mRNA_P-littoralis_Contig618.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig618.22.1
Unique NamemRNA_P-littoralis_Contig618.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: A0A0U2LTP8_9PHAE (ATP synthase subunit 9, mitochondrial n=153 Tax=Stramenopiles TaxID=33634 RepID=A0A0U2LTP8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.820e-13
Identity = 40/56 (71.43%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            ML+QAAK L A  A I LAGAGV I TVF ALV GT RNPSLKDEL R AI G AL
Sbjct:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFAALVLGTARNPSLKDELFRIAILGFAL 56
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BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: Q3S284_THAPS (ATP synthase subunit 9, mitochondrial n=16 Tax=Bacillariophyta TaxID=2836 RepID=Q3S284_THAPS)

HSP 1 Score: 67.0 bits (162), Expect = 3.680e-13
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            MLLQAAK + A  A I LAGAGV I TVFGALV G +RNPSLKDEL + AI G AL
Sbjct:    1 MLLQAAKFVGAGLATIGLAGAGVGIGTVFGALVIGVSRNPSLKDELFKLAILGFAL 56
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BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: A0A2U9GIF0_9STRA (ATP synthase subunit 9, mitochondrial n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2U9GIF0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.680e-13
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            MLLQAAK + A  A I LAGAGV I TVFGALV G +RNPSLKDE+ R AI G AL
Sbjct:    1 MLLQAAKCVGAGLATIGLAGAGVGIGTVFGALVIGISRNPSLKDEMFRMAILGFAL 56
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BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: D2Z269_HETAK (ATP synthase subunit 9, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z269_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-12
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            MLLQAAK + A  A I LAGAGV I TVF ALV GT+RNPS+KD+L R AI G AL
Sbjct:    1 MLLQAAKFVGAGLATIGLAGAGVGIGTVFSALVLGTSRNPSIKDDLFRFAILGFAL 56
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BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: A0A343A6X7_9STRA (ATP synthase subunit 9, mitochondrial n=5 Tax=Naviculales TaxID=38748 RepID=A0A343A6X7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.010e-12
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            M LQAAK + A  A I LAGAGV I TVFGALV G +RNPSLKDEL + AI G AL
Sbjct:    1 MELQAAKYIGAGLATIGLAGAGVGIGTVFGALVIGISRNPSLKDELFKMAILGFAL 56
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BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: Q6E768_SAPFE (ATP synthase subunit 9, mitochondrial n=4 Tax=Saprolegniaceae TaxID=4764 RepID=Q6E768_SAPFE)

HSP 1 Score: 62.8 bits (151), Expect = 1.730e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            MLLQAAK L A  A I LAGAGV I  VFG+L+ G +RNPSL+ EL+R AI G AL
Sbjct:    1 MLLQAAKFLGAGLATIGLAGAGVGIGNVFGSLILGISRNPSLQQELMRAAILGFAL 56
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BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: A0A8F0FD85_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD85_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.730e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            ML+QA+K L A  A I L GAGV I TVFGALV G +RNP+LKDEL + AI G AL
Sbjct:    1 MLVQASKILGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFAL 56
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BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: A0A455REF5_9EUKA (ATP synthase subunit 9, mitochondrial n=1 Tax=Marophrys sp. SRT127 TaxID=2488311 RepID=A0A455REF5_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 5.620e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            MLL+AAK++    AAI LAGAG  I TVFG+L+ G +RNPSL+ EL R AI G AL
Sbjct:   67 MLLEAAKKIGGGAAAIGLAGAGAGIGTVFGSLIIGISRNPSLRQELFRVAILGFAL 122
[Close]
BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: A0A8E8U4W3_9PHAE (ATP synthase subunit 9, mitochondrial n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4W3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.030e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            MLLQA+K +    A I L GAGV I TVFG+L+ GT+RNPS+K+EL + A+ G AL
Sbjct:    1 MLLQASKLIGGGLATIGLTGAGVGIGTVFGSLIIGTSRNPSMKEELFKLAVLGFAL 56
[Close]
BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Match: D4HLP7_9PHAE (ATP synthase subunit 9, mitochondrial (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=D4HLP7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.270e-10
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   25 LCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTAISGVAL 168
            L A  A I LAGAGV I TVFGALV GT RNPSLK+EL+R AI G AL
Sbjct:    2 LGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKEELIRIAILGFAL 49
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig618.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2LTP8_9PHAE1.820e-1371.43ATP synthase subunit 9, mitochondrial n=153 Tax=St... [more]
Q3S284_THAPS3.680e-1369.64ATP synthase subunit 9, mitochondrial n=16 Tax=Bac... [more]
A0A2U9GIF0_9STRA3.680e-1369.64ATