mRNA_P-littoralis_Contig618.39.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Match: D7FTK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK0_ECTSI) HSP 1 Score: 199 bits (505), Expect = 1.400e-57 Identity = 125/259 (48.26%), Postives = 158/259 (61.00%), Query Frame = 1
Query: 10 TVNGWIFHAARAPNETQFENIMEINVKPFKPAAYDALM----AFDRKRWAHHAGPADTVIGDQTSSNPVEQNMSMIGAEARKLTPYGLAIAILEKTAQKMAERAELRIGRADRLTPFAAQQFAAQQTQRVPARPVHRERQFHRPQSRPKLRQ*SETGVQDRRNRHRHDLHMRLHHSDGVLALVDSAYHLATYRAVYADERFEVQLPVSEELVVDTTMLPPSQVEGRAGRPAR-GPAQSKRFRGRGDKNASSSFNVRVTP 771
T N W ARAP T+F +IM+ VKP KP AY AL+ + +W HHAGP+DT IG SN EQNM+M+G + RKL P +A IL+KTA +M E AEL + R TP+AA + PA P H ERQ Q+R +LRQ S GV+DR R D H L SD ++ +D AYHL TYRA+YAD RFEVQLPV +EL VD +LPP+ V +AGRP + GP+ KR RG+ +S+S NVR+ P
Sbjct: 88 TSNSW---TARAPTRTKFMDIMDAKVKPTKPKAYAALLDPKKPHELVKWTHHAGPSDTAIGSVVPSNAAEQNMAMVGLQGRKLPP--MAQHILDKTASQMTEGAELCNSTSQRFTPYAATSSRLSAGIQQPAFPRHLERQLDCSQTRQQLRQPSGAGVRDR---WRGDSHDSLDKSDEAMSSIDPAYHLDTYRALYADSRFEVQLPVPDELTVDVDILPPAWVPNQAGRPKKKGPSMMKRIPSRGEHASSTSDNVRLMP 338
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE) HSP 1 Score: 201 bits (510), Expect = 2.380e-57 Identity = 132/316 (41.77%), Postives = 173/316 (54.75%), Query Frame = 1
Query: 1 PPQTVNGWIFHAARAPNETQFENIMEINVKPFKPAAYDALMAFDRK------------RWAHHAGPADTVIGDQTSSNPVEQNMSMIGAEARKLTPYGLAIAILEKTAQKMAERAELRIGRADRLTPFAAQQFAAQQTQRVPARPVHRERQFHRPQSRPKLRQ*SETG-----VQDRRNRHRHDLHMR----------------------------------LHHSDGVLALVDSAYHLATYRAVYADERFEVQLPVSEELVVDTTMLPPSQVEGRAGRP-ARGPAQSKRFRGRGDKNASSSFNVRVTPTSSTTAP 792
P V G+++HAARAP +F +IM+ NVKPFKP YDAL+A K +W HHAGP DT IG SSN EQNM+M+G E RKL P+G+ IL+KTA MAERAELR G +++ TP AA+++ AQ R + +H S TG V+ R +++ + + + L+ SD V+A +D AYHL TYRA+Y D RFEVQLPV +EL VD +LPP V +AGRP +GP +KR RG+ +SSS+NVR+TPT ST AP
Sbjct: 90 PGSIVTGFLYHAARAPTLKKFMDIMDSNVKPFKPKVYDALVAPADKHGNPSKQQSELVKWTHHAGPPDTAIGSVVSSNAAEQNMAMVGLEGRKLPPFGMMEYILDKTAAHMAERAELRDGTSEKFTPHAAKEYGAQ---RKKSSNLHS----------------SATGNCNFTVRKRGSQYGNRVRLEFGGTDGGVTLMSCTCGFTTRFKIPCCDIIAVGRVLNKSDEVMASIDPAYHLDTYRALYGDSRFEVQLPVLDELTVDPDILPPRWVPNQAGRPKGKGPQSTKRIPSRGEHASSSSYNVRLTPTPSTRAP 386
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Match: A0A6H5KEB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB7_9PHAE) HSP 1 Score: 187 bits (474), Expect = 5.410e-53 Identity = 124/281 (44.13%), Postives = 161/281 (57.30%), Query Frame = 1
Query: 10 TVNGWIFHAARAPNETQFENIMEINVKPFKPAAYDALMAFDRK----RWAHHAGPADTVIGDQTSSNPVEQNMSMIGAEARKLTPYGLAIAILEKTAQKMAERAELRIGRADRLTPFAAQQFAAQQTQRVPARPVHRERQFHRPQSRPKL------RQ*SETGVQDRRNRHRHD----------------LHMRLHHSDGVLALVDSAYHLATYRAVYADERFEVQLPVSEELVVDTTMLPPSQVEGRAGRPAR-GPAQSKRFRGRGDKNASSSFNVRVTP 771
TV W++HAARAP T+F +IM+ VKP KP AY AL+ ++ RW HHAGP DT IG SS+ EQNM+M+G + RKL PY +A IL KTA +MAERAEL + R TPFAA++F AQ R + +H + + KL R E G R + L SD V++ +D AYHL TYRA+YAD RFEVQLPV +EL VD +LPP V +AGRP + GP+++K RG+ +SSS+NVR+ P
Sbjct: 13 TVTHWLYHAARAPTRTKFMDIMDTKVKPTKPKAYAALLDSNKPHELVRWTHHAGPTDTAIGGVVSSDAAEQNMAMVGLQERKLPPYNMAQHILGKTASQMAERAELVNSASQRFTPFAAKEFEAQ---RAKSGNLHSSATGNGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGYTTGFKIPCSDIVAVGRALDKSDEVMSSIDPAYHLDTYRALYADSRFEVQLPVPDELAVDVDILPPPWVPNQAGRPKKKGPSRTKGIPSRGEHASSSSYNVRLMP 290
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE) HSP 1 Score: 167 bits (422), Expect = 1.590e-44 Identity = 119/285 (41.75%), Postives = 157/285 (55.09%), Query Frame = 1
Query: 1 PPQTVNGWIFHAARAPNETQFENIMEINVKPFKPAAYDALMAFDRK----RWAHHAGPADTVIGDQTSSNPVEQNMSMIGAE-ARKLTPYGLAIAILEKTAQKMAERAELRIGRADRLTPFAAQQFAAQQTQRVPARPVHRERQFHRPQSRPKL-------------------RQ*SETGVQDRRNRHRHDL---HMRLHHSDGVLALVDSAYHLATYRAVYADERFEVQLPVSEELVVDTTMLPPSQVEGRAGRPAR-GPAQSKRFRGRGDKNASSSFNVRVTP 771
P QTV W++HAARAP T+F M+ VKP KP AY AL+ ++ +W HHAGP DT IG SSN EQNM M+G + ++ +A IL+KTA +MAERAEL + R TPFAA++F AQ R + +H + + KL R G R D+ L SD V++ +D AYHL TYRA+YA+ RFEV LPV +EL VD +LPP V +AGRP + GP+++KR RG+ SSS+NVR+ P
Sbjct: 90 PGQTVTHWLYHAARAPTRTKF---MDTKVKPTKPKAYAALLDPNKPHELVKWTHHAGPTDTAIGGVVSSNAAEQNMVMVGLQRGEEVAALHMAQHILDKTASRMAERAELVNSASQRFTPFAAKEFEAQ---RAKSSNLHSSATGNGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGYTTRFKIPCCDIIAVGRALDKSDEVMSSIDPAYHLDTYRALYAESRFEVHLPVPDELAVDVDILPPVWVPNQAGRPKKKGPSRTKRIPFRGEHAPSSSYNVRLMP 368
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE) HSP 1 Score: 114 bits (284), Expect = 4.380e-25 Identity = 64/129 (49.61%), Postives = 82/129 (63.57%), Query Frame = 1
Query: 1 PPQTVNGWIFHAARAPNETQFENIMEINVKPFKPAAYDALMAFDRK----RWAHHAGPADTVIGDQTSSNPVEQNMSMIGAE-ARKLTPYGLAIAILEKTAQKMAERAELRIGRADRLTPFAAQQFAAQ 372
P QTV W++HAARAP T+F M+ VKP KP AY AL+ ++ +W HHAGP DT IG SSN EQNM M+G + ++ +A IL+KTA +MAERAEL + R TPFAA++F AQ
Sbjct: 198 PGQTVTHWLYHAARAPTRTKF---MDTKVKPTKPKAYAALLDPNKPHELVKWTHHAGPTDTAIGGVVSSNAAEQNMVMVGLQRGEEVAALHMAQHILDKTASRMAERAELVNSASQRFTPFAAKEFEAQ 323
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Match: A0A6H5K5N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N8_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 6.170e-11 Identity = 46/96 (47.92%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 526 DGVLALVDSAYHLATYRAVYADERFEVQLPVSEELVVDTTMLPPSQVEGRAGRPAR--GPAQSKRFRGRGDKNASSSFNVRV-----TPTSSTTAP 792
D V+AL+ AY L +R Y D +++ LPV L D T+LPP V G+AG P GP + K GRGDKNASSSFN RV T + ST AP
Sbjct: 165 DVVMALMHPAYRLQYHRRTYGDNAYQIMLPVPSTLEEDDTLLPPFWVAGQAGAPKTKSGPKKYKMIPGRGDKNASSSFNRRVSELGPTASGSTAAP 260
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Match: A0A6H5JDY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY3_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 5.640e-9 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 571 YRAVYADERFEVQLPVSEELVVDTTMLPPSQVEGRAGRPAR-GPAQSKRFRGRGDKNASSSFNVRVT 768
+R YAD+ ++V LPV L D T+LPP V+G+AG P + GP + KR GRGDK ASSSFN RV+
Sbjct: 205 HRQTYADDAYQVMLPVPSTLEEDDTLLPPLPVDGQAGAPKKLGPKKFKRIAGRGDKYASSSFNTRVS 271
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Match: A0A6H5KCW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW3_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 4.280e-7 Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = 2
Query: 383 GFLHVLFTGNGNFTVRKAGQSYGNRVKLVFRTDGTDTVMTCTCAF 517
G LH TGNGNFTVRK G +YGNRV L F TDG T MTCTC +
Sbjct: 219 GNLHSSATGNGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGY 263 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig618.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig618.39.1 >prot_P-littoralis_Contig618.39.1 ID=prot_P-littoralis_Contig618.39.1|Name=mRNA_P-littoralis_Contig618.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp MEINVKPFKPAAYDALMAFDRKRWAHHAGPADTVIGDQTSSNPVEQNMSMback to top mRNA from alignment at P-littoralis_Contig618:155645..164367+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig618.39.1 ID=mRNA_P-littoralis_Contig618.39.1|Name=mRNA_P-littoralis_Contig618.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8723bp|location=Sequence derived from alignment at P-littoralis_Contig618:155645..164367+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig618:155645..164367+ >mRNA_P-littoralis_Contig618.39.1 ID=mRNA_P-littoralis_Contig618.39.1|Name=mRNA_P-littoralis_Contig618.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig618:155645..164367+ (Pylaiella littoralis U1_48)back to top |