mRNA_P-littoralis_Contig116.88.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE) HSP 1 Score: 263 bits (673), Expect = 3.000e-73 Identity = 157/381 (41.21%), Postives = 224/381 (58.79%), Query Frame = 2
Query: 242 MPHKRATHLYLMCKKELYRTF---SKSRLEDGEAGIISYPYFVKVWRENRPQLKAKSGTEFMKCYDCTQHKAVLFGMPGIRATIDEAARQVAQVKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFALPMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVV----QVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQGTQQVAVGMKEYMHHEDFTGMDKDGSFT-----RSLSVGSP 1348
MPHK + K+ELY+ F +K + + +S +F ++ R++RP ++ + G EFMKC C K G PG++ ++D +A AH ++V+ DR V+ N + A A+ PL FV M DAA ++ ALP THG DRG+SERQKIMA+ + G FV+V+ TPQ LGGG NL CTA HLA+ R+ D + + P G ++ QVDNCV ENKN+ +GY LV V+ VEI FM +GHTH IDQVFS+F+ K ++IFTR AE R SY+ +PV +TLRN GNF+ + G V+R+P IT RAF++ + G +V V +K++MH ++ G+ +DG+ L +GSP
Sbjct: 1 MPHKDHVVICSSNKEELYQDFLTEAKRVYPEDTSKRVSKAHFFRIPRKDRPHIRVRVGGEFMKCDICVTLKERRHGSPGVKPSLDSSALASIDRDLAAHRQMVQADRLVIANRTGDAMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPS-GCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGR--VNRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDALPHDLFIGSP 378
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE) HSP 1 Score: 259 bits (663), Expect = 8.310e-72 Identity = 161/381 (42.26%), Postives = 219/381 (57.48%), Query Frame = 2
Query: 197 VLGFLDSYANTFGQHMPHKRATHLYLMCKKELYRTFSKSRLE-------DGEAGIISYPYFVKVWRENRPQLKAKSGTEFMKCYDCTQHKAVLFGMPGIRATIDEAARQVAQVKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFALPMQSTMTHGTD-RGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQGTQQVAVGMKEYMHHEDFTGMDKDG 1315
V+ FL + + +GQ MP+ ++LYL K ELY +SK+ E + S YF +VW + LK K +FM C CT K + G G R +DEA R+ Q Y HL+ VE DR +A A+ TP V +Q DAA QS FA P+ ++ HG D RG++ERQKI LV GI ++VF+ PQ LG GSN+VCT L LF + + +G + +Q+DN V ENKN+ ++G+LA+LVGRGV+ +V + FM +GHTHI IDQVFS FA + K +FTR AE F +Y TLPV TL NL NF+ + Q V R+P ITK +AF + ++GT VA +K +HH+D+ G DG
Sbjct: 254 VVAFLHRHEDMYGQKMPNSDQSYLYLKSKLELYEEYSKNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQDVERDRMYGARLENQAAVAKSNGTPWETVYLQVDAANQSNFATPIGASQAHGVDDRGYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTT----LFTLFMELTLQWKHS-LGDVFIQMDNTVSENKNNFIMGFLAALVGRGVMRSVTLCFMMVGHTHIQIDQVFSCFARSVKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQP--VTRRIPNITKFQAFNISKEGTAIVAK-VKTKLHHDDWLGFSADG 626
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 213 bits (542), Expect = 1.320e-56 Identity = 132/306 (43.14%), Postives = 174/306 (56.86%), Query Frame = 2
Query: 416 MKCYDCTQHKAVLFGMPGIRATIDEAARQVAQVKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFALPMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEP----FIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
MKC DCT+ K L G PGIR + R H IV DRE++ + A+ Q TPL V +Q D A Q +AL TH G+SERQK+MA+ G FV V PQT GGGSNLVCTA+ LAL RL + GT+P +I L +Q+DNCVGENKN++++ ++ LV GVIG+ E+ F+ +GHTHI IDQVFS+F+ R IFTR E FR+SY LPV TL NLGNF+ ++ ++ L KI F+ R G +V+V K +MH + + G+ G
Sbjct: 1 MKCSDCTEIKEKLHGAPGIRPIQNTRQRAEIVRHQKEHHHIVSKDRELLTSRMEAARREQANGTPLNQVTIQQDCACQIRYALGTVHPQTHA---GFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRL----SAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLN-LRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATG 298
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE) HSP 1 Score: 171 bits (434), Expect = 4.800e-42 Identity = 127/369 (34.42%), Postives = 180/369 (48.78%), Query Frame = 2
Query: 266 LYLMCKKELYRTFSK-SRLEDGEAGI-ISYPYFVKVWRENRPQLKAKSGTEFMKCYDCTQHKAVLFGMPGIRATIDEAARQVAQVKYDAHLKIVELDREVMDNNSRRAKAAQLALTPLAFVVMQADAAAQSAFALPMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVD---------------NCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVS--RLPKITKARAFQLLRQGTQQVAVGMKEYMHHEDFTGMDKDG 1315
+Y +E+Y F++ +R GE S PYF ++WRE RP +K +FMKC DCT+ L G PGIR D R H IV DRE++ ++ AK Q TPL V +Q D A Q +AL TH SERQ++ + P+ G A + R + V+G T V VD NCVGENKN++++ ++ LV GVIG+ E+ F+ +GHTHI IDQVFS+F+ R IFTR E FR+SY LPV TL NLGNF+ ++ ++ R+ +TK AF++ + + V+V K +MH + + G+ G
Sbjct: 1 MYHTFLQEMYARFAEHTRHVHGEVDSGFSRPYFNQIWREERPLIKLARFGDFMKCSDCTEINEKLHGAPGIRPIQDTRQRAEIVRHQKEHHHIVSKDRELLTSHMEAAKREQANGTPLNQVTIQQDCACQIRYALGTVHPQTHA-----SERQRLFGA------AEGHGRPRRRGVRGRPFRPADN----RWREQPGVHGAVVGPQTTVCNVDQAWPEVLHQASPPSDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRRIRNVTKFWAFRVGKVAGE-VSVWAKRFMHSDAWLGLTATG 353
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE) HSP 1 Score: 162 bits (409), Expect = 2.580e-38 Identity = 93/219 (42.47%), Postives = 128/219 (58.45%), Query Frame = 2
Query: 665 PMQSTMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQTLGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
P ++T+ G SERQK+MA+ G FV V PQT GGGSNLVCTA+ LAL RL + G I L +Q+DNCVGENKN++++ ++ LV GVIG+ E+ F+ +GHTH DQVFS+ + R IFTR+ E FR+SY LPV T NLGNF+ ++ + L KI F+ R G +V+V + +MH + + G+ G
Sbjct: 196 PSRTTVRVYDFSGLSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSRLSVGTLGRSIFTRIQLGELFRESYRELPVRIGTPTNLGNFKGLYLAD-IKLNLRKIRNMTTFRAFRVGKIAGEVSVWVDRFMHSDAWLGLTATG 413
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.120e-32 Identity = 78/178 (43.82%), Postives = 107/178 (60.11%), Query Frame = 2
Query: 788 GSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
GSNLVCTA+ LAL RL G +I L +Q+DNCVGENKN++++ ++ LV GVIG+ E+ F+ +GHTHI IDQVFS+F+ R IFTR E FR+SY LPV TL NLGNF+ ++ ++ L KI F+ R G +V+V K +MH + + + G
Sbjct: 10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLN-LRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLDLTATG 186
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.100e-28 Identity = 83/222 (37.39%), Postives = 123/222 (55.41%), Query Frame = 2
Query: 677 TMTHGTDRGWSERQKIMAILVVGIFVKVFLTPQT-------LGGGSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
T + +G S+ + ++G+ ++ + PQT L GGSNLVCTA+ LAL RL A G +I L +Q+ NCVGE KN++++ ++ LV GV+ + E+ F+ +GHT I ID VFS+F+ R IFTR E FR+SY LPV TL NLGNF+ ++ ++ L KI F+ R G +V+V K +MH + + G+ G
Sbjct: 240 TTLYTATKGVSKSCFFTVVSLLGVGGRIPIAPQTAACVPALLCGGSNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLN-LRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATG 460
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.780e-28 Identity = 79/203 (38.92%), Postives = 107/203 (52.71%), Query Frame = 2
Query: 788 GSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVS-------------------------RLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
GSNLVCTA+ LAL RL G +I L +Q+DNCVGENKN++++ ++ LV GVIG+ E+ F+ +GHTHI IDQVFS+F+ R IFTR E FR+SY LPV TL NLGNF+ ++ + L KI F+ R G +V+V K +MH + + G+ G
Sbjct: 10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLXLPLKPTXXXXXXXXXXXXXXXXXXXNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATG 212
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE) HSP 1 Score: 123 bits (309), Expect = 2.820e-26 Identity = 72/178 (40.45%), Postives = 101/178 (56.74%), Query Frame = 2
Query: 788 GSNLVCTAIHLALCRLFDDHAVNGTEPFIGTLVVQVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQG--TQQVAVGMKEYMHHEDFTGMDKDG 1315
GSNL CT + LAL RL G I +Q+DNCVGENKN++++ ++ LV GVIG E+ F+ +GHTHI IDQVFS+ R IFT++ E FR+SY LPV L NLGN + ++ ++ L KI F+ R G +V+V +K +MH + + G+ G
Sbjct: 10 GSNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYKELPVHVGILTNLGNLKGLYLADNKLN-LRKIRNIATFRAFRVGKVAGEVSVWVKRFMHSDAWLGLTATG 186
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.200e-25 Identity = 64/142 (45.07%), Postives = 91/142 (64.08%), Query Frame = 2
Query: 890 QVDNCVGENKNHVLVGYLASLVGRGVIGNVEIQFMPIGHTHILIDQVFSKFAEACKLRDIFTRL*QAEAFRDSYSTLPVITTTLRNLGNFESIFQGTGVVSRLPKITKARAFQLLRQGTQQVAVGMKEYMHHEDFTGMDKDG 1315
QVDNC ENKN+ +G+ LV VI VEI FM +GHTH+ IDQ+FS+F+ K ++IFTR AE + SY+ +PV +TL N GNF + QG V+R+P IT RAF++ + G +V V +K +MH + G+ ++G
Sbjct: 20 QVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGR--VNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNG 159 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.88.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig116.88.2 >prot_P-littoralis_Contig116.88.2 ID=prot_P-littoralis_Contig116.88.2|Name=mRNA_P-littoralis_Contig116.88.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=341bp MVLRSLFLRAHQPLIISICFSTGFRLPLYNAKRERSGTGSDQKRQVLGFLback to top mRNA from alignment at P-littoralis_Contig116:305553..313909+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig116.88.2 ID=mRNA_P-littoralis_Contig116.88.2|Name=mRNA_P-littoralis_Contig116.88.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8357bp|location=Sequence derived from alignment at P-littoralis_Contig116:305553..313909+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig116:305553..313909+ >mRNA_P-littoralis_Contig116.88.2 ID=mRNA_P-littoralis_Contig116.88.2|Name=mRNA_P-littoralis_Contig116.88.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1023bp|location=Sequence derived from alignment at P-littoralis_Contig116:305553..313909+ (Pylaiella littoralis U1_48)back to top |