mRNA_P-littoralis_Contig116.88.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.88.2
Unique NamemRNA_P-littoralis_Contig116.88.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 3.000e-73
Identity = 157/381 (41.21%), Postives = 224/381 (58.79%), Query Frame = 2
Query:  242 MPHKRATHLYLMCKKELYRTF---SKSRLEDGEAGIISYPYFVKVWRENRPQLKAKSGTEFMKCYDCTQHKAVLFGMPGIRATIDEAARQVAQVKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFALPMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVV----QVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQGTQQVAVGMKEYMHHEDFTGMDKDGSFT-----RSLSVGSP 1348
            MPHK    +    K+ELY+ F   +K    +  +  +S  +F ++ R++RP ++ + G EFMKC  C   K    G PG++ ++D +A         AH ++V+ DR V+ N +  A  A+    PL FV M  DAA  ++ ALP     THG DRG+SERQKIMA+ + G FV+V+ TPQ LGGG NL CTA HLA+ R+ D +  +   P  G ++     QVDNCV ENKN+  +GY   LV   V+  VEI FM +GHTH  IDQVFS+F+   K ++IFTR   AE  R SY+ +PV  +TLRN GNF+ +  G   V+R+P IT  RAF++ + G  +V V +K++MH  ++ G+ +DG+         L +GSP
Sbjct:    1 MPHKDHVVICSSNKEELYQDFLTEAKRVYPEDTSKRVSKAHFFRIPRKDRPHIRVRVGGEFMKCDICVTLKERRHGSPGVKPSLDSSALASIDRDLAAHRQMVQADRLVIANRTGDAMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPS-GCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGR--VNRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDALPHDLFIGSP 378          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 8.310e-72
Identity = 161/381 (42.26%), Postives = 219/381 (57.48%), Query Frame = 2
Query:  197 VLGFLDSYANTFGQHMPHKRATHLYLMCKKELYRTFSKSRLE-------DGEAGIISYPYFVKVWRENRPQLKAKSGTEFMKCYDCTQHKAVLFGMPGIRATIDEAARQVAQVKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFALPMQSTMTHGTD-RGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQGTQQVAVGMKEYMHHEDFTGMDKDG 1315
            V+ FL  + + +GQ MP+   ++LYL  K ELY  +SK+  E            + S  YF +VW  +   LK K   +FM C  CT  K  + G  G R  +DEA R+  Q  Y  HL+ VE DR        +A  A+   TP   V +Q DAA QS FA P+ ++  HG D RG++ERQKI   LV GI ++VF+ PQ LG GSN+VCT     L  LF +  +      +G + +Q+DN V ENKN+ ++G+LA+LVGRGV+ +V + FM +GHTHI IDQVFS FA + K   +FTR   AE F  +Y TLPV   TL NL NF+ + Q   V  R+P ITK +AF + ++GT  VA  +K  +HH+D+ G   DG
Sbjct:  254 VVAFLHRHEDMYGQKMPNSDQSYLYLKSKLELYEEYSKNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQDVERDRMYGARLENQAAVAKSNGTPWETVYLQVDAANQSNFATPIGASQAHGVDDRGYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTT----LFTLFMELTLQWKHS-LGDVFIQMDNTVSENKNNFIMGFLAALVGRGVMRSVTLCFMMVGHTHIQIDQVFSCFARSVKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQP--VTRRIPNITKFQAFNISKEGTAIVAK-VKTKLHHDDWLGFSADG 626          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.320e-56
Identity = 132/306 (43.14%), Postives = 174/306 (56.86%), Query Frame = 2
Query:  416 MKCYDCTQHKAVLFGMPGIRATIDEAARQVAQVKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFALPMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEP----FIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
            MKC DCT+ K  L G PGIR   +   R         H  IV  DRE++ +    A+  Q   TPL  V +Q D A Q  +AL      TH    G+SERQK+MA+   G FV V   PQT GGGSNLVCTA+ LAL RL    +  GT+P    +I  L +Q+DNCVGENKN++++ ++  LV  GVIG+ E+ F+ +GHTHI IDQVFS+F+     R IFTR    E FR+SY  LPV   TL NLGNF+ ++     ++ L KI     F+  R G    +V+V  K +MH + + G+   G
Sbjct:    1 MKCSDCTEIKEKLHGAPGIRPIQNTRQRAEIVRHQKEHHHIVSKDRELLTSRMEAARREQANGTPLNQVTIQQDCACQIRYALGTVHPQTHA---GFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRL----SAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLN-LRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATG 298          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 4.800e-42
Identity = 127/369 (34.42%), Postives = 180/369 (48.78%), Query Frame = 2
Query:  266 LYLMCKKELYRTFSK-SRLEDGEAGI-ISYPYFVKVWRENRPQLKAKSGTEFMKCYDCTQHKAVLFGMPGIRATIDEAARQVAQVKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFALPMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVD---------------NCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVS--RLPKITKARAFQLLRQGTQQVAVGMKEYMHHEDFTGMDKDG 1315
            +Y    +E+Y  F++ +R   GE     S PYF ++WRE RP +K     +FMKC DCT+    L G PGIR   D   R         H  IV  DRE++ ++   AK  Q   TPL  V +Q D A Q  +AL      TH      SERQ++          +    P+  G        A +    R  +   V+G      T V  VD               NCVGENKN++++ ++  LV  GVIG+ E+ F+ +GHTHI IDQVFS+F+     R IFTR    E FR+SY  LPV   TL NLGNF+ ++     ++  R+  +TK  AF++ +   + V+V  K +MH + + G+   G
Sbjct:    1 MYHTFLQEMYARFAEHTRHVHGEVDSGFSRPYFNQIWREERPLIKLARFGDFMKCSDCTEINEKLHGAPGIRPIQDTRQRAEIVRHQKEHHHIVSKDRELLTSHMEAAKREQANGTPLNQVTIQQDCACQIRYALGTVHPQTHA-----SERQRLFGA------AEGHGRPRRRGVRGRPFRPADN----RWREQPGVHGAVVGPQTTVCNVDQAWPEVLHQASPPSDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRRIRNVTKFWAFRVGKVAGE-VSVWAKRFMHSDAWLGLTATG 353          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.580e-38
Identity = 93/219 (42.47%), Postives = 128/219 (58.45%), Query Frame = 2
Query:  665 PMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
            P ++T+      G SERQK+MA+   G FV V   PQT GGGSNLVCTA+ LAL RL +     G    I  L +Q+DNCVGENKN++++ ++  LV  GVIG+ E+ F+ +GHTH   DQVFS+ +     R IFTR+   E FR+SY  LPV   T  NLGNF+ ++    +   L KI     F+  R G    +V+V +  +MH + + G+   G
Sbjct:  196 PSRTTVRVYDFSGLSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSRLSVGTLGRSIFTRIQLGELFRESYRELPVRIGTPTNLGNFKGLYLAD-IKLNLRKIRNMTTFRAFRVGKIAGEVSVWVDRFMHSDAWLGLTATG 413          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.120e-32
Identity = 78/178 (43.82%), Postives = 107/178 (60.11%), Query Frame = 2
Query:  788 GSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
            GSNLVCTA+ LAL RL       G   +I  L +Q+DNCVGENKN++++ ++  LV  GVIG+ E+ F+ +GHTHI IDQVFS+F+     R IFTR    E FR+SY  LPV   TL NLGNF+ ++     ++ L KI     F+  R G    +V+V  K +MH + +  +   G
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLN-LRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLDLTATG 186          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.100e-28
Identity = 83/222 (37.39%), Postives = 123/222 (55.41%), Query Frame = 2
Query:  677 TMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQT-------LGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
            T  +   +G S+      + ++G+  ++ + PQT       L GGSNLVCTA+ LAL RL    A  G   +I  L +Q+ NCVGE KN++++ ++  LV  GV+ + E+ F+ +GHT I ID VFS+F+     R IFTR    E FR+SY  LPV   TL NLGNF+ ++     ++ L KI     F+  R G    +V+V  K +MH + + G+   G
Sbjct:  240 TTLYTATKGVSKSCFFTVVSLLGVGGRIPIAPQTAACVPALLCGGSNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLN-LRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATG 460          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.780e-28
Identity = 79/203 (38.92%), Postives = 107/203 (52.71%), Query Frame = 2
Query:  788 GSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVS-------------------------RLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
            GSNLVCTA+ LAL RL       G   +I  L +Q+DNCVGENKN++++ ++  LV  GVIG+ E+ F+ +GHTHI IDQVFS+F+     R IFTR    E FR+SY  LPV   TL NLGNF+ ++     +                           L KI     F+  R G    +V+V  K +MH + + G+   G
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLXLPLKPTXXXXXXXXXXXXXXXXXXXNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATG 212          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.820e-26
Identity = 72/178 (40.45%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  788 GSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
            GSNL CT + LAL RL       G    I    +Q+DNCVGENKN++++ ++  LV  GVIG  E+ F+ +GHTHI IDQVFS+       R IFT++   E FR+SY  LPV    L NLGN + ++     ++ L KI     F+  R G    +V+V +K +MH + + G+   G
Sbjct:   10 GSNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYKELPVHVGILTNLGNLKGLYLADNKLN-LRKIRNIATFRAFRVGKVAGEVSVWVKRFMHSDAWLGLTATG 186          
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.200e-25
Identity = 64/142 (45.07%), Postives = 91/142 (64.08%), Query Frame = 2
Query:  890 QVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQGTQQVAVGMKEYMHHEDFTGMDKDG 1315
            QVDNC  ENKN+  +G+   LV   VI  VEI FM +GHTH+ IDQ+FS+F+   K ++IFTR   AE  + SY+ +PV  +TL N GNF  + QG   V+R+P IT  RAF++ + G  +V V +K +MH  +  G+ ++G
Sbjct:   20 QVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGR--VNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNG 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE3.000e-7341.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG9_9PHAE8.310e-7242.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE1.320e-5643.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE4.800e-4234.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE2.580e-3842.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE1.120e-3243.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE1.100e-2837.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE2.780e-2838.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE2.820e-2640.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE1.200e-2545.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:305553..313909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7739.XP_002600801.1
Model size2279
Max annot lvl33208|Metazoa
KEGG koko:K19983
Hectar predicted targeting categorymitochondrion
Exons8
Evalue4.76e-15
EggNOG OGs2CXPP@1|root,2RYXE@2759|Eukaryota,3A0MY@33154|Opisthokonta,3BPZN@33208|Metazoa,3DCNG@33213|Bilateria
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003010.1
Cds size1023
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.88.2prot_P-littoralis_Contig116.88.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 305614..311580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789480.7231767-UTR-P-littoralis_Contig116:305552..3056131680789480.7231767-UTR-P-littoralis_Contig116:305552..305613Pylaiella littoralis U1_48UTRP-littoralis_Contig116 305553..305613 +
1680789480.8078089-UTR-P-littoralis_Contig116:311580..3119551680789480.8078089-UTR-P-littoralis_Contig116:311580..311955Pylaiella littoralis U1_48UTRP-littoralis_Contig116 311581..311955 +
1680789480.8161852-UTR-P-littoralis_Contig116:313089..3139091680789480.8161852-UTR-P-littoralis_Contig116:313089..313909Pylaiella littoralis U1_48UTRP-littoralis_Contig116 313090..313909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789480.7355793-CDS-P-littoralis_Contig116:305613..3058381680789480.7355793-CDS-P-littoralis_Contig116:305613..305838Pylaiella littoralis U1_48CDSP-littoralis_Contig116 305614..305838 +
1680789480.7497523-CDS-P-littoralis_Contig116:306586..3068351680789480.7497523-CDS-P-littoralis_Contig116:306586..306835Pylaiella littoralis U1_48CDSP-littoralis_Contig116 306587..306835 +
1680789480.7612174-CDS-P-littoralis_Contig116:307952..3081161680789480.7612174-CDS-P-littoralis_Contig116:307952..308116Pylaiella littoralis U1_48CDSP-littoralis_Contig116 307953..308116 +
1680789480.7706437-CDS-P-littoralis_Contig116:308761..3088501680789480.7706437-CDS-P-littoralis_Contig116:308761..308850Pylaiella littoralis U1_48CDSP-littoralis_Contig116 308762..308850 +
1680789480.7791648-CDS-P-littoralis_Contig116:309261..3093811680789480.7791648-CDS-P-littoralis_Contig116:309261..309381Pylaiella littoralis U1_48CDSP-littoralis_Contig116 309262..309381 +
1680789480.7905266-CDS-P-littoralis_Contig116:309599..3097291680789480.7905266-CDS-P-littoralis_Contig116:309599..309729Pylaiella littoralis U1_48CDSP-littoralis_Contig116 309600..309729 +
1680789480.7995105-CDS-P-littoralis_Contig116:311534..3115801680789480.7995105-CDS-P-littoralis_Contig116:311534..311580Pylaiella littoralis U1_48CDSP-littoralis_Contig116 311535..311580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.88.2

>prot_P-littoralis_Contig116.88.2 ID=prot_P-littoralis_Contig116.88.2|Name=mRNA_P-littoralis_Contig116.88.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=341bp
MVLRSLFLRAHQPLIISICFSTGFRLPLYNAKRERSGTGSDQKRQVLGFL
DSYANTFGQHMPHKRATHLYLMCKKELYRTFSKSRLEDGEAGIISYPYFV
KVWRENRPQLKAKSGTEFMKCYDCTQHKAVLFGMPGIRATIDEAARQVAQ
VKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFA
LPMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTA
IHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGR
GVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*
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mRNA from alignment at P-littoralis_Contig116:305553..313909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.88.2 ID=mRNA_P-littoralis_Contig116.88.2|Name=mRNA_P-littoralis_Contig116.88.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8357bp|location=Sequence derived from alignment at P-littoralis_Contig116:305553..313909+ (Pylaiella littoralis U1_48)
GGGGTACGAATGCGGGGAAGGTAGTATCGAAATTCCACGCTGTACCGACC AAAACAATAATATGGTACTTCGAAGTTTATTTTTAAGAGCCCACCAACCA CTAATTATTTCTATATGTTTTTCCACGGGTTTCCGACTTCCCCTCTACAA CGCTAAGAGAGAGCGCTCGGGGACGGGGAGCGATCAGAAGCGACAGGTCC TGGGCTTTTTGGACTCCTACGCCAACACCTTTGGTCAGCACATGCCACAC AAGCGAGCCACACACCTGTACCTCATGTGCAAGAAGGTGTGTCAGGCGTT ACAGGTCCGTGTATCGTCGAACAGTTGTTTGTGATCCCTCTGCGGTCTTT CTCTAAGTTACAGGGGCGAAAGCGATGTTTTTGTCCAGCGGTTATCACGT TGAAAGTCATTGTGGGGTATCGGCCCTTTGCGTACCCGACGATCAAAACA GAGAAGGTGGCACATGCTTGAATAATAGCAGGTACTTTCAACGCGACAGC GGTAGTTTCACCAGGTACCGGTTACTGCTTCATGCTAAGCCCTTCCTCTC CAACACGTTTTACATCGCTCACTAGCCCAGTCTTTTGTTTTCATTTCTTT TTGTCATATGCGCATCACTTATCTGAACGACTGAAGTATAGGTTTTCAAG AGGATCGCGACGGCTCCATTTCAATATAATATCGTGAAAATTATCCCGCT CCCGAAAACGTTACCATGCACGATGTTTGAACATCATGCGCATGTGTGTG ATGCTACTTGGTGGCTTTTGTCGACATCATCACCCAGGAGACTTGCCGCG TTGAGACCAGCATGTTACTGTGGTACGTAGGTGCTTTGTATATTCCTTGG GTAGGCCTTATTTAACAAACAGGGCACACGCTACCGGTTGTTGTGCAGAT TGAGGATTCTAAAAAAAGTATTTTTGCCGCCTCTAGTTGGTTCTCTTTTT TTACAGGGTGGGGTTGTTGCTTCGTGTGCCGATACGGACTCGCTCGAACT TTGCCCACACAACCTTGAAATGTAAACGCCTCAGGAGCTTTACCGCACCT TCAGCAAGTCGCGCCTGGAAGACGGAGAGGCCGGCATCATCAGCTACCCG TACTTCGTGAAGGTCTGGCGCGAAAATCGGCCTCAACTTAAAGCCAAGAG CGGCACCGAGTTCATGAAGTGCTACGACTGCACGCAGCACAAGGCAGTGC TATTCGGAATGCCGGGGATTCGGGCGACTATAGACGAAGCGGCACGCCAA GTCGCCCAGGTCAAGTACGACGCGCACCTCAAGGTGAGAATCAGGGTATT GGTGTCGATATCCGTGACAGTTTGACTAGTGCGCATCGCCTACCTTTGTT CTGTCGTGTGACTTATCTCTTGTTGCCAGCTTCTCAACAGAGCGATCGAT GGACATGGCGTACTACTATATACGAAGCATATAATACTCGGAGTACATGT TAACCGAGATTGTGGGGTTGGATAATATATAAATATTTGTTTTGTATGAG GAAGGCGATATCGAAGTATCTATTGACACGCCATACGATCGGGTGTCAAC ATGCAGTGAAGGGCGCTTCAATATCGCTTCAATATTTTGTAATGGGTTGC AAAAAACAAAACATATGGTGTTTCGAAAGGTGGCCGACAATCATACATCA AAGGAACAAAGCACCCTGGGGCTACAACGATTAATGTATCCAATTTGTCA ATCAAGAGTATAGAGGTTTGAACAGCCACATTGCCGAGAATGAAGAACTG CTGGAGACTTCATCGGAATAGTGTAGGCGACCACCTTGTTTTTGTTATTA CTGAAGTTGGTCCAGTTGTTGTTCGACATAAATGCACAAATATGTATTGT CCCTATCTTCTTCGTAACTGGTGATGTCGCGAATAGCAGTTCGAATATCA AAGGGTAAAGCGCAACATGCGCATTGCTCGGGCGATCGTCGTGGAATACC AGCACACATGAAACAACGCAACTCGTGCGTTTACAGCATCAAAAAAAGGG GAACACCGTGCGGTGGTGCATGATGCGAGGGTCATGGGTTGTAATAGTAT GATTTGAACAGAATACATCGACACCTCACTTACATAATACAACCCTGACC CTGATCCTAACCCATGAAGAACAACAAGAAATCCAACCACATGACAATCA CTGCGGTAGCAGTGACAGCGTTCCCGTCGAGCGTGCACGTCGTACAAGAG AGAGACACACAGAACAAAATTCCCCGCGCATTCTGTACTTGTTTTGGGCC TCAGATTTTTGGGATGCCGACACAACAAGTTGTGTCGATGTGCCCTTCAA CGCTCATCGCTGAAAGGTTGTATCATTCGCGTGATTGTATATCAATCCTT GCACTCGTCGCGTGGTCCTTCTGTGTGTGATCGGTCTCGTTTTTCGTCAG ATCGTCGAGCTCGACCGCGAGGTCATGGACAACAATTCTCGCAGGGCAAA GGCCGCCCAACTCGCGCTCACTCCCTTGGCGTTCGTCGTGATGCAAGCGG ATGCCGCCGCGCAGTCGGCCTTTGCTCTCCCGATGCAGTCGACCATGACA CATGGCACAGACAGGTATGCGTCGTCGGGTCACATCCCTAGTGTTCTGTA GATAGAACGGAATGCACAATGTCTCTTGTAAAGAATTTATTTTTGCGTTA AAAGAAGCACTTAGTCAGACTGGGCTATGTATTATTGCTAACAACGTTGA GGCCGGGTATCTCCCTGGGCTAGTTCAGCTGAAATGGTGGCCACACTCAT GTCAGGAAACATCGTGGCGCCACATCATCGTCTCTCCGATGTGACGTATA AGTTTTTTGAAATAGGAATGAGCACATGTTTTTTTTTTCGTACACACACA CCAAACACTGGACTCCATTTTTTTCTGGCTTTGAACCACGGCAAATCCGG GGGGGTTGCTGTTGCATGTGGACGGGGGCTTACCAACTTATGATCGCCTG ACGTCGGGATTCTGGGAGCCTTTTCAGGCGATGTACTCGGCGTAGTTGTT TCAACAGGAATTGGATTAATCTGTTGGAAGAGCTCCATTCGGGTCGTTCC GCTGCTTTGATTTATTTTCGTCATGTGTTGGACGCACCGCCTTTACCTTT TTTTGAGGATTTTATTCCCCGCCCCAAGAGTTTCTCAGCACCAAGAGTTT CTCAGCACGCATAACCAACTAACCCATCCCCCCCCCTGCTGTTTTGTACG AAATGCTAGGGGCTGGTCCGAACGCCAGAAAATCATGGCCATCCTCGTGG TGGGCATTTTTGTCAAGGTGTTCCTCACGCCGCAAACTCTTGGAGGAGGT GCGCGGGTGGGGTTGGTATCTAAGGACATCGTACGTAGCTCTTGGCGGTA AAATCTTCCCTTCCGTACAGAAATTTGCAACCTCTGTCCTGCTTCATCGT ATTGCCTGCATGGCTGTCGGCACGGCGCGTCTCTGCGACCGTGGCCATAG AAGTCATATACAACAGGTAGATATTCCTCTCGTGGCCGCAGCATTTGTAC AGTAGTACGCCCAATAACAAACAGTTGAAGGCAGCTGACTTTTCGGAGGG CGTGTTTGTCAGTGTTTGTTTCTCGACCAAATGTTTACATTGATGTGTCC ACTGATTATGTTTGATCATTTTGACTGTATACGCACAGTATCGTTTATTG AACGGTTTACATCGCAACCTAATCCGCACACGCGCAACCTCATTCGTTTC GATTGACAGGCAGTAACCTGGTCTGCACCGCCATCCACCTTGCCCTCTGC CGCCTTTTCGACGACCACGCCGTTAACGGCACGGAACCCTTCATCGGGAC TCTTGTCGTGCAAGTGGACAACTGTGTGGGTACGTGCTAGTGCACATTAT TTATTTGTGCCGTGCCTAACCCCCCCCCCCCCATGTGCCTAGCAGTTGCA CACCTCGATCGATAAGCGGGCTGTTCTAGTGGCTCAACACTGTATCACGG GTACGTTTTTTTATTTTCATTTTATAATGCTGGATAACCCTTTGAGCCAC AAAATGAGCAATATTCGAACCGAACCGTATCACCAATTACGTGCCAGGCG AGAACAAAAATCATGTGCTGGTGGGCTACCTCGCGTCGCTCGTCGGGCGA GGTGTGATTGGCAACGTGGAGATCCAGTTCATGCCGATTGGCCACACTCA CATCCTGATCGACCAGGTCTTTTCTAAGTGAGTTCACACATTCACGGCTC CTCAGGCCAGTCGCCTTTGCAAGACCGGCCGGGCCTGTCGTCGTTTGGTG CCCACGTATACTTTTTTTTGTGATTCTGTCAAATCCGCATGGAGAAGTAG ACACGATAAACCTACGCCTTTAGCCTTTTATGCTCTGAGATGAATGCTTT TGGACGGTCCGTGCGAAGGAAAACTTCTGCCGTGTCTCCCCCCCCCCCCC TACATGGCCTCGTTTTCCCCCGTTTCGTTAAAAAACAAAACGAAAACAAT TACACGGCCTTCACCGCCGCCGTAACACCGTCTACGAGCTTGTTGTTGGG CAAGGCTGGTTTCTCTCGCTAGTATTTTTGAATGCAGTCCTTTCAAAATG AACGTAGATAGCTGCCATCCCGAAAAGCACTTCCTTTTATACCTGTTCCG TCCTCCACTACCACCGGACCTCCCTCTACAAGTGTTTCAAGGCTGGACAT CTCAAACGTCTCCCGCCTTCGATCACGCCGGGGGATATGTTTAGGTATAC CTCTCATTGCTTGAGGTTGCCTTTTGTTGATCGTCACAACATACGATACT TTTGTCAACGATGTGCTTGACACGATTCTATTTGTGACGTCCGGGTGTAG CGAAATATGTTCGGACATCGAGCAAGCACCTCTAATGTTTCATGAGTCAC TTCGGACCTTGTACTACCGCCGAGTAAGGAGTTTCATCCTTTTGAGATCT GTGAGTGTTCGGAAACTGAAAGATTCTTTGTCGTAAGGAAGCACTTTTAA ACACACACAATAATTAGAATCATTTTGCGTTTTGGCAGAATTTCGATTTG AGTTTCCTGAAAAATATTATTCATTTAATTAGGACTCGCGATGCGAAAAA AAAAGTAAGTCTTCGTCACCACCGACTTATTAAATATAAATATAACTGTC ATTACAAAGTTCCACCAAATGGGGCGCATCGGCAGTGCCGCTGTCACAGT GCATAGATTGAGCACCACACACACCAGCCGCAAGGCTCACCATACCCATT GGTGTTGTCGGCGTATTTACAGCAGCAGCAACCTGCAGCAGCACCAACAC CAACCCACGGGTGCGGTGGCGTAGGTCGAATCGCAAGCGCTGGGACGGAG CTCTGTCGAGATAGGGCACCAAAAACGCGTTCAACCGTAATCGTAACGTT TCCTTCGGCTGGCTTGATTAGCAGAGGGTGTCAGACATGTTTATTGTGTG AGCTCTGCCGCAAACCCAGCAGCAGCAGCGTGTGTGTATGTCGGTCGGTG GCAGCAGCTGCGTGCGTGCGTGTTCGGTGCATCGTCAGTCGGTTTGAATG AGGATAACACAACTACCGCCTGCCACTACACCATGTCGTCTCCATGGCCT TCTAAAACAATACACAAACCGTAACCCACGTCCCCGTGTTGCTTCGCTCG GTGCGTATCGGCCGATGGCGGTTTGAATGGTGTCAGGAATTTTGTATTTT ACAGCTTTGAGTGCCGACACGGCCTAGCTTGGAAGCTTCAAGAGGATTCA TTAAATAAATAATTATAAACGTTTAAAGCGTGCCATGTATGTCGGGTTCA TGCGGGGTTTGGAAACATATTACAAGGGATCCGTAGAAGTACAAAAAACG TGTTTCGTCGCAGTTGTGGTGCCGCTCGGGTGACGCCGCTCTCATCATTA AGATATATTAAAGGGCCTAAAATCAATGTTTTTTTCGAGAACCCTTGATT CACCCGACATTTCCCAGTATGCTGACAGTGCCTCACTCCCGCCCATATTG TGCTTGCTTGTACCGCTTATGTACAACAAAAGGTTCGCCGAGGCGTGCAA GCTGCGTGATATTTTTACGCGGCTATAGCAGGCAGAGGCTTTCCGTGACT CCTACAGCACCCTTCCTGTCATCACCACCACTCTAAGGAACCTCGGAAAC TTCGAGAGCATTTTCCAGGGAACCGGGGTGGTGTCCCGCCTTCCGAAAAT CACGAAGGCGCGGGCATTCCAGCTGCTCAGGCAGGGGACACAGCAGGTCG CCGTGGGCATGAAGGAATACATGCACCACGAAGACTTCACGGGCATGGAC AAGGATGGTTCGTTCACCCGTTCTTTGTCGGTGGGATCCCCAAAGTCGAG GATGCGGAGCCGTTCACCCTGAAGACGGTCGACGAAGACGCCATCACCAA AGTGATTCAGCGTTTCGAGTGCTTACACCCGAGAGTCGAGGCGCTCTACC CCGGTGAGTACCTTGCGACTCTCTCTCCGTTTTCCCCCCGACGATATTTT TTTTTTATCTCAACACTAGCCCTGTGGGGAAAATAGTGTGTCCGAGGAGG GGGTGGGGGAGGATCTCCCAAGGATATTAGGAGGTTTTGTTTTTTTCTGG TACATATACTCGCGGGGTGAAGCCCGAAACAATAAATAATATACACACCA CACAAACGCATACAGGCAGAATACCTGCGCTGCATTTCAGCGGTAAACAA CACACCATCGAACAACGCGAACAAACACACACAACATCGACGGCAGATGG TGAGCAACTTCATTCTACACCATCATGGCAAATGCCCACGTACAAGTGCC CAATAAATTAAAAGCGCCTTGTTCGGCTCCAAGAGACGGCGCTTTTCACT CCCGTAGCGATGCCGAAAGCGTAGTAAACATCGCGTGCAAATATCACGCG TTAAGCACGTTGTTTTGCCGCCGGCGGGGGATACGTTTTTGTTTCAAAAA CGCAACCCCCGGGGCCAAAGAGTCTCCGGGAGGGATTTGTTTTTGTCGGA CATTACCGCGAGGGGGAATCTCCCCGGGGGATTAGCCCACAAAACACAAA TGCACGCACAGCAACGTCACTCACAGCAGTCCTGAGTACCGCTATCTCCC ATCCCTATTTAAACCCACGATGGGCAAAGGGTTTTGCGGTAACCACGGGG GGGTACCCATCGACAAACGTATTACGCCGGGAGGAAATTGTGTCCAGGGG GACGAAATTTCTTTCAGTTTTTTTTTTCCTCTTGGGGAAAAATAAGTTTC GATGATTTCCGGCCGGACAAAAGTGTGTAAGGGGGGGGGGGAGGGTTTTA CTGTATTTTCCACTGCACAAGACAAACGCACGGATACGGTTAACACATAA TCGTGAACATTTTGGGAGGGGCAGAGATAGATGAAGAAAATCAAAATCGA AAACCGTCTTGTAAGACCGGTTTGGGGTTCGATTCGTCTACTGCGTTGCC GGCACTGTTCTGTACTGCGAAATGTTGATACTGAAACTGCCATTTCCATT GACGATATCCTTTTCCATTCTACCCTTCCTTGCGCTCAAAATCTACGCTG TTTGCCGCTGTTATTGGACCACCTTATCGTCTCAAAGACAAGGATCAGCA GGCAGACATCAAGAACGAGATGGCTAGGTCCGCGTCTCTCTTGAGTGCAC AAGGGGAAAGGGAGTGGGATCTTCCAGTGGACTGGTTGGATGAAGGCGAC AGCGACGATTCAAGTAGCTCGGACTCGGACTCCGAACCAACGCAGAATGA TGACCTCAACGGCTCCGGCAGCTCGGACGACGACTTCAGCGACGACAAGA GCAAAGACGACGATGATCCGAGCGATGACGAGGGCGACAACGTGGGGGCG GGCGGGATGATACCTGGACCTGGGGGTGAAGTCGTGGCACAGGGTGGTGG GGACATCGAAGAGGGCAGTGGGGACAAAAGTGACAGGTTGGCTCGGTTGG AAGAGATGGTTGGCCGTTTCGCATTTTTCTTGGCCGAGGGTAGCCCATTT CTAGTCTTCAAGGCTAAGCAGGTTGAAGAGCGTGAGGGTGAGATGGGTTT CGTAGGTCAGTGGTGGACACCCGCCAACAGCTCGCTGAGGGCAGCAGCCG ACACTGTCCCATTCGAGGACTACTGTAACACTAGGGTGACGTTTACCCCG GACTACGTCATGAAACCTTCTGTTTACGGAGGGCGCCCTACGCGCGCACC CGACCTGGGCTGGGAGAGGGCGGACAGGGTCGTTGTCTGGTCCAAAAACA AAGAGCTCAACGGGAAGGGGAAGAAAATTCCAAAATTCGCCGTTGATGCC GTCACCCTTGCCTTCCAAAAACGTAAAAAGGGGAGGGAGGAAAAACAACC AAGAGATGAGGGCAGGGAAGACGAGAGCAGGGAGGGGGAACCCCAGATAG AGCGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:305553..313909+

>mRNA_P-littoralis_Contig116.88.2 ID=mRNA_P-littoralis_Contig116.88.2|Name=mRNA_P-littoralis_Contig116.88.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1023bp|location=Sequence derived from alignment at P-littoralis_Contig116:305553..313909+ (Pylaiella littoralis U1_48)
ATGGTACTTCGAAGTTTATTTTTAAGAGCCCACCAACCACTAATTATTTC
TATATGTTTTTCCACGGGTTTCCGACTTCCCCTCTACAACGCTAAGAGAG
AGCGCTCGGGGACGGGGAGCGATCAGAAGCGACAGGTCCTGGGCTTTTTG
GACTCCTACGCCAACACCTTTGGTCAGCACATGCCACACAAGCGAGCCAC
ACACCTGTACCTCATGTGCAAGAAGGAGCTTTACCGCACCTTCAGCAAGT
CGCGCCTGGAAGACGGAGAGGCCGGCATCATCAGCTACCCGTACTTCGTG
AAGGTCTGGCGCGAAAATCGGCCTCAACTTAAAGCCAAGAGCGGCACCGA
GTTCATGAAGTGCTACGACTGCACGCAGCACAAGGCAGTGCTATTCGGAA
TGCCGGGGATTCGGGCGACTATAGACGAAGCGGCACGCCAAGTCGCCCAG
GTCAAGTACGACGCGCACCTCAAGATCGTCGAGCTCGACCGCGAGGTCAT
GGACAACAATTCTCGCAGGGCAAAGGCCGCCCAACTCGCGCTCACTCCCT
TGGCGTTCGTCGTGATGCAAGCGGATGCCGCCGCGCAGTCGGCCTTTGCT
CTCCCGATGCAGTCGACCATGACACATGGCACAGACAGGGGCTGGTCCGA
ACGCCAGAAAATCATGGCCATCCTCGTGGTGGGCATTTTTGTCAAGGTGT
TCCTCACGCCGCAAACTCTTGGAGGAGGCAGTAACCTGGTCTGCACCGCC
ATCCACCTTGCCCTCTGCCGCCTTTTCGACGACCACGCCGTTAACGGCAC
GGAACCCTTCATCGGGACTCTTGTCGTGCAAGTGGACAACTGTGTGGGCG
AGAACAAAAATCATGTGCTGGTGGGCTACCTCGCGTCGCTCGTCGGGCGA
GGTGTGATTGGCAACGTGGAGATCCAGTTCATGCCGATTGGCCACACTCA
CATCCTGATCGACCAGGTCTTTTCTAAGTTCGCCGAGGCGTGCAAGCTGC
GTGATATTTTTACGCGGCTATAG
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