mRNA_P-littoralis_Contig62.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.111.1
Unique NamemRNA_P-littoralis_Contig62.111.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.800e-21
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:  126 DHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTKSGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            +H  DLE  +CF R   MP   FEKL ELL P L  N H   +RT +G  SV IR+AVA+R+ AG SY+D+A++FG+ +P V   +W VIDAIN T
Sbjct:   72 EHADDLEERDCFKRMYRMPRHAFEKLAELLAPLLTVNKHFAELRTLNGAISVQIRLAVALRILAGASYLDVAVMFGLGLPTVYATLWMVIDAINST 167
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BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.250e-20
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:  126 DHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTKSGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            +H+ D+     F R   M   +F+KL ELL P LERN +   +RT SG   V IR+AVA+RM AG SYID+ALLFG+A   V  +MWQV+DAIN T
Sbjct:   73 EHVKDVRRRKLFRRMYRMEEHSFDKLAELLRPILERNDYSARLRTSSGAVPVKIRLAVALRMFAGASYIDVALLFGIAKESVFNVMWQVVDAINNT 168
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BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.690e-17
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 3 
Query:  126 DHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTKSGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            +H+ D++    F R   M   +F KL ELL P LE N      RT+SG   V IR+AVA+RM AG SY+D+A+LFG+A   V  ++W+V+DAIN T
Sbjct:   74 EHVRDIKRRGVFRRMYRMEEHSFNKLAELLRPFLESNDFYARKRTRSGAVPVKIRLAVALRMLAGASYLDVAVLFGIAKETVFHVLWEVVDAINNT 169
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BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5KXW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.560e-16
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  126 DHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTKSGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            DH  DL+    F R   M    F KL  LL P L+RN +    R + G     IR+A+ +RM AG SY+D+A+LFGV+   V  I+WQV+DAIN T
Sbjct:   79 DHAADLKKRKLFRRMYRMEEPVFNKLAGLLEPILQRNDYYARKRYRRGAVPTKIRLAIGLRMMAGASYLDVAVLFGVSKETVFSILWQVVDAINST 174
[Close]
BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5K347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K347_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.770e-16
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:  177 MPVETFEKLVELLHPSLERNAHMTCVRTK-SGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            M   TF+KLVELL PSL  NA    +R+  +G  +V +RVAVA+R+ AG SY D+AL+FG+++P    I+W VIDAINKT
Sbjct:    1 MEKATFDKLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKT 80
[Close]
BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5KBP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.340e-16
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 3 
Query:  123 ADHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTKS-GVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            A H  DL+  + + R   M   +F KLVELL PSLE NA    +R+ + G  +V +RVA A+R+ AGGSY D+AL+FG++  +   I+WQVIDAIN+T
Sbjct:  115 AQHEADLDKRHGWRRSYRMEKGSFHKLVELLRPSLEVNAFFGALRSPTNGAIAVEVRVAAALRILAGGSYWDVALMFGLSRAVTFDILWQVIDAINET 212
[Close]
BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5JMM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.840e-16
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:  126 DHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTKSGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            +H+ D++    F R   M   +F KL +LL P LE N      RT SG   V I +AVA+RM AG SY+D+A+LFG+A   V   +W+V+DAIN T
Sbjct:   74 EHVRDIKRRGVFRRMYRMEEHSFNKLAQLLRPFLESNDFYARKRTGSGAVPVKISLAVALRMLAGASYLDVAVLFGIAKETVFHALWEVVDAINNT 169
[Close]
BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5JT08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT08_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.910e-15
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 3 
Query:  123 ADHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTK-SGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            A H  DL+    + R   M   +F +LVELL PSL  NA    +R+  +G  +V +RVAVA+R+ AG SY D+AL+FG+++P    I+W VIDAINKT
Sbjct:  254 AQHEADLDKRQGWRRSYRMVKASFHRLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKT 351
[Close]
BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5KEZ6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.490e-15
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  126 DHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTKSGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            DH  DL+    F R   M    F KL  LL P L+RN +    R + G     IR+A+ +RM AG SY+D+A+LFGV+   V  I+WQV+DAIN T
Sbjct:   79 DHAADLKKRKLFRRMYRMEEPVFNKLAGLLEPILQRNDYDARKRYRRGAVPTKIRLAIGLRMMAGASYLDVAVLFGVSKETVFSILWQVVDAINST 174
[Close]
BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Match: A0A6H5KPH6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.530e-15
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  126 DHLTDLEAHNCFSRYNTMPVETFEKLVELLHPSLERNAHMTCVRTKSGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPIVLLIMWQVIDAINKT 413
            DH  DL+    F R   M    F KL  LL P L+RN +    R + G     IR+A+ +RM AG SY+D+A+LFGV+   V  I+WQV+DAIN T
Sbjct:   44 DHAADLKKRKLFRRMYRMEEPVFNKLAGLLEPILQRNDYYARKRYRRGAVPTKIRLAIGLRMMAGASYLDVAVLFGVSKETVFSILWQVVDAINST 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5L386_9PHAE6.800e-2151.04DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JDE6_9PHAE5.250e-2052.08DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHK3_9PHAE1.690e-1746.88DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KXW2_9PHAE1.560e-1644.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K347_9PHAE1.770e-1653.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBP1_9PHAE3.340e-1647.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMM2_9PHAE8.840e-1644.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT08_9PHAE1.910e-1546.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ6_9PHAE2.490e-1544.79DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KPH6_9PHAE2.530e-1544.79DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:509196..511780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size415
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791294.1884325-CDS-P-littoralis_Contig62:509195..5093591680791294.1884325-CDS-P-littoralis_Contig62:509195..509359Pylaiella littoralis U1_48CDSP-littoralis_Contig62 509196..509359 -
1680791294.2004185-CDS-P-littoralis_Contig62:511531..5117121680791294.2004185-CDS-P-littoralis_Contig62:511531..511712Pylaiella littoralis U1_48CDSP-littoralis_Contig62 511532..511712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791294.2141814-UTR-P-littoralis_Contig62:511712..5117801680791294.2141814-UTR-P-littoralis_Contig62:511712..511780Pylaiella littoralis U1_48UTRP-littoralis_Contig62 511713..511780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.111.1prot_P-littoralis_Contig62.111.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 509196..511712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.111.1

>prot_P-littoralis_Contig62.111.1 ID=prot_P-littoralis_Contig62.111.1|Name=mRNA_P-littoralis_Contig62.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MLPRSANRSTSPGVYHALADHLTDLEAHNCFSRYNTMPVETFEKLVELLH
PSLERNAHMTCVRTKSGVTSVHIRVAVAIRMPAGGSYIDIALLFGVAIPI
VLLIMWQVIDAINKT
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mRNA from alignment at P-littoralis_Contig62:509196..511780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.111.1 ID=mRNA_P-littoralis_Contig62.111.1|Name=mRNA_P-littoralis_Contig62.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2585bp|location=Sequence derived from alignment at P-littoralis_Contig62:509196..511780- (Pylaiella littoralis U1_48)
CATTTCTGCTCTCACAGCTGTAGTCGTTGCTGCTGTCGCTGTTGCAAGCG
GAGTGGCATACACCGCCCATGCTCCCAAGATCAGCCAACAGATCCACGAG
CCCCGGCGTCTATCATGCATTAGCGGATCACTTGACCGACCTAGAGGCGC
ATAACTGCTTCTCGCGCTACAACACGATGCCGGTCGAGACTTTCGAGAAG
CTTGTCGAGCTGCTTCACCCTTCCTTGGAAAGGAACGCACACATGACATG
TGAGAGAGTCACAGCTGGTTTTTTGGTTGCACATTTAATTTTCTCTCAGG
GACAACAGCAGCAGTAGTGCACACATACTTCGAAGTACACGGTCATGCTG
TACTGCAGCGCAGCCAAACAGCCGCACCAGTCGAACATCAAAACGCACGC
GTACGCACATGTGTTGTCATCCCATGTTCTCTGGCACACTAGTCTGCAAA
CTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAG
GAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTCT
CGCGAGCACATCGGCGAAAACGCATAGCCGCTTTCAAAGTAGCAAAGGAA
CACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTGGTTAACG
AGGGACCACTAGTCCACCGGGGCGACCGGATTTAGCATCAGCTATACTTG
AAAGCACAGCGCAACAGGACATACTTCACAAACTTTTTTCCTGGTTGTAT
ATATGATACGAAGATTTCGTTTTGTCACTGCTGTACACTCTGTACACGGG
CTGTCTCCTCCTACATGTGATACACACCGATACTTCGTGTGTGAAAACCA
CAACCTCTTCACTTGTTTTTTGTGCGCGTGAGAATGACGAACACAGCAGT
AGCAGCAGCAGAAAGGCGTAAACACATACTTCGGGTATACTCCGGAGTAC
CATATATCATATCAGCGGCAAAAATATAGAAACACACGTACATCAAATCT
TGACGTACTCGCACACAAGCTTTTTTATTCAAAGCAAGGTACACGACATG
TTTAGGGCGACATCATCACCAGCGTCGCAAGGACGGCATGGAGACACCAT
CCTCGACAACATCTGATGATACGTTTGTGTTTTTGTGTTTTTTCTTTTTC
TGTCTTCTCCGATTGCCGGGGCTACTTGTACGTTGCAGGCAGCACTCCAG
ACAGCAACTATCTGCTGTAGTCTGCAGCTACCTACTGACTGCTTGTAGCA
GCAGGTTATTAGTTACAAGTGGGGCGGGAGGAGACTGAACACGATGCTGT
AGTCAAATGAACGACGCTGAAAGTACGTTTGATGTTGGTACTGCTGTGAC
TGCTGTAGTTCAGTGATGCACACCGCGTAGGAAGGTGTATCTTCTTCGGT
CTTTCTTTTGTATTCCCTTGTAGTTTTTTTCTGTTTTTCGGATCTTCCTA
GGGCTCAGCACTTTTTGTGACCACGGGCTAGATTTTGGCGATGAGCTAAT
GTGAGAATCAACAACAACAACACAAGCCACACAGGAGGAGGAGTTCCACG
CAGCAGGCGTAGTGATACCATACCATGTACACGTCGCACAGACATTCGAA
CACCTCCCGACTTTTGTTACGCGTACGCACATATTTAGCATCAGCCACAC
TTGGAAGCACAGCGCATCGCAACAGGACGTAGTCTACTCCACAAACTTTT
TCCTTCCCTGGTCGTAGTCTATATGATAACGAAGATTTGCGTTTGTGACT
GCTGTACACGGCCTGCTCTTCCTACAACATATGATACCGATACTTCGTGC
TTGTTACATGATGAAAACCACCACCTCTGCAGTTTTTTTGTGCCCGTGAT
AATGACGAACACAGCAGCAGCAGCAGCAGCAGCAGCAGAAAGGCGCACAC
ATATCAGCGGCAAAAATATCAGAAAAATATAGAAACACACGTATATCAAA
TCTTGACGTACTCGCACACAAGAATGAGTTTTTTTTTTCTAGCACCGCAC
GAACAGCAGTACAAGGTACAAGCCACCACAGGAGGATTTCCACTCAGGCG
TAGTGATACCATACCATGCACTCTTCGTACAGACATGCGAACACCTCTCA
ACTTTTGCTCCCTGCTGGTATGCGTTGTGTGTGTTTCTCTTGCTGTGTGT
GTCCCCGTGTGATCTGCTGCTGTGGGGTCTGGAGGGTTCTTTATTTTCTT
GTGGGGGCTCCCGAGGCGTTTCGTGACCTGCTCAAAACACGCAAATGCGT
TGTGCGTATGGGGTTCCCCGACGTTCCACATGCTTCCCTTTCTATGAATT
TACCATGTGCTTACCTCGGCACACTTTCTAGCGCCTACAATGCCCGTTGC
TTCGAATATCGCGTAAAGCTGCTTTGCTGACCTCGATTCCTTCCTCTTTC
TATTGCGATGATGTCCTTCAGGTGTGCGCACTAAAAGCGGCGTTACCAGT
GTTCACATACGTGTTGCTGTGGCTATCCGGATGCCTGCTGGCGGCTCCTA
CATCGACATTGCGCTGCTCTTTGGCGTTGCAATCCCGATCGTGTTGTTGA
TCATGTGGCAAGTGATCGATGCCATAAACAAGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:509196..511780-

>mRNA_P-littoralis_Contig62.111.1 ID=mRNA_P-littoralis_Contig62.111.1|Name=mRNA_P-littoralis_Contig62.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig62:509196..511780- (Pylaiella littoralis U1_48)
ATGCTCCCAAGATCAGCCAACAGATCCACGAGCCCCGGCGTCTATCATGC
ATTAGCGGATCACTTGACCGACCTAGAGGCGCATAACTGCTTCTCGCGCT
ACAACACGATGCCGGTCGAGACTTTCGAGAAGCTTGTCGAGCTGCTTCAC
CCTTCCTTGGAAAGGAACGCACACATGACATGTGTGCGCACTAAAAGCGG
CGTTACCAGTGTTCACATACGTGTTGCTGTGGCTATCCGGATGCCTGCTG
GCGGCTCCTACATCGACATTGCGCTGCTCTTTGGCGTTGCAATCCCGATC
GTGTTGTTGATCATGTGGCAAGTGATCGATGCCATAAACAAGACG
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