mRNA_P-littoralis_Contig62.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.91.1
Unique NamemRNA_P-littoralis_Contig62.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:403742..410567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1320
Hectar predicted targeting categorysignal peptide
Exons4
Cds size870
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.91.1prot_P-littoralis_Contig62.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 404768..410169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791289.0304184-UTR-P-littoralis_Contig62:403741..4037811680791289.0304184-UTR-P-littoralis_Contig62:403741..403781Pylaiella littoralis U1_48UTRP-littoralis_Contig62 403742..403781 +
1680791289.040325-UTR-P-littoralis_Contig62:404755..4047671680791289.040325-UTR-P-littoralis_Contig62:404755..404767Pylaiella littoralis U1_48UTRP-littoralis_Contig62 404756..404767 +
1680791289.0961745-UTR-P-littoralis_Contig62:410169..4105671680791289.0961745-UTR-P-littoralis_Contig62:410169..410567Pylaiella littoralis U1_48UTRP-littoralis_Contig62 410170..410567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791289.0509002-CDS-P-littoralis_Contig62:404767..4048001680791289.0509002-CDS-P-littoralis_Contig62:404767..404800Pylaiella littoralis U1_48CDSP-littoralis_Contig62 404768..404800 +
1680791289.0622525-CDS-P-littoralis_Contig62:405846..4061941680791289.0622525-CDS-P-littoralis_Contig62:405846..406194Pylaiella littoralis U1_48CDSP-littoralis_Contig62 405847..406194 +
1680791289.0832655-CDS-P-littoralis_Contig62:409680..4101691680791289.0832655-CDS-P-littoralis_Contig62:409680..410169Pylaiella littoralis U1_48CDSP-littoralis_Contig62 409681..410169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.91.1

>prot_P-littoralis_Contig62.91.1 ID=prot_P-littoralis_Contig62.91.1|Name=mRNA_P-littoralis_Contig62.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp
MRRAMLSPRQKSNYTRTSMVSGNVIRKAAVAFILVLGTVANAAEFPNFGN
LTAAADSSGSTTPCPTETTACAENTECVACLAEYANQESSSGGATNSGCD
DVSELACDEWGFSERCNEKMKNTLPGSSACWRSSPSARSTSAAGLRASSL
VRSVQPLPSRALWRPFWLPLWARPCERPAASRQSHDLLRCRPLHACVDDG
FLVGLSISCLPGRLLPPPHGWGCDVDTLHLIRDVSRKNLHTHVRKNRPAQ
