mRNA_P-littoralis_Contig62.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.28.1
Unique NamemRNA_P-littoralis_Contig62.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:116280..118223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1944
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791289.6913767-UTR-P-littoralis_Contig62:116279..1171931680791289.6913767-UTR-P-littoralis_Contig62:116279..117193Pylaiella littoralis U1_48UTRP-littoralis_Contig62 116280..117193 +
1680791289.7237175-UTR-P-littoralis_Contig62:117661..1182231680791289.7237175-UTR-P-littoralis_Contig62:117661..118223Pylaiella littoralis U1_48UTRP-littoralis_Contig62 117662..118223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791289.710457-CDS-P-littoralis_Contig62:117193..1176611680791289.710457-CDS-P-littoralis_Contig62:117193..117661Pylaiella littoralis U1_48CDSP-littoralis_Contig62 117194..117661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.28.1prot_P-littoralis_Contig62.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 117194..117661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.28.1

>prot_P-littoralis_Contig62.28.1 ID=prot_P-littoralis_Contig62.28.1|Name=mRNA_P-littoralis_Contig62.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MEANRSRRLPTRFCCARRKSPQRAVQHFSTGVEGALIFIRSWCCYRCHTL
QIRTVHARLVQGVFDRQNNSGRNLGYCMAARVRDEVLNETAKDLECTGVR
NQCPPAKRMTVFAGKGNCTTPIETVRALCKFQFLRSNCALSLDSSLRLAT
GVIRD*
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mRNA from alignment at P-littoralis_Contig62:116280..118223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.28.1 ID=mRNA_P-littoralis_Contig62.28.1|Name=mRNA_P-littoralis_Contig62.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1944bp|location=Sequence derived from alignment at P-littoralis_Contig62:116280..118223+ (Pylaiella littoralis U1_48)
TGGTGTGTGCGTACATGCACTCCCCCCGTGGTTTGGCGTCAAGATACGTG
CTCGTTGTCGAGAACGAGATATGTGGCAGAAAGGTGCGTCGGTGAGAGCT
TCTCCTGAAAAGGACCACGGACGGACGGGTGTTTTGAATATTGGTCCACA
GATACTCCAGAGAACCTAAGGTTCTCTTAGAGAATTTGTTTGATATCCCT
CTATGATAGCTGCGTATCCGTCGCCAAGGGTAAAGTAACTAGAAGTAGGG
GGTGCCGTTATTCTTGAACTTGTCTCTGGACGGCGCCATCTGTCCGCTGC
TGTTCCCCTTGAGTAGTGTCGGCTCCATCTGTGATGCACGTCGAATATCA
CTTGCGTTGTCTCTAGTGTGTGTACGTATCGATATTTTACACTTATAGGA
TATTTCCGCGATTTTTTATTCGCTTTTTCACCACATGTACCGTACGTCCC
ATAAGACTTCGTATACGAAGAGCATAGACCGCCTTTGAAGACAGGGTTTG
TTTCTCAAACAAACAAAACAGCAGCGTGGTAGTGCCGAAGAGGGCGCTAC
GTTTAGTTTCATATCGTTGGGTCGCTTCGCGAAAGCGTGTCGTTTGTTGC
TGGCCCCCTCTCCTCGTTTTAAAACTAGTCGGGCTTTGCGAATTGAGCTA
GCGAATTGAGCTATGGGGGGGAGGGGTTACCTTATGTAACACACGGCAGT
TACGGCAGCAAAAGCCGGGCTGTGTTGATACCTACTGCTGCATGCTACGT
TCTGGGTTCAAATGTATTCCTTGTACGGGACGGAGATTTCGCTTCTGCTG
CAGTATTTCGTCTGTTTGATGGATCAGGGGGTATGGTGTGATTGTGTTGC
TTTTCGTAAAACAATTCAATACAGTATTGTAGTAGTCGTTTCTTGACTGC
AGAAACACGTGTAAATGGAGGCAAACAGGAGCCGTAGACTACCGACGCGT
TTTTGTTGTGCACGAAGGAAGAGCCCTCAAAGAGCCGTCCAGCATTTCAG
CACGGGGGTGGAGGGTGCTTTGATTTTTATTAGATCTTGGTGCTGTTATC
GATGTCACACTCTCCAGATCCGCACTGTGCATGCGCGACTTGTACAGGGC
GTGTTCGACAGGCAGAACAACTCAGGGAGAAATCTCGGATACTGTATGGC
GGCGCGTGTCCGTGATGAGGTTTTAAATGAGACGGCAAAAGACCTGGAGT
GCACGGGAGTACGGAACCAGTGCCCCCCCGCGAAGCGTATGACCGTCTTC
GCCGGCAAGGGTAACTGCACGACCCCAATCGAAACGGTTCGAGCCCTCTG
CAAGTTTCAGTTTTTACGGAGCAACTGCGCTTTAAGTTTAGATAGTTCAC
TTCGTTTGGCGACTGGCGTCATCCGCGACTAGCGGCCAGCGATTTCATAC
TTGCGCCGGGTCTACTAGCACACGTCATATATACACGGAGTGCAGGAAGG
GGGTGAAAATCTCTGTTTAGAGATGGAAGTGGTGAAGTTTCTTCCCCTAA
ATTCTATTTCAATGGGGTGGAAAGGGAAAGGGAGGGCCGAGTAAATCATA
ACTCTGTTTAGAGATGGAAGGAAGGAGGGGGGGTAGTTGGGGCGCCTTGT
TTACAGGCGGTGGTAGGCGATAGGCATCGGTCAATGACGCGCAGCAACCG
TACCGTAGCTCGTAATGGTGATTCTCTTGTGCTTACGCACGCACAGTACA
CTCCGTTTACAGCCGGGTTGGTACATTTTGTTTCGTTTGAATATCATTTC
CTGCCACCGCCGTGCACAGAACTGTCTCTTTTGTGTACTGACCAGGTGTT
CGTCGGGTGGAATTTTGCGGCAACATGAATTACCGTGTGTTGAACAGGTG
ATAAATCGGGCCAACACGCCTCGGGCTCATTTATTTTCATTGCTATATCA
TACAATAATATTTTCAGTCTACCTTTTATCGGTGGCTTGTGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:116280..118223+

>mRNA_P-littoralis_Contig62.28.1 ID=mRNA_P-littoralis_Contig62.28.1|Name=mRNA_P-littoralis_Contig62.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig62:116280..118223+ (Pylaiella littoralis U1_48)
ATGGAGGCAAACAGGAGCCGTAGACTACCGACGCGTTTTTGTTGTGCACG
AAGGAAGAGCCCTCAAAGAGCCGTCCAGCATTTCAGCACGGGGGTGGAGG
GTGCTTTGATTTTTATTAGATCTTGGTGCTGTTATCGATGTCACACTCTC
CAGATCCGCACTGTGCATGCGCGACTTGTACAGGGCGTGTTCGACAGGCA
GAACAACTCAGGGAGAAATCTCGGATACTGTATGGCGGCGCGTGTCCGTG
ATGAGGTTTTAAATGAGACGGCAAAAGACCTGGAGTGCACGGGAGTACGG
AACCAGTGCCCCCCCGCGAAGCGTATGACCGTCTTCGCCGGCAAGGGTAA
CTGCACGACCCCAATCGAAACGGTTCGAGCCCTCTGCAAGTTTCAGTTTT
TACGGAGCAACTGCGCTTTAAGTTTAGATAGTTCACTTCGTTTGGCGACT
GGCGTCATCCGCGACTAG
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