mRNA_P-littoralis_Contig116.96.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: D7G4M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M9_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 2.770e-144 Identity = 233/299 (77.93%), Postives = 250/299 (83.61%), Query Frame = 2
Query: 218 MVRVGHFCVAAAAAADVCTAFVTPVGPAAAGLVAPSLQHARLSVSARSHSSDTFRHHQRDNCPSRRRQQLGLQMQSDGPSQWAGGGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGLSGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTTLPPGVEPTPKVEAAAPPAEQ 1114
MVRVGHFCV AAAAADVCTAFV PVG AA Q+L LQMQSDGPSQWAGGGINVSGEAPFEIRGFSLANAAALAGLAIT ASF+EYFSTGGAGGLSGIGFVYGIPIAL+GLALKYAELPPAPLQTTPEAEALFE+KATET++SIKSDVTRHRYGDEAHLDTT+KFLGLVMPQSDYPQL+YI+QT+EPNGELGF+MVFQSK TPFKRWVEPER++KYV FFGPGVDAEVIK++AQEKLVAIKLTTLPPG +PTPKV APPAE+
Sbjct: 1 MVRVGHFCVVAAAAADVCTAFVAPVGQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLALQMQSDGPSQWAGGGINVSGEAPFEIRGFSLANAAALAGLAITCASFYEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETIRSIKSDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFTMVFQSKMTPFKRWVEPERVEKYVAFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGAQPTPKV--TAPPAEE 297
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A835YHW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHW7_9STRA) HSP 1 Score: 290 bits (743), Expect = 1.290e-86 Identity = 168/303 (55.45%), Postives = 211/303 (69.64%), Query Frame = 2
Query: 242 VAAAAAADVCTAFVTPVGPAAAGLVAPSLQHARLSVSARSHSSDTFRHHQRDNCPSRRRQQLGLQMQSD------GPSQWAGGGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGLSGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTTLPPGV---EPTPKVEAAAP-PAEQKA 1120
+AAA AA C+AFV G AA + LQH +++ S RH Q +++ +D GP+Q + GGINVSGEAPFEIRGFSL NA + G+ IT+ASF EYF++GGAG LSG+GFVYGIP+AL+GLALKYAEL P + +TP A ALFE+KATET++ IK DVTRHRYGDEAHLD+T+K LGLV+PQSDYPQL+ + + V PNGEL FSM+F S TPFK WV+P R++KY FFGPGV A V K++++ +LVAIKLTT+ P EP+ AA P P E+KA
Sbjct: 8 LAAALAAVPCSAFVPSSG--AALVPRARLQHVGVALRRGVAVSQQRRH-----------QCFAMKVSNDFDDSETGPAQISAGGINVSGEAPFEIRGFSLGNAFLIGGVVITTASFAEYFTSGGAG-LSGLGFVYGIPVALIGLALKYAELAPVGVSSTPAAAALFEEKATETMRKIKKDVTRHRYGDEAHLDSTVKALGLVLPQSDYPQLQGLKEEVAPNGELAFSMIFSSPETPFKMWVDPARVRKYTTFFGPGVTASVEKVSSEARLVAIKLTTVNPDAPTEEPSAAAAAAVPVPEEEKA 296
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A7S2V4E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4E2_9STRA) HSP 1 Score: 275 bits (703), Expect = 5.860e-82 Identity = 145/218 (66.51%), Postives = 174/218 (79.82%), Query Frame = 2
Query: 470 GGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGLSGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTTLPPGVEPTPKVEAAAPPAEQKAE 1123
GGIN+SGE PFEIRGFSL +A G+A+T+ SF E+F + G+ GLSGIGFVYGIPIALVGL+LKYAEL P P++TTPEAEALFE+KATET+K IKSDVTRHRYGDEAHL++T+K LGLVMPQS+YPQL+++ + VE +GE FSMVFQSK TPFK W EP +I K+ FFGPGV+AEV+K+N E+LVAIKLTT V P E PA +AE
Sbjct: 8 GGINLSGEPPFEIRGFSLGDAFLGVGVAVTAISFTEFFMSAGSEGLSGIGFVYGIPIALVGLSLKYAELAPVPVRTTPEAEALFEEKATETIKKIKSDVTRHRYGDEAHLESTVKALGLVMPQSEYPQLQWLDEGVE-DGEYTFSMVFQSKETPFKVWNEPAKIPKFETFFGPGVNAEVVKVNGAERLVAIKLTTGEKKVPPA-ATETEEAPASVQAE 223
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A7R9UF83_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF83_9STRA) HSP 1 Score: 266 bits (681), Expect = 3.820e-78 Identity = 135/218 (61.93%), Postives = 166/218 (76.15%), Query Frame = 2
Query: 455 SQWAGGGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGLSGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTTLPPGVEPTPKVEAAAPPA 1108
+Q A GGIN SG+ PFEIRGFSLA G +T SF EYFS GG G+SG+GFVYGIP+ L+GL+LKYAE+PP + TTP A+ FE KATET+K IK DVTRHRYGD+AHLD+T+K LGL +PQ D+P+LEY+ Q V PNGEL FSMVF+S TP++ W EP+RI++Y FFGPGV+AEV KI+++E+LVAIKLTT G + T A APPA
Sbjct: 50 AQVAAGGINTSGKPPFEIRGFSLATLFLGGGFLLTVGSFAEYFSEGGGSGVSGLGFVYGIPVLLIGLSLKYAEIPPVEVVTTPAADDAFEKKATETIKQIKQDVTRHRYGDDAHLDSTLKALGLQLPQKDFPELEYLKQDVAPNGELAFSMVFRSMETPYRMWAEPDRIKRYETFFGPGVNAEVEKISSEERLVAIKLTT---GEKVTEAPAAEAPPA 264
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A7S1U5M2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5M2_9STRA) HSP 1 Score: 259 bits (663), Expect = 1.460e-75 Identity = 133/218 (61.01%), Postives = 163/218 (74.77%), Query Frame = 2
Query: 458 QWAGGGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGLSGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTT-----LPPGVEPTPKVEAA 1096
Q A GGIN SGE PFEIRGFSLA + + G +T ASF EYF+ GG GL GIGFVYGIP+ L+GL+LKYAEL P + +TP+ EA FE KATETLK IK DVTRHRYGD+AHLD+T+K LGL +PQ ++P LEY+ + GEL FSMVF+S TP+K W E +R+++Y FFGPG++AEV+K+NA+E+LVAIKLTT P EP PK EAA
Sbjct: 55 QVAAGGINTSGEPPFEIRGFSLATSFLVGGFVLTVASFGEYFAEGGGAGLGGIGFVYGIPVLLIGLSLKYAELAPVEVVSTPQGEAAFEAKATETLKKIKQDVTRHRYGDDAHLDSTLKSLGLQLPQKEFPTLEYLQEETTNEGELAFSMVFRSPETPYKIWAEEDRVKRYETFFGPGLNAEVVKVNAEERLVAIKLTTGEKPAEPKAAEPAPK-EAA 271
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A7S1ZC13_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZC13_9STRA) HSP 1 Score: 238 bits (607), Expect = 1.220e-67 Identity = 119/198 (60.10%), Postives = 149/198 (75.25%), Query Frame = 2
Query: 467 GGGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGL--SGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTT 1054
G G+N +GE PFEIRGFSL N LAG+ +T ASF EY S G GL SG+GFVYGIPI L G ALKYAE+ P P +TP+ E +FE KAT+ ++ IK DVTRHRYGDEAHLDTT+K LGLV+P DYPQL+ + + + +GEL F+MV+QS TPFK W + +R +KY FFGPGV AEV+KI+A+++LV I+LTT
Sbjct: 69 GAGVNNAGEPPFEIRGFSLGNLVILAGVVVTFASFAEYLSESGGDGLNVSGLGFVYGIPIFLAGAALKYAEIEPVPCYSTPDGERIFESKATDIIQKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKDYPQLQELREEMTEDGELAFTMVWQSYDTPFKLWADEKRRKKYETFFGPGVGAEVVKIDAEQRLVGIRLTT 266
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A4D9DHB4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHB4_9STRA) HSP 1 Score: 238 bits (607), Expect = 1.520e-67 Identity = 127/218 (58.26%), Postives = 161/218 (73.85%), Query Frame = 2
Query: 470 GGINVSG-EAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGLSGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTTLPPGVEPT------PKVEAAAP 1102
GG N+ G + PFE+RGFSLA A G IT S EY + G+ GLSG+GFVYGIPI L+GL+L+YA+L P P+Q+TPEA+ LFE K+T T++ IK DVTRHRYGD+AHLDTT++ LGLVMP ++PQL+Y+TQ VE NGEL F+MVF+S TP++ WVEPERI +Y FFGPGV A V K++A+ +LVAIKL T G P P+ E+AAP
Sbjct: 69 GGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVQSTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVE-NGELAFTMVFKSDDTPYRLWVEPERISRYETFFGPGVWATVEKVDAERRLVAIKLVT---GERPASAQASRPEGESAAP 282
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A8J9X6Z0_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6Z0_PHATR) HSP 1 Score: 235 bits (600), Expect = 2.890e-67 Identity = 127/224 (56.70%), Postives = 157/224 (70.09%), Query Frame = 2
Query: 467 GGGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGL--SGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTT-LPPGVEPTPKVEAAAPPAEQKAE*D 1129
G G+N +GE PFEIRGFSL N AG+ IT ASF EY S G GL SG+GFVYGIP+ L G ALKYAE+ P P+ TTP AE +F+ KAT+T+ IK DVTRHRYGDEAHLDTT+K LGLV+P YPQL+ + Q +GEL F+MV+QS TP+K W +P R+ KY FFGPGV A+V+KI+A+++LV I+LTT P VE +A P A +A D
Sbjct: 12 GAGVNNAGEPPFEIRGFSLGNLVVGAGILITFASFAEYLSESGGDGLNVSGLGFVYGIPVFLAGAALKYAEINPVPVATTPAAERVFDRKATDTILKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKAYPQLQELRQDEVNDGELAFTMVWQSVDTPYKMWADPRRVLKYEKFFGPGVYADVVKIDAEQRLVGIRLTTGTRPPVEDQDTSTSAPPVANPQATAD 235
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A448ZRR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRR3_9STRA) HSP 1 Score: 233 bits (594), Expect = 7.640e-67 Identity = 120/198 (60.61%), Postives = 148/198 (74.75%), Query Frame = 2
Query: 467 GGGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTGGAGGL--SGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTT 1054
G G+N +GE PFEIRGFSL N +G+ IT SF EY S GA GL SG+GFVYGIP+ L G ALKYAE+ P P ++P AE +F+DKATE + IK DVTRHRYGDEAHLDTT+K LGLV+P DYPQL + + VE +GEL F+MV+QS TP+K W + R++KY FFGPGV AEV+KI+A+++LV IKLTT
Sbjct: 4 GAGVNNAGEPPFEIRGFSLGNLVIFSGIMITILSFAEYLSDSGADGLNVSGLGFVYGIPVFLAGAALKYAEIEPVPCISSPAAERIFDDKATEIIAKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKDYPQLMELREDVE-DGELTFTMVWQSIDTPYKMWADERRVKKYETFFGPGVAAEVVKIDAEQRLVGIKLTT 200
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Match: A0A7S2UH94_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH94_9STRA) HSP 1 Score: 235 bits (600), Expect = 2.010e-66 Identity = 124/213 (58.22%), Postives = 152/213 (71.36%), Query Frame = 2
Query: 467 GGGINVSGEAPFEIRGFSLANAAALAGLAITSASFFEYFSTG-GAGGL--SGIGFVYGIPIALVGLALKYAELPPAPLQTTPEAEALFEDKATETLKSIKSDVTRHRYGDEAHLDTTIKFLGLVMPQSDYPQLEYITQTVEPNGELGFSMVFQSKTTPFKRWVEPERIQKYVNFFGPGVDAEVIKINAQEKLVAIKLTTLPPGVEPTPKVEAA 1096
G G+N +GE PFEIRGFSL N G+AIT SF EY G G GGL SG+GFVYGIP+ L G ALKYAE+ P PL ++ E++ LFE K TE + IK DVTRHRYGDEAHLDTT+K LGLV+P YPQL+ + Q P+GEL F+MV+QS TP+K W + R++KY FFGPGV AEV+KI+A+++LV IKLTT P PT EA+
Sbjct: 82 GAGVNNAGEPPFEIRGFSLGNLVIALGVAITVLSFTEYLGDGSGDGGLGVSGLGFVYGIPVFLAGAALKYAEIEPVPLFSSDESQTLFEAKKTEVMDKIKKDVTRHRYGDEAHLDTTVKRLGLVVPGKAYPQLQELRQETTPDGELAFTMVWQSLDTPYKMWADERRVKKYDTFFGPGVTAEVLKIDAEQRLVGIKLTTGPKPTTPTSPEEAS 294 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig116.96.1 >prot_P-littoralis_Contig116.96.1 ID=prot_P-littoralis_Contig116.96.1|Name=mRNA_P-littoralis_Contig116.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=325bp MKHINTHLTTAAPQLTPNPKRKMVRVGHFCVAAAAAADVCTAFVTPVGPAback to top mRNA from alignment at P-littoralis_Contig116:341395..351448- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig116.96.1 ID=mRNA_P-littoralis_Contig116.96.1|Name=mRNA_P-littoralis_Contig116.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10054bp|location=Sequence derived from alignment at P-littoralis_Contig116:341395..351448- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig116:341395..351448- >mRNA_P-littoralis_Contig116.96.1 ID=mRNA_P-littoralis_Contig116.96.1|Name=mRNA_P-littoralis_Contig116.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=975bp|location=Sequence derived from alignment at P-littoralis_Contig116:341395..351448- (Pylaiella littoralis U1_48)back to top |