mRNA_P-littoralis_Contig619.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig619.11.1
Unique NamemRNA_P-littoralis_Contig619.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig619.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig619contigP-littoralis_Contig619:43848..44470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size281
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791287.0748625-UTR-P-littoralis_Contig619:43847..439031680791287.0748625-UTR-P-littoralis_Contig619:43847..43903Pylaiella littoralis U1_48UTRP-littoralis_Contig619 43848..43903 -
1680791287.1179826-UTR-P-littoralis_Contig619:44386..444701680791287.1179826-UTR-P-littoralis_Contig619:44386..44470Pylaiella littoralis U1_48UTRP-littoralis_Contig619 44387..44470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791287.0886986-CDS-P-littoralis_Contig619:43903..439081680791287.0886986-CDS-P-littoralis_Contig619:43903..43908Pylaiella littoralis U1_48CDSP-littoralis_Contig619 43904..43908 -
1680791287.1053503-CDS-P-littoralis_Contig619:44250..443861680791287.1053503-CDS-P-littoralis_Contig619:44250..44386Pylaiella littoralis U1_48CDSP-littoralis_Contig619 44251..44386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig619.11.1prot_P-littoralis_Contig619.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig619 43904..44386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig619.11.1

>prot_P-littoralis_Contig619.11.1 ID=prot_P-littoralis_Contig619.11.1|Name=mRNA_P-littoralis_Contig619.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=47bp
MRVFTRDMIPGLRFPRPRTSASDIRDRVAPLGFELTSWVSEVFQEG*
back to top

mRNA from alignment at P-littoralis_Contig619:43848..44470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig619.11.1 ID=mRNA_P-littoralis_Contig619.11.1|Name=mRNA_P-littoralis_Contig619.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=623bp|location=Sequence derived from alignment at P-littoralis_Contig619:43848..44470- (Pylaiella littoralis U1_48)
CTTATCTTTTTTGCCTTTCAGCTTTCTATACATAGCAAGAAGGATTCAAC
CAGTCGCCTTTATCCTCGTCAACTACTGAGTCAAATGCGTGTGTTTACTC
GCGACATGATACCTGGTTTGCGTTTTCCACGCCCGCGAACGTCTGCGAGC
GATATCCGAGATCGTGTGGCTCCACTAGGATTTGAACTCACGTCCTGGGT
GTCAGAAGTGTTCCAGGAAGGTGAAAAAAAAAAACTCCCGTCGTAACCTT
CCTCCTGTTTGACCACGGTTGGTGCGCCCAACTTACACCGAAAGATGTAA
ATGGACGTCAAGGATAAATGGAATGACACCACACGCACACACACACACGT
AGACTGCCGTGTAGCACTTGCTTGCCGCTCCATTTCATTGCCATCGTGAC
AACAGTGGGTTCCCTACTCATGTGCCGCCACTCCTACACACCTTTCACAA
TTTTGCAGCTCGATCGCATGCTCACAGCGACGTCTTGATGTTGAACCTCG
TAGCTCTTTGGGCTATTATTGCTAACCCCACTTCTCCGCGGCTGCCGAAC
AAATGTGGCCAGGATAAAAACACACCGGAGCAACGAGATGAGGCAACCAA
TGTCTTCCGGCTGGTCACAGAGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig619:43848..44470-

>mRNA_P-littoralis_Contig619.11.1 ID=mRNA_P-littoralis_Contig619.11.1|Name=mRNA_P-littoralis_Contig619.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=141bp|location=Sequence derived from alignment at P-littoralis_Contig619:43848..44470- (Pylaiella littoralis U1_48)
ATGCGTGTGTTTACTCGCGACATGATACCTGGTTTGCGTTTTCCACGCCC
GCGAACGTCTGCGAGCGATATCCGAGATCGTGTGGCTCCACTAGGATTTG
AACTCACGTCCTGGGTGTCAGAAGTGTTCCAGGAAGGATAA
back to top