mRNA_P-littoralis_Contig62.147.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.147.1
Unique NamemRNA_P-littoralis_Contig62.147.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig62.147.1 vs. uniprot
Match: A0A6H5JV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV53_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 3.100e-41
Identity = 172/464 (37.07%), Postives = 211/464 (45.47%), Query Frame = 1 
Query:   34 SKATDEGNCADRLPNKTARLFSR-LSSPRSGQQXXXXXXXXXWAAGQKVWDP--SPTSATTGYVTSSPAPDWRRLGLSSLGRTASFDEARQAVSKNGLNAEESAKPRRASAFVSHGSALPPVVTEVGRRVSALGPSTTQAPR-QAPHYSDLLSAKTPSRSITSFNGHPGYSPPTLVGIRDPKIEGEGKGAVSRGDLKSPTDPPGDMPRWSNEPTPGGNSRLHGAAXXXXXXXXXXGTPGSR-AACMFHLMPATAAYTAGQTLRSPRKTPT--TTAAPSAQGGAGSSRRWS---------VLGQAQSGPADNTGSDEGGATLVPAWGAPGKEGNGDEDDEGA---------RGSGNRPAATMVASVRGXXXXXXXXXXDARENVSSGR--ARGLIMAPPPLAGR---LGSQPRRPSVVGPPDQDRGNAGANGYVAAWGATDEEDPAEEPTSRRGTGPADGGVAGR 1335
            S A D  +   R PNKT+ LFS  +++      XXX       A  +KVW+P  SP S TTGYVTSSPA +WRR G+++LGR ASFDEAR    K+G+ +E+S+KPRRASAFV+HGSALPP V E+ RR SA    T      + PHYSDLLSA   SRS+T+FNG PGYSP  ++   D  IE E                 G          P G  R                 PGSR AA MFH+MPATA +       S  +TP+  TTA                        VL  A  GPA   G     AT   AWGAP  EG   +DD            RG G+RPA + + +V               E  +  R   RG +MA    AGR                          + +V AWGA   + P +EPT R     A+ GVAGR
Sbjct:  383 SVAADGASAQARTPNKTSSLFSGPVAAXXXXXXXXXQQQDGERATRRKVWNPHQSPPSITTGYVTSSPAMNWRRDGVATLGRVASFDEARMVAIKSGMQSEDSSKPRRASAFVAHGSALPPRVIEMHRRDSAYETRTVPGGAGREPHYSDLLSANASSRSVTAFNGCPGYSPSLMLAQPDAVIEEEAAAGXXXA---------GQSEDGVGAGAPSGGRRPP--------------VPGSRLAARMFHVMPATAVFAGNLPSYSRGETPSKATTAXXXXXXXXXXXXXXXXXXXXXXXXVLDPA--GPAAKEGGGAS-ATFAAAWGAPVDEGTEGKDDAAEAGKTSAAEDRGMGSRPAGSGIGNVV--------------EYQAPNRHPRRGSMMAQAAPAGRPXXXXXXXXXXXXXXXXXXXXXXXXXSAFVPAWGAPANDGPRQEPTGRS----AESGVAGR 802
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BLAST of mRNA_P-littoralis_Contig62.147.1 vs. uniprot
Match: D8LUB2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB2_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.990e-39
Identity = 150/361 (41.55%), Postives = 182/361 (50.42%), Query Frame = 1 
Query:   34 SKATDEGNCADRLPNKTARLFSRLSSPRSGQQXXXXXXXXXWAAGQKVWDP--SPTSATTGYVTSSPAPDWRRLGLSSLGRTASFDEARQAVSKNGLNAEESAKPRRASAFVSHGSALPPVVTEVGRRVSALGPSTTQAPR-QAPHYSDLLSAKTPSRSITSFNGHPGYSPPTLVGIRDPKIEGEG-KGAVSRGDLKSPTDPPGDMPRWSNEPTPGGNSRLHGAAXXXXXXXXXXGTPGSRAAC-MFHLMPATA-------AYTAGQTLRSPRKTPTTTAAPSAQGGAGSSRRWSVLGQAQSGPADNTGSDEGGATLVPAWGAPGKEGNGDEDDEGA---------RGSGNRPAATMVASV 1053
            S A D  +   R P KT  LFS  +       XXXXX     A  +KVW+P  SP S+TTGYVTSSPA +WRR G+++LGR ASFDEAR A  K+G+ +E+S+KPRRASAFV+HGSALPP V E+ RR SA    T  A   +  HYSDLLSA   SRS+T+FNG PGYSP   +   D  IE E   GA + G  +            +  P+ GG   +                PGSRAA  MFH+MPATA       +Y  G+T                          SVL  A  GP          ATLV AWGAP  EG  D+DD            RG G+R A + V +V
