mRNA_P-littoralis_Contig62.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.67.1
Unique NamemRNA_P-littoralis_Contig62.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig62.67.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.100e-15
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:  334 RIGCLLHILHLAVNAGMQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSS 501
            R+G +LHILH+++ AG  S+FFMGPL + SWHEW   H+ +LLG +WYNTSRS+SS
Sbjct:   67 RLGYVLHILHISITAGFTSVFFMGPLGKGSWHEWGTSHVFSLLGMVWYNTSRSNSS 122
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BLAST of mRNA_P-littoralis_Contig62.67.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.090e-12
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISWK 516
            M+  FFMGPL + SWHEW   HLVALL +LWYN SRSDSSCISW+
Sbjct:    1 MECEFFMGPLGKGSWHEWEDNHLVALLATLWYNISRSDSSCISWR 45
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BLAST of mRNA_P-littoralis_Contig62.67.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.620e-8
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSS 501
            M S++FMGPL + SWHEW + H+ +LLG +WYNTSRS+SS
Sbjct:    1 MTSVYFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESS 40
[Close]
BLAST of mRNA_P-littoralis_Contig62.67.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.650e-8
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  382 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSS 501
            M S  FMGPL + SWHEW + H+ +LLG +WYNTSRS+SS
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESS 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KR45_9PHAE2.100e-1560.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE1.090e-1271.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI1.620e-862.50Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KH75_9PHAE5.650e-862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:278844..279359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size517
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791291.6683965-UTR-P-littoralis_Contig62:278843..2790531680791291.6683965-UTR-P-littoralis_Contig62:278843..279053Pylaiella littoralis U1_48UTRP-littoralis_Contig62 278844..279053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791291.6783526-CDS-P-littoralis_Contig62:279053..2793591680791291.6783526-CDS-P-littoralis_Contig62:279053..279359Pylaiella littoralis U1_48CDSP-littoralis_Contig62 279054..279359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.67.1prot_P-littoralis_Contig62.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 279054..279359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.67.1

>prot_P-littoralis_Contig62.67.1 ID=prot_P-littoralis_Contig62.67.1|Name=mRNA_P-littoralis_Contig62.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MADSAQGRGQQPQSNNQSQQAESEPAPAAAASAFDGFVFAIRIGCLLHIL
HLAVNAGMQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCIS
WK
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mRNA from alignment at P-littoralis_Contig62:278844..279359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.67.1 ID=mRNA_P-littoralis_Contig62.67.1|Name=mRNA_P-littoralis_Contig62.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig62:278844..279359+ (Pylaiella littoralis U1_48)
CGAAGAGCCCAAAGAACAAACCAAAGAACGGCGAGTACGTGTGTGTGCCG
GTGCTGCTGCTGCTCTCACGATTTTCTCTCAAGCGCTCTAGAGGCGCGAT
GCTGATGAAGCAGCAGTAACAGCAGCACTAGCAGTGTGCACTGCTGTGCA
AAGCAGCCGCCTGTGATTCAACAAGCAGCAGTAGCCAGATCACACCACCA
GTGGGCCGCCATGGCCGATAGCGCGCAAGGACGCGGACAGCAGCCCCAGA
GCAATAATCAATCTCAACAAGCAGAGAGCGAGCCTGCTCCTGCTGCTGCT
GCTTCTGCTTTCGATGGCTTCGTCTTTGCTATCCGTATCGGATGTCTCTT
GCACATCCTGCACCTCGCGGTGAATGCGGGGATGCAGTCTCTGTTCTTCA
TGGGCCCCCTCACTCAGGCGTCATGGCACGAGTGGCCAAAGCCTCACCTC
GTCGCTTTACTTGGATCACTTTGGTACAACACCTCCAGGTCGGATTCATC
TTGTATTTCATGGAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:278844..279359+

>mRNA_P-littoralis_Contig62.67.1 ID=mRNA_P-littoralis_Contig62.67.1|Name=mRNA_P-littoralis_Contig62.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig62:278844..279359+ (Pylaiella littoralis U1_48)
ATGGCCGATAGCGCGCAAGGACGCGGACAGCAGCCCCAGAGCAATAATCA
ATCTCAACAAGCAGAGAGCGAGCCTGCTCCTGCTGCTGCTGCTTCTGCTT
TCGATGGCTTCGTCTTTGCTATCCGTATCGGATGTCTCTTGCACATCCTG
CACCTCGCGGTGAATGCGGGGATGCAGTCTCTGTTCTTCATGGGCCCCCT
CACTCAGGCGTCATGGCACGAGTGGCCAAAGCCTCACCTCGTCGCTTTAC
TTGGATCACTTTGGTACAACACCTCCAGGTCGGATTCATCTTGTATTTCA
TGGAAA
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