RTLVVESESGGKALLLQQRPPAYDRCHLSIIDVVWCFLG*
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mRNA from alignment at P-littoralis_Contig62:403742..410567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.91.1 ID=mRNA_P-littoralis_Contig62.91.1|Name=mRNA_P-littoralis_Contig62.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6826bp|location=Sequence derived from alignment at P-littoralis_Contig62:403742..410567+ (Pylaiella littoralis U1_48)
CATCACAAACATTTGTGCGCGGAGGCAGGCGACACCACAGGTGAAAAGAC
GGTACGATCTAGGATGCACAGAGGGATTGTGCCGTCCAGTAACCAGTTTC
GCAGCCAAGGACGGAGGTAGACGAGCAGCGACGAACGGGGAAGAGCTTGG
TCGATCTCACTCCGAGCGTGAACTTTTTTTTCAGAAGACTTGTACCTCAA
GTGCACAGCGGAGTTTTTTAGGGAACTGATTGGAAAGGAACAACAAGAAA
GAGCTGTTGTGTGAGAGAGCGGCGGTAATGGAGGTGATCTAACTAAGGCA
ACGCCGGCAGTGAAGAAGTGTTACGAGAGCATGGGGCATGGTGCTGGTGA
TGTGGCCTTGGGCAACGCCAACAGCGACGTGGACCCAGACAAGGAGGACA
TGTTTAGGGCGACATCATCACCAGCGTCGCAAGGACGGCATGGAGACACC
ATCCTGTTGATACGTGTTTGTTTTTGTGTTTTTTTTTTTCTGTCTTCTCC
GATTATTGCCGGGGCTTGTATGTTGCAGGCAGCACTCCAGACAGCAACTA
ACCGCTTGTAGTAGTTTGCAGCTTCCTACTGACTGCTTGTTATAAGTGGG
GCGGGAGGAGACTGAACACGATGTTGTAGTCAAATGAACGACGCTGGAAG
TACGTTTGCTGTTGGTACTGCTGTGACTGCTCTAGTTCAGTGATGCACAC
GCCGTAGGAAGGTGTATCTTCTTCGGTCCTTCTTGGGTATTCCCTTGTAC
CAGGTAGTTTCTTTCTGTTTTTCGGATATTTCTAGGGCTCAGCACTTTTT
GTGACCATGGGCCAGATTTTGGCGATGAGCTAATGTGAGAATCAACACGT
CTGTTGTTGGTCTAAAACGCGTATCATACGTTTTTTACCGGTATTTCTTG
TATTTCGCTGAGTCTTTCCACCGCCTTCGTCCGTTGTTCGGGATCATCTG
CTGTACCCCGCCCTTCGCCCCACCTACGACTTCTAATCTCGCCTCTCTCG
CGACACTCTTCCAGGTATGTGCATGTATGCGCCGAGCGATGCTCTCTCCA
CGTCAGAAGGTGATCATGTTGTGTAGTCGGGTGCAATGCGAGAGAGACGG
ACGTTGAAAGGTTTTTCCGACCTCGATCCCTCTCGCTCTCTCGCCCTCTC
TATTTCTCTTTCTTCTCCGACATCGTATATTTTCTCGTTGGTGTGCAAAA
AAACGTGTCCGTGATAGCGTAAGCGTTGGTGTGTTGTGGGATAGTGTCGT
CTGCGAGGATGGCTATCGATGGAAATTCTGTCCGTATGATACGTCTTTCC
TTCTCCGGTACCATGCCTTATCCTTGTTTGGCATACAAGTACAACGTGCG
TGTGGTAAGCGTTGCTCTCTTCTCCGCCCGATGATGTCTTGTTGGGTAAT
TGTCCGCGATGAGGCAGGGTGGCTTTCGATGTCTTGACTTCCCCGGTGTT
TTGGTGTTTCGATATTTCAAGGCGGCTTGGGGCACAGCAGTAATACCTCC
TCCCTCTCTCCCCACGGTGCTCACTCTGACTGACTTTGGTTGGGATTATG
AGGGCGCACCACGAGAAGGTTCGCCTATTTCACCTTCGTGTACCGCTCGA
CTCGACTGGACTCTACTCGGTGACCGTTCGTCTGCAGATTCTGTCGTAAC
GAGGTGTTGTTGACAGGATCTCAAAAATCCGATTTTTGCTCATAGAGCAG
GCACTTACTTGCGCGAGATTGCTGCTTCCATGATATGCAGCACGCACACT
ACTACGTCCATTCTCTCCCCCCTCAACATCTGTTCTTTCGGGAGCTCCTT
TGCGCCAACGCGCACGGCTCTGCTTTCGTTCGTGCATCTGTCTGTCGTGA
GACAATACTACCCTGACTTTCATGCATGAGAGGTGTGAAAAACATCGTTC
TCTTGATTGACACGAGCGGATCTGACACTTTCATCTTATGTTAACTTTAC
TACTGTAGGTCGGTTTCCGACTTCCGATTCCTGCTGACCAGGCGCGACTC
ATCGGCGTAGAACACTTATCCTTTTGTCTCTCGTCACGCTTATAGTGTAC
CTTGTTCGTTCCGCTCCTTTCTTTCTCGTGTGGTCAAAATATATTTGCCA
GTTAGTCGAACTACACTCGCACAAGCATGGTGTCTGGAAATGTCATCCGG
AAGGCGGCTGTTGCCTTCATCCTGGTCTTGGGAACCGTCGCCAACGCCGC
GGAGTTCCCGAACTTCGGGAACCTCACTGCCGCCGCCGACTCGTCAGGCT
CGACGACGCCGTGCCCCACAGAAACAACAGCCTGCGCGGAGAACACCGAA
TGCGTTGCTTGTCTTGCGGAATATGCCAACCAGGAATCATCCTCCGGGGG
TGCGACCAATTCGGGCTGTGACGATGTCTCCGAACTTGCGTGCGACGAGT
GGGGGTTCTCGGAGAGGTGCAACGAGAAAATGAAGAATACGTTGCCTGGG
TCGGTGAGTTTTTCAATATCCTCTCCCTCTAGACGCGGTTACAGTTACTT
TTGTGTTTTCTTTCAGTTAAAATGCAGTGTCGTTGTTGTGTGTGTATGTG
TGTGTGTTTTCGTCCCATTTATTGTGGGCACCAGTCAGTACCTATCGGTA
CGAAGTGGGTGCACGATCGCCAGGGATACATACACAGAAGGAAGGCCACA
TAGGAGTGGTTCTCCTTTTTTTCCTCCACCCACCCACCCCACACACCGTC
TGCGGTGCTCGTCTTTTTTGCCTTTCGGCTTTTTATCGCGAGAAGGGGTT
CAACCATCCCTTACCCTCGTCAACTGCTAAGTCGAGCGTGTTCGTTTGGT
GTAGTGGTATTATGTTGGCCCTGTAATCAGATTCACAAACAACGGCGAAG
CACCGCATATGATAGTGGTGTGATGAGAATGATGAAACGGAAAAAAACGT
GCTGGAGCAGAGCTATTTTACACGTTGGCTTAAGTTACAGACTGCAGCAA
TGCCGCAGCAGCCTTACCGTCCCCTCGATACAGGTAGTGGAGATACGTGT
GGTTTTCTGATCACAGCATTTTGTCGTTACACAGTACAGGTGTATCAGCA
ACACTGCATTGTGTGTGGCTTTACATCATACGGAGTACCAGGTACACAAC
AACACCTGTTCGGAGAGTCAGAATTTTCGAAGGAAGGGTGGCTGCGTACT
CCGTCGTCGGTCACGCGTGAAAACGTGCGCTCCAGCGGAAATGTTCACAT
CCCATCCGTGCCCTCGTCGCCCAACGACCTCGGCGGATTCGATCATTTTT
TTCTGTGTTTATTGGTCCCCACGTCAACATAGCTACCCAAAATCCTACAT
ATTCCGCCCATCACTCCGATCTCTTCCACGAACAAAATTCTTTCGTGAGA
GGGCAGCGTTTCGTCCTCTCGTACGCTAACAAATTAGACTCGTCGCAGAG
TCTGCGGACCTCTCTGTGAACCTTTTTTTTTCTTGCAATTACACTTACCA
ATTGTAACACTCCGTCTCCTTCTCTAACTGGCCAGCATTTAATTTCACTT
GTGCTTGGAGGCAACACTTGATGTCACATGTAAATGTACGGACTGGCGGC
TATGCGGACTTTTCGGCGGACATTTTGTTCCACTTGCAATTACACTGACC
ATTGCATGCCAACTGAAATTCAACGAACGGCAGCTGCAGGTCTTGATCTG
CAGACAACCTGTTTTTCACTGTTATCACGTGCAAATAGCAGCATTGTCTT
CCATTGCGCCTCTTTTCGAGCCTTGTGGCGCTAATTTCCTTTGTATCACA
TACAATTACTTTCTTTTTATGGGGACTTTCCCGTGCATTTTCTACCTACT