Sbjct:  357 SVAADGASAQARTPKKTTSLFSGPAXXXXXXXXXXXXDGER-ATRRKVWNPHQSPPSSTTGYVTSSPAMNWRRDGVATLGRAASFDEARLAERKSGMQSEDSSKPRRASAFVTHGSALPPRVIEMHRRDSAYETRTVPAGAGRVAHYSDLLSANASSRSVTAFNGRPGYSPSLTLAHPDAVIEEEAVAGAAAAGQREDGA--------GAGAPSGGGRPPM----------------PGSRAAARMFHVMPATAVFAGDLPSYARGETPSKATTXXXXXXXXXXXXXXXXXXXXSVLDPA--GPXXXXXXXXX-ATLVAAWGAPVDEGTEDKDDAADAGTTSAVEDRGMGSRRAGSGVGNV 689
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV53_9PHAE3.100e-4137.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUB2_ECTSI1.990e-3941.55EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:601444..602967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1526
Hectar predicted targeting categoryother localisation
Exons1
Cds size1524
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791294.9618983-CDS-P-littoralis_Contig62:601443..6029671680791294.9618983-CDS-P-littoralis_Contig62:601443..602967Pylaiella littoralis U1_48CDSP-littoralis_Contig62 601444..602967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.147.1prot_P-littoralis_Contig62.147.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 601444..602967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.147.1

>prot_P-littoralis_Contig62.147.1 ID=prot_P-littoralis_Contig62.147.1|Name=mRNA_P-littoralis_Contig62.147.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=508bp
GDGRNDAGHSGSKATDEGNCADRLPNKTARLFSRLSSPRSGQQGGGGGDG
GGWAAGQKVWDPSPTSATTGYVTSSPAPDWRRLGLSSLGRTASFDEARQA
VSKNGLNAEESAKPRRASAFVSHGSALPPVVTEVGRRVSALGPSTTQAPR
QAPHYSDLLSAKTPSRSITSFNGHPGYSPPTLVGIRDPKIEGEGKGAVSR
GDLKSPTDPPGDMPRWSNEPTPGGNSRLHGAAAAAGGGGGAGGTPGSRAA
CMFHLMPATAAYTAGQTLRSPRKTPTTTAAPSAQGGAGSSRRWSVLGQAQ
SGPADNTGSDEGGATLVPAWGAPGKEGNGDEDDEGARGSGNRPAATMVAS
VRGGGGGGNAGGGDARENVSSGRARGLIMAPPPLAGRLGSQPRRPSVVGP
PDQDRGNAGANGYVAAWGATDEEDPAEEPTSRRGTGPADGGVAGRGMGAR
CAKALFGGGGGGGAGAGAGNVNEDGAPHKARGSGNRPAATMVASVRGGGG
GGNAGGGD
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mRNA from alignment at P-littoralis_Contig62:601444..602967-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.147.1 ID=mRNA_P-littoralis_Contig62.147.1|Name=mRNA_P-littoralis_Contig62.147.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1524bp|location=Sequence derived from alignment at P-littoralis_Contig62:601444..602967- (Pylaiella littoralis U1_48)
GGGGACGGGCGCAACGATGCCGGTCACTCCGGGAGCAAGGCAACGGACGA
GGGGAATTGCGCCGACCGACTCCCCAACAAAACCGCGAGACTGTTCTCCC
GGTTGTCCTCGCCAAGGAGCGGCCAGCAGGGGGGAGGCGGCGGCGACGGT
GGTGGCTGGGCAGCGGGGCAGAAGGTGTGGGATCCAAGTCCAACCAGTGC
CACCACCGGCTACGTGACCTCGTCCCCCGCACCGGACTGGAGGCGTCTTG
GCTTGTCGTCGCTGGGAAGAACGGCGTCTTTCGACGAGGCTCGACAGGCG
GTGAGCAAGAACGGTCTGAACGCGGAGGAAAGCGCGAAGCCCCGTCGCGC
GTCAGCGTTTGTCTCCCACGGTAGCGCCCTTCCGCCGGTGGTGACCGAGG
TTGGCAGGAGAGTCTCGGCGCTGGGACCCTCCACAACGCAGGCCCCGCGG
CAAGCACCCCACTACAGCGATCTGCTCTCGGCAAAAACGCCTTCGCGGTC
CATCACCTCGTTCAACGGCCACCCGGGATACTCTCCGCCAACCCTCGTGG
GGATTCGGGACCCTAAAATCGAGGGAGAGGGGAAGGGAGCGGTGTCGCGC
GGCGACTTGAAGTCGCCGACCGATCCGCCTGGCGACATGCCGCGCTGGAG
CAACGAGCCCACACCCGGCGGCAATTCACGCCTTCATGGCGCAGCAGCGG
CGGCGGGAGGAGGAGGAGGAGCAGGGGGGACACCGGGGTCCCGTGCGGCG
TGTATGTTTCACCTCATGCCGGCAACGGCGGCTTACACGGCGGGTCAGAC
CCTGCGTTCGCCGCGCAAGACTCCCACCACTACAGCAGCACCATCAGCGC
AGGGCGGGGCAGGCAGCAGCCGGCGTTGGTCTGTCCTCGGTCAAGCGCAG
TCGGGGCCAGCAGATAATACCGGTAGTGACGAAGGGGGCGCGACGTTGGT
GCCGGCGTGGGGGGCACCAGGCAAGGAGGGGAACGGCGACGAGGACGACG
AAGGGGCAAGAGGATCGGGCAATCGACCAGCGGCGACGATGGTGGCAAGC
GTTAGGGGCGGGGGGGGGGGCGGGAACGCGGGCGGAGGAGATGCCAGGGA
AAATGTATCATCTGGTCGAGCAAGAGGCTTGATTATGGCTCCGCCGCCTC
TCGCGGGAAGGTTGGGTTCGCAACCACGGCGTCCGTCTGTTGTCGGCCCC
CCCGATCAAGACCGCGGCAATGCAGGGGCGAACGGGTACGTCGCCGCGTG
GGGCGCCACAGACGAGGAGGACCCGGCCGAAGAACCAACCTCCCGCCGAG
GCACCGGCCCAGCTGACGGTGGCGTTGCGGGGAGGGGGATGGGTGCTCGA
TGCGCGAAGGCGCTGTTCGGCGGGGGTGGGGGCGGGGGAGCGGGAGCGGG
AGCAGGCAATGTCAACGAAGATGGCGCCCCACACAAGGCGAGAGGATCGG
GCAATCGACCAGCGGCGACGATGGTGGCAAGCGTTAGGGGCGGGGGGGGG
GGCGGGAACGCGGGCGGAGGAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:601444..602967-

>mRNA_P-littoralis_Contig62.147.1 ID=mRNA_P-littoralis_Contig62.147.1|Name=mRNA_P-littoralis_Contig62.147.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1524bp|location=Sequence derived from alignment at P-littoralis_Contig62:601444..602967- (Pylaiella littoralis U1_48)
GGGGACGGGCGCAACGATGCCGGTCACTCCGGGAGCAAGGCAACGGACGA
GGGGAATTGCGCCGACCGACTCCCCAACAAAACCGCGAGACTGTTCTCCC
GGTTGTCCTCGCCAAGGAGCGGCCAGCAGGGGGGAGGCGGCGGCGACGGT
GGTGGCTGGGCAGCGGGGCAGAAGGTGTGGGATCCAAGTCCAACCAGTGC
CACCACCGGCTACGTGACCTCGTCCCCCGCACCGGACTGGAGGCGTCTTG
GCTTGTCGTCGCTGGGAAGAACGGCGTCTTTCGACGAGGCTCGACAGGCG
GTGAGCAAGAACGGTCTGAACGCGGAGGAAAGCGCGAAGCCCCGTCGCGC
GTCAGCGTTTGTCTCCCACGGTAGCGCCCTTCCGCCGGTGGTGACCGAGG
TTGGCAGGAGAGTCTCGGCGCTGGGACCCTCCACAACGCAGGCCCCGCGG
CAAGCACCCCACTACAGCGATCTGCTCTCGGCAAAAACGCCTTCGCGGTC
CATCACCTCGTTCAACGGCCACCCGGGATACTCTCCGCCAACCCTCGTGG
GGATTCGGGACCCTAAAATCGAGGGAGAGGGGAAGGGAGCGGTGTCGCGC
GGCGACTTGAAGTCGCCGACCGATCCGCCTGGCGACATGCCGCGCTGGAG
CAACGAGCCCACACCCGGCGGCAATTCACGCCTTCATGGCGCAGCAGCGG
CGGCGGGAGGAGGAGGAGGAGCAGGGGGGACACCGGGGTCCCGTGCGGCG
TGTATGTTTCACCTCATGCCGGCAACGGCGGCTTACACGGCGGGTCAGAC
CCTGCGTTCGCCGCGCAAGACTCCCACCACTACAGCAGCACCATCAGCGC
AGGGCGGGGCAGGCAGCAGCCGGCGTTGGTCTGTCCTCGGTCAAGCGCAG
TCGGGGCCAGCAGATAATACCGGTAGTGACGAAGGGGGCGCGACGTTGGT
GCCGGCGTGGGGGGCACCAGGCAAGGAGGGGAACGGCGACGAGGACGACG
AAGGGGCAAGAGGATCGGGCAATCGACCAGCGGCGACGATGGTGGCAAGC
GTTAGGGGCGGGGGGGGGGGCGGGAACGCGGGCGGAGGAGATGCCAGGGA
AAATGTATCATCTGGTCGAGCAAGAGGCTTGATTATGGCTCCGCCGCCTC
TCGCGGGAAGGTTGGGTTCGCAACCACGGCGTCCGTCTGTTGTCGGCCCC
CCCGATCAAGACCGCGGCAATGCAGGGGCGAACGGGTACGTCGCCGCGTG
GGGCGCCACAGACGAGGAGGACCCGGCCGAAGAACCAACCTCCCGCCGAG
GCACCGGCCCAGCTGACGGTGGCGTTGCGGGGAGGGGGATGGGTGCTCGA
TGCGCGAAGGCGCTGTTCGGCGGGGGTGGGGGCGGGGGAGCGGGAGCGGG
AGCAGGCAATGTCAACGAAGATGGCGCCCCACACAAGGCGAGAGGATCGG
GCAATCGACCAGCGGCGACGATGGTGGCAAGCGTTAGGGGCGGGGGGGGG
GGCGGGAACGCGGGCGGAGGAGAT
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