mRNA_P-littoralis_Contig62.167.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.167.1
Unique NamemRNA_P-littoralis_Contig62.167.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:675591..676440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size851
Hectar predicted targeting categoryother localisation
Exons1
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791289.3129044-CDS-P-littoralis_Contig62:675590..6761841680791289.3129044-CDS-P-littoralis_Contig62:675590..676184Pylaiella littoralis U1_48CDSP-littoralis_Contig62 675591..676184 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791289.32702-UTR-P-littoralis_Contig62:676184..6764401680791289.32702-UTR-P-littoralis_Contig62:676184..676440Pylaiella littoralis U1_48UTRP-littoralis_Contig62 676185..676440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.167.1prot_P-littoralis_Contig62.167.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 675591..676184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.167.1

>prot_P-littoralis_Contig62.167.1 ID=prot_P-littoralis_Contig62.167.1|Name=mRNA_P-littoralis_Contig62.167.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp
MRHKNTQDVRNHFVAHELIRNASEGEDGEGHETKESGQSLLPLMMNRRCS
PDRHFSRLPRVFSAGRVGGRGNRLLVAATACWSHRAASRDARHTRVALES
GLTSRHVVVWCLKLRRIITEWTSVTKDAQKVADKSRRRTEWARETPQRPK
AYCTRAGGVTREPRLVALVWCAHMKRLGVVPGQTAESRWSRIRSRREV
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mRNA from alignment at P-littoralis_Contig62:675591..676440-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.167.1 ID=mRNA_P-littoralis_Contig62.167.1|Name=mRNA_P-littoralis_Contig62.167.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=850bp|location=Sequence derived from alignment at P-littoralis_Contig62:675591..676440- (Pylaiella littoralis U1_48)
GTCGATGGAAGGGGGAGGGCACGGGCGTCTGTGTGTGTGCGTGTGTGCTT
TGTCGTGTGTTGTGAGTGCGTATGATGTGTGGTTTGGTTGCGTTGTTCGT
TTGTTGCATTTTGTTTTGGTGTGTACATCCTCCGGGCGTTCGTACTGAAT
GTGAGCGCCGTGGAGCACTTGTTCTTGTGGCAGTTGTGGTGTAATTTCTT
GCGGGCAGTGGGGGAGGGGGTCGGGCGTGGAGTTCAATATCATAGCTGTG
GATTCGATGAGACATAAAAACACACAGGATGTGCGCAACCATTTTGTAGC
GCACGAGCTGATACGGAACGCGAGTGAGGGAGAAGATGGGGAGGGGCATG
AAACAAAGGAGTCTGGCCAAAGTTTGTTGCCTCTCATGATGAACCGGCGA
TGTTCCCCTGACCGTCATTTTTCACGACTCCCAAGAGTTTTTAGCGCTGG
AAGGGTGGGCGGCCGCGGCAACCGCTTGTTGGTCGCGGCAACCGCTTGTT
GGTCGCACAGAGCGGCTTCGCGTGATGCGAGGCACACACGCGTTGCACTC
GAGAGCGGCCTGACATCAAGACATGTAGTGGTCTGGTGCCTGAAGTTAAG
AAGAATAATCACGGAGTGGACGAGTGTCACAAAAGATGCACAAAAAGTGG
CTGACAAGTCAAGAAGGAGAACGGAGTGGGCACGAGAGACTCCACAAAGG
CCGAAAGCATACTGTACCCGCGCTGGCGGCGTCACCCGTGAGCCTCGGCT
TGTCGCCCTCGTTTGGTGCGCACACATGAAAAGGCTCGGGGTAGTCCCCG
GCCAAACGGCTGAATCGCGTTGGTCCCGTATACGCTCAAGAAGGGAGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:675591..676440-

>mRNA_P-littoralis_Contig62.167.1 ID=mRNA_P-littoralis_Contig62.167.1|Name=mRNA_P-littoralis_Contig62.167.1|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig62:675591..676440- (Pylaiella littoralis U1_48)
ATGAGACATAAAAACACACAGGATGTGCGCAACCATTTTGTAGCGCACGA
GCTGATACGGAACGCGAGTGAGGGAGAAGATGGGGAGGGGCATGAAACAA
AGGAGTCTGGCCAAAGTTTGTTGCCTCTCATGATGAACCGGCGATGTTCC
CCTGACCGTCATTTTTCACGACTCCCAAGAGTTTTTAGCGCTGGAAGGGT
GGGCGGCCGCGGCAACCGCTTGTTGGTCGCGGCAACCGCTTGTTGGTCGC
ACAGAGCGGCTTCGCGTGATGCGAGGCACACACGCGTTGCACTCGAGAGC
GGCCTGACATCAAGACATGTAGTGGTCTGGTGCCTGAAGTTAAGAAGAAT
AATCACGGAGTGGACGAGTGTCACAAAAGATGCACAAAAAGTGGCTGACA
AGTCAAGAAGGAGAACGGAGTGGGCACGAGAGACTCCACAAAGGCCGAAA
GCATACTGTACCCGCGCTGGCGGCGTCACCCGTGAGCCTCGGCTTGTCGC
CCTCGTTTGGTGCGCACACATGAAAAGGCTCGGGGTAGTCCCCGGCCAAA
CGGCTGAATCGCGTTGGTCCCGTATACGCTCAAGAAGGGAGGTC
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