mRNA_P-littoralis_Contig619.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig619.50.1
Unique NamemRNA_P-littoralis_Contig619.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig619.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig619contigP-littoralis_Contig619:171204..172161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size958
Hectar predicted targeting categoryother localisation
Exons1
Cds size843
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791287.3336194-UTR-P-littoralis_Contig619:171203..1713001680791287.3336194-UTR-P-littoralis_Contig619:171203..171300Pylaiella littoralis U1_48UTRP-littoralis_Contig619 171204..171300 +
1680791287.3576853-UTR-P-littoralis_Contig619:172143..1721611680791287.3576853-UTR-P-littoralis_Contig619:172143..172161Pylaiella littoralis U1_48UTRP-littoralis_Contig619 172144..172161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791287.347921-CDS-P-littoralis_Contig619:171300..1721431680791287.347921-CDS-P-littoralis_Contig619:171300..172143Pylaiella littoralis U1_48CDSP-littoralis_Contig619 171301..172143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig619.50.1prot_P-littoralis_Contig619.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig619 171301..172143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig619.50.1

>prot_P-littoralis_Contig619.50.1 ID=prot_P-littoralis_Contig619.50.1|Name=mRNA_P-littoralis_Contig619.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=281bp
MRGYYGTNIRTLLSPNEQEIFFQRIESENEDRPRAQPESCAVSQEDVAAM
PTADEPDLTQESCVSCAVVPELTAGDGAQFAVESPTAEVQRSTAVVVESQ
LREPVAQQSFVPVQPDSSSEDCSEAGIDNSIDGSSDDRSEDRSEDRSDEC
SGDSSGDRSEGSGEGSSSNGSIYKGSDVTWRGAPTHPFDPVQSPSRSSSS
SSDDGGGYSSDTGMDATCRGEPTSPFDRNVEKGELVLGVAHPFDRGKTFV
CPARKLMDFALKGRPFGSSSNNNNKPSARV*
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mRNA from alignment at P-littoralis_Contig619:171204..172161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig619.50.1 ID=mRNA_P-littoralis_Contig619.50.1|Name=mRNA_P-littoralis_Contig619.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=958bp|location=Sequence derived from alignment at P-littoralis_Contig619:171204..172161+ (Pylaiella littoralis U1_48)
GTTGCTTCGCCAATACCGTGTTTGGATGAGAGATGCTTCTGCTTCATTCG
AATGGGAAGGTGCATGGGCACTTGACTACAAGGGGGACTGACGCCAGATG
CGCGGGTATTATGGTACGAATATCCGAACGCTGTTGTCTCCTAACGAGCA
AGAGATTTTTTTTCAGAGGATAGAGTCGGAGAACGAAGACCGACCGCGTG
CACAGCCGGAATCATGCGCAGTGAGTCAAGAGGATGTAGCAGCGATGCCC
ACAGCGGACGAACCTGACCTGACTCAGGAAAGTTGTGTTTCGTGTGCGGT
GGTCCCGGAGCTCACGGCCGGGGACGGAGCACAATTCGCGGTGGAATCGC
CGACGGCGGAAGTGCAACGATCAACGGCAGTGGTAGTGGAGTCGCAGTTA
AGGGAACCGGTTGCCCAGCAGTCGTTTGTGCCGGTTCAACCAGACAGCAG
CAGTGAAGATTGCAGCGAAGCCGGCATTGACAACAGCATCGACGGTAGCA
GCGACGACCGCAGCGAAGACAGGAGCGAAGACAGAAGTGACGAGTGCAGC
GGAGACAGCAGTGGAGACCGCAGCGAAGGTAGCGGCGAAGGCAGCAGCAG
CAACGGCAGCATCTATAAGGGATCGGATGTTACCTGGAGGGGAGCGCCGA
CGCACCCTTTCGACCCCGTGCAGAGTCCTTCGCGCAGCAGCAGCAGCAGC
AGCGATGACGGCGGTGGTTACAGCAGCGATACGGGGATGGATGCTACCTG
CCGGGGAGAGCCGACAAGCCCTTTCGACCGCAACGTCGAGAAAGGGGAGT
TGGTGCTGGGCGTGGCCCACCCATTTGACCGCGGGAAGACTTTCGTGTGC
CCAGCGCGGAAGCTGATGGACTTTGCGCTGAAGGGGCGGCCATTTGGTTC
GAGCAGCAACAACAACAACAAGCCGTCAGCTAGGGTTTGAAACCCGTCCA
GGCATGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig619:171204..172161+

>mRNA_P-littoralis_Contig619.50.1 ID=mRNA_P-littoralis_Contig619.50.1|Name=mRNA_P-littoralis_Contig619.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=843bp|location=Sequence derived from alignment at P-littoralis_Contig619:171204..172161+ (Pylaiella littoralis U1_48)
ATGCGCGGGTATTATGGTACGAATATCCGAACGCTGTTGTCTCCTAACGA
GCAAGAGATTTTTTTTCAGAGGATAGAGTCGGAGAACGAAGACCGACCGC
GTGCACAGCCGGAATCATGCGCAGTGAGTCAAGAGGATGTAGCAGCGATG
CCCACAGCGGACGAACCTGACCTGACTCAGGAAAGTTGTGTTTCGTGTGC
GGTGGTCCCGGAGCTCACGGCCGGGGACGGAGCACAATTCGCGGTGGAAT
CGCCGACGGCGGAAGTGCAACGATCAACGGCAGTGGTAGTGGAGTCGCAG
TTAAGGGAACCGGTTGCCCAGCAGTCGTTTGTGCCGGTTCAACCAGACAG
CAGCAGTGAAGATTGCAGCGAAGCCGGCATTGACAACAGCATCGACGGTA
GCAGCGACGACCGCAGCGAAGACAGGAGCGAAGACAGAAGTGACGAGTGC
AGCGGAGACAGCAGTGGAGACCGCAGCGAAGGTAGCGGCGAAGGCAGCAG
CAGCAACGGCAGCATCTATAAGGGATCGGATGTTACCTGGAGGGGAGCGC
CGACGCACCCTTTCGACCCCGTGCAGAGTCCTTCGCGCAGCAGCAGCAGC
AGCAGCGATGACGGCGGTGGTTACAGCAGCGATACGGGGATGGATGCTAC
CTGCCGGGGAGAGCCGACAAGCCCTTTCGACCGCAACGTCGAGAAAGGGG
AGTTGGTGCTGGGCGTGGCCCACCCATTTGACCGCGGGAAGACTTTCGTG
TGCCCAGCGCGGAAGCTGATGGACTTTGCGCTGAAGGGGCGGCCATTTGG
TTCGAGCAGCAACAACAACAACAAGCCGTCAGCTAGGGTTTGA
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