GGCGATATCACCACACACATTGGCCAGCATTCCATCTCCCCCCGTGTTGT
ATGTGTGTGTCGCCTTCACTTTTACGACCATCCCAGAATCTATGCCCAGT
ACCTCCTGATGTCCGTAATGTTGACTCATCCGATACAGGGGACGCTTTCC
GTGGTCACAGCAGGCTACCTATCCCCCCCCCGAAAGGGTATAGAGTAACG
GCACCTTTTAATGTCCGTACTGCTGACTCATCCGATAGGGGACGCTTTGC
GTGGTCGCAGCAGGCTGCCTACCCCCCAAAACAAGGTATTTTTACATTAC
AGTACGCCGGGAAATCCTTGCTATCCAATGAACGTGCATTCAGGAAATTC
GACCAAGTAAAACGGACCCCGACAGATCACACAACGCTACAAAGTTGTAC
ACGAAGAAAAGTGTAAATAGCAGTAGTGGTCGTCTAGTGTGGATGACGGC
TGTATGATAGTGACATCACAACCATGGTGGGCACATACAAGACGATAGTA
TATCGAGGTGAGTTGACCTCCTGATGGTCCTTCCTGTTGGTAAGCAACAG
GCCGGACCTCCGGTCACCCCGTTGCCACTCTACCTTTTGGATTCTCCTTG
CTAAATCTACGGAAGAAAACCTTGACCCTGCCTCTGGTCGTGGGCTTACA
CGACCACTCCTTGGGACCAACTACGGCTGCGCTCACTCACGGTAGCCTAG
GTTCATAGTGGCGTCGACGAACTAAACAAAGAAATAAAAAAGATGGCGCG
AAGTGCTGAGCCCAGATATAGAGACTTTGCAATTCCCATCGACTCAGCAG
CGAACAAGGTAAAGCATCACGACAACATACAAACGTGGGAAACAAAGCAA
AGCAAGAAACAAGAAGAAAAAATAATTATCAAAATAAACATCGAAACCGC
AGTGAAATTCAGGACGAGACGGCATGATGAGGGCGGGCGCAAGGAGACGG
GGGGAATGTCAAACAAGAGTGCGTGCGCTATCACAGCAGCCAGTCAATCT
GGTGCATGCCGTGCTACTTTTTCCATCTCTCCCCTCTTGCTCTCCTCTGC
CGCCGTCGTCACACCATTCTGAGTCTTTCTACGCCTGCTTCCCCGAGATT
TCCCCTCCTGGGTTATCTGCTCGGTTGTGCTGGATTCAGGCTTCTCGTTT
TCCCGCTCGCTTTCTGCTTGCCTCCTTCTCGTCCTCGTGCCAGGCGGTCA
TCAACCTCGCAGCCACCTTCACCACCCCTGTGTACCACGAGAGCCCCTTC
TTCTCCTTCGCGGCCCCTTCGTCCACAGGGCGGTGCCGATTCCAAACCAT
GTCGTAGTCGGCTATCATCCGTTGAACCGCGTGCGTGCGTGGCTCTCCGT
AAGCTTTGAAAACGTCGTTCTCCAATGATTTTAGGCAGTTTTGCGCCGGA
CGGCCTCGGCTTCTGGGTCTCTCTGTGCGTGCCTCATTCATTTTGTTTCA
CACTGACTACGGTAATTAACCAAACCCCCTTTCACATCGCACCCTCTTAG
TCTTGACCGTCTCGGTGATGATCGTGGCGGCGTAATCCGCCAATATACCC
GAGCGTTTTTTCGTATGATAGGCGCGGGAGCCAGGTTGTTGCTTATATTC
TCCGCGACCAACGACTCGCTGACACCCATCACCAATGAATGCCAGTACCT
CTTGTTTGACCGTCCGTGTGTTTTTGGACGTTGTTTCGCACAAAAAGAGG
TGTGACGGTCGCAAAATGTGCTGGCTTTTCGAGTACGTAGTACGCGGTCT
TGGTTCGTGACAACTCAGCGCGAAAAAGTGGGCTCGGGGGTGCTAAAGTC
ATGAAAAAGTATGGTGCGGAGAGCGACGGCCGTTCAAAACCATCAGTGCC
ATGTACGATACGCTACGGTAATGACGACGATAACAATTATGTCCTCATGC
GGGACCGCGAGTTTCAGAGATCGGGCGAGCGCGCACAATAAATACGAACA
ACAGCAGGACTCGCGGTATGCTTCTAAAAGGCACGCAGCGAGAATACGCC
CCCCGAGTGCCCTGGGCCGACGAAACGGCTTTGTGGCAACACCCATTTAT
TTATCGTACAATACTGCTGTGAAAGACCCTTAACACCTGCCAACCTCCTC
CCCCGGTCTTGTGCTTTTTATGCTTCCATCGTCGATCAGAGTGCCTGTTG
GAGGAGTTCACCGAGTGCGAGATCGACCTCTGCAGCGGGGCTACGGGCTT
CTTCGCTCGTTCGTTCGGTGCAACCATTGCCTTCTCGGGCGCTTTGGCGG
CCGTTCTGGCTGCCGCTATGGGCACGGCCCTGTGAACGGCCGGCAGCGTC
TCGCCAGTCGCACGATCTACTGAGGTGCCGGCCACTACATGCATGCGTGG
ACGACGGATTTCTCGTCGGATTGAGTATATCTTGCCTCCCCGGTAGATTG
TTACCCCCACCGCACGGGTGGGGGTGTGACGTAGACACACTACACTTGAT
TCGAGACGTTTCGAGGAAAAACTTGCACACACACGTTAGGAAAAATAGAC
CCGCGCAACGCACACTAGTTGTCGAATCGGAGAGCGGAGGAAAGGCCTTG
CTTTTGCAGCAGCGGCCGCCGGCGTACGATCGATGTCATCTCTCCATCAT
CGATGTCGTTTGGTGCTTCTTGGGTTAAACGAGCCGTGCGGTTTATCGAC
TGGCGGACAAGGTTAGGGGTATCATAGGCACGGCGGGGAGCGGGTTTATG
TATTGGATTATAAGAATCATGAAACTCTAGGGTTCGAATACTGTAAGAGA
GAGCGCACGGGCGAACCCTTTCTTATTAGTACTTCATTGCAAGAATTGAG
TTGCGCTCTTGTTCTACGGTTGGCTGGCGGACGGGGGTATCATAGCGATA
GATACCGCGAGGAGTCTGCTTGCTGTAGAGTACACACAAGCGTATCGTTT
GCGCTCTTCTGGCGACTCCATAGTCCGGCAGTCAGTGCGTGCGTTCACAG
AGTAGTCCAGAACATGCACACTTACGCTTCAATCCCATGCACACAAGGCC
ATGGATAACGATTTGACGTTTGTTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:403742..410567+

>mRNA_P-littoralis_Contig62.91.1 ID=mRNA_P-littoralis_Contig62.91.1|Name=mRNA_P-littoralis_Contig62.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig62:403742..410567+ (Pylaiella littoralis U1_48)
ATGCGCCGAGCGATGCTCTCTCCACGTCAGAAGTCGAACTACACTCGCAC
AAGCATGGTGTCTGGAAATGTCATCCGGAAGGCGGCTGTTGCCTTCATCC
TGGTCTTGGGAACCGTCGCCAACGCCGCGGAGTTCCCGAACTTCGGGAAC
CTCACTGCCGCCGCCGACTCGTCAGGCTCGACGACGCCGTGCCCCACAGA
AACAACAGCCTGCGCGGAGAACACCGAATGCGTTGCTTGTCTTGCGGAAT
ATGCCAACCAGGAATCATCCTCCGGGGGTGCGACCAATTCGGGCTGTGAC
GATGTCTCCGAACTTGCGTGCGACGAGTGGGGGTTCTCGGAGAGGTGCAA
CGAGAAAATGAAGAATACGTTGCCTGGGTCGAGTGCCTGTTGGAGGAGTT
CACCGAGTGCGAGATCGACCTCTGCAGCGGGGCTACGGGCTTCTTCGCTC
GTTCGTTCGGTGCAACCATTGCCTTCTCGGGCGCTTTGGCGGCCGTTCTG
GCTGCCGCTATGGGCACGGCCCTGTGAACGGCCGGCAGCGTCTCGCCAGT
CGCACGATCTACTGAGGTGCCGGCCACTACATGCATGCGTGGACGACGGA
TTTCTCGTCGGATTGAGTATATCTTGCCTCCCCGGTAGATTGTTACCCCC
ACCGCACGGGTGGGGGTGTGACGTAGACACACTACACTTGATTCGAGACG
TTTCGAGGAAAAACTTGCACACACACGTTAGGAAAAATAGACCCGCGCAA
CGCACACTAGTTGTCGAATCGGAGAGCGGAGGAAAGGCCTTGCTTTTGCA
GCAGCGGCCGCCGGCGTACGATCGATGTCATCTCTCCATCATCGATGTCG
TTTGGTGCTTCTTGGGTTAA
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