRSVQSTYQQLSYAKALEKTVSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLGG 869
            CMTW+PR DHY LL+TTHHRLLLRVIGYR    TY+QLSYA+AL++   Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+L G
Sbjct:  260 CMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 345
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.020e-29
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 2 
Query:  365 PPSKLSIVAASQKYAQVTEFRYLGGLATADGNLTHEINRRSRAAWGCLKKFSRELFDRQSAPWRLKVRLLKAEAMEALLYGCM 613
            PP  L+I AA QKYAQ TEFRYLGGL    G+LT EIN RSR AW CL+++ RELFDR  AP+RLK+RLL+AEAMEALLYGCM
Sbjct:   59 PPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCM 141
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.820e-29
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 3 
Query:  615 MTWAPRADHYALLRTTHHRLLLRVIGYRSVQSTYQQLSYAKALEKTVSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLGG 869
            MTW+PR DHY LL+TTHHRL LRVIGYR  + TY+QLSYA+AL++   Q VEA +RQR LLFAGA+ARQ DGRLPKRLMFG+L G
Sbjct:    1 MTWSPRRDHYRLLQTTHHRLPLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVG 85
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.590e-29
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 2 
Query:  365 PPSKLSIVAASQKYAQVTEFRYLGGLATADGNLTHEINRRSRAAWGCLKKFSRELFDRQSAPWRLKVRLLKAEAMEALLYGCM 613
            PP  L+I AA QKYAQ TEFRYLGGL    G+LT EIN RSR AW CL+++ RELFDR  AP+RLK+RLL+AEAMEALLYGCM
Sbjct:   59 PPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCM 141
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 8.000e-29
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 2 
Query:  365 PPSKLSIVAASQKYAQVTEFRYLGGLATADGNLTHEINRRSRAAWGCLKKFSRELFDRQSAPWRLKVRLLKAEAMEALLYGCM 613
            PP  L+I AA QKYAQ TEFRYLGGL    G+LT EIN RSR AW CL+++ RELFDR  AP+RLK+RLL+AEAMEALLYGCM
Sbjct:   59 PPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCM 141
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.160e-28
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 3 
Query:  612 CMTWAPRADHYALLRTTHHRLLLRVIGYRSVQSTYQQLSYAKALEKTVSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLGG 869
            CMTW+PR +HY +L+TTHHRLLLRVIGYR  + TY+QLSYA+AL++   Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+L G
Sbjct:  421 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 506
[Close]
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.660e-28
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 3 
Query:  612 CMTWAPRADHYALLRTTHHRLLLRVIGYRSVQSTYQQLSYAKALEKTVSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLGG 869
            CMTW+PR +HY +L+TTHHRLLLRVIGYR  + TY+QLSYA+AL++   Q VEA +RQRRLLFAGA+ARQ DGRLPKRLMFG+L G
Sbjct:  533 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 618
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLH5_9PHAE7.530e-3172.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE2.250e-3072.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE4.580e-3072.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLC4_9PHAE1.210e-2974.42Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K038_9PHAE2.020e-2971.08Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KF72_9PHAE4.820e-2971.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ16_9PHAE6.590e-2971.08Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JAH7_9PHAE8.000e-2971.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE1.160e-2872.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ91_9PHAE1.660e-2872.09Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:392695..394038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1344
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789481.3359206-UTR-P-littoralis_Contig116:392694..3932961680789481.3359206-UTR-P-littoralis_Contig116:392694..393296Pylaiella littoralis U1_48UTRP-littoralis_Contig116 392695..393296 +
1680789481.358369-UTR-P-littoralis_Contig116:393773..3940381680789481.358369-UTR-P-littoralis_Contig116:393773..394038Pylaiella littoralis U1_48UTRP-littoralis_Contig116 393774..394038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789481.3479202-CDS-P-littoralis_Contig116:393296..3937731680789481.3479202-CDS-P-littoralis_Contig116:393296..393773Pylaiella littoralis U1_48CDSP-littoralis_Contig116 393297..393773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.109.1prot_P-littoralis_Contig116.109.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 393297..393773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.109.1

>prot_P-littoralis_Contig116.109.1 ID=prot_P-littoralis_Contig116.109.1|Name=mRNA_P-littoralis_Contig116.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MGVCMTWAPRADHYALLRTTHHRLLLRVIGYRSVQSTYQQLSYAKALEKT
VSQCVEAIIRQRRLLFAGALARQDDGRLPKRLMFGKLGGGGSRKRAGKRT
ERELSTTSNKKTEEEEEEGEGEARGSKRRKTRKDETTAAEESKRELMERV
AWHMHQID*
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mRNA from alignment at P-littoralis_Contig116:392695..394038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.109.1 ID=mRNA_P-littoralis_Contig116.109.1|Name=mRNA_P-littoralis_Contig116.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1344bp|location=Sequence derived from alignment at P-littoralis_Contig116:392695..394038+ (Pylaiella littoralis U1_48)
TTTGGAAAAGCTGTAATGTGTGAAAGTTTGTAGCGGTCAAGAAGTAGCAC
ATGTGTAACGGTTGTTCTAGGGACACTCAGCCATCAAGTGTATTATTGTT
TTGAAGTATGAAAATGGTATTTACGTTTACTGTTGTGAATGTTTCTTGTG
CACGCTATGTACGATACATCGTGGCTGTGTGTGACCGGCTGTGGCCGGGC
TGACTGTGTTTATTTTTTGATTTGTGGTGGGGTGGTGATGATTTGTGTGT
TTTCGTCTCACTTTTTCTTTGGGCATCAGTCTGCACCTTTTGGGGCATGA
AGTGGATGCACTACAGCCGGGGTCACAGAAGGAAGGTAACACGGAAATTT
TCTTTTTCCTTCACCCACCGTCCAAACTTTCCATCGTAGCAGCGAGTCAG
AAGTACGCACAAGTGACCGAGTTTCGGTATTTGGGCGGCCTTGCAACCGC
GGATGGAAACCTCACGCACGAGATCAACCGCCGAAGCCGAGCCGCGTGGG
GCTGCCTCAAGAAGTTCTCCCGTGAACTCTTCGACCGGCAGTCAGCACCG
TGGAGACTCAAGGTCCGACTACTGAAAGCTGAGGCGATGGAGGCGTTGCT
CTATGGGTGTATGTATGACCTGGGCACCACGCGCCGACCACTACGCGTTG
CTGCGGACAACGCATCACCGGCTCCTACTGCGAGTAATCGGATACCGCAG
CGTACAAAGCACCTACCAACAGCTGTCATACGCCAAAGCGCTCGAGAAGA
CCGTGAGCCAATGTGTTGAGGCGATCATCCGGCAAAGGCGACTTCTGTTC
GCGGGAGCCCTGGCAAGACAAGACGATGGGCGGCTCCCGAAGCGACTGAT
GTTTGGGAAACTCGGGGGGGGTGGAAGCAGGAAACGTGCAGGAAAGCGAA
CGGAGAGAGAACTCAGCACAACAAGCAATAAGAAAACCGAGGAGGAGGAG
GAGGAGGGGGAGGGAGAAGCTCGAGGAAGCAAGCGTAGAAAGACCCGAAA
GGATGAGACGACGGCGGCAGAGGAGAGCAAGAGGGAATTGATGGAAAGAG
TAGCATGGCATATGCACCAGATTGATTGACACTGCTGTGCTAGCACTAAC
CCTTCTCATCCGTTTCCCCACTGCATCAGTGCGCCCCCCCCTGTTTGTTG
AGTTACGATGGACTGAGCTACCGCGTCCTTCTAAGTTTTCTTTTCGTGTT
CTGTTTTTTTTCTGCCCTTCTGCCTTTTTGCCCCCTGCACGCCTGCGTAC
TTGCGCTGCCTGAAACTGTTACTGGGCCGGTGAAGAGAGTAGCACGCCCG
ATGTCCATTTTATCGACACCTTGGCAACTGAATTCGGTGTCTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:392695..394038+

>mRNA_P-littoralis_Contig116.109.1 ID=mRNA_P-littoralis_Contig116.109.1|Name=mRNA_P-littoralis_Contig116.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig116:392695..394038+ (Pylaiella littoralis U1_48)
ATGGGTGTATGTATGACCTGGGCACCACGCGCCGACCACTACGCGTTGCT
GCGGACAACGCATCACCGGCTCCTACTGCGAGTAATCGGATACCGCAGCG
TACAAAGCACCTACCAACAGCTGTCATACGCCAAAGCGCTCGAGAAGACC
GTGAGCCAATGTGTTGAGGCGATCATCCGGCAAAGGCGACTTCTGTTCGC
GGGAGCCCTGGCAAGACAAGACGATGGGCGGCTCCCGAAGCGACTGATGT
TTGGGAAACTCGGGGGGGGTGGAAGCAGGAAACGTGCAGGAAAGCGAACG
GAGAGAGAACTCAGCACAACAAGCAATAAGAAAACCGAGGAGGAGGAGGA
GGAGGGGGAGGGAGAAGCTCGAGGAAGCAAGCGTAGAAAGACCCGAAAGG
ATGAGACGACGGCGGCAGAGGAGAGCAAGAGGGAATTGATGGAAAGAGTA
GCATGGCATATGCACCAGATTGATTGA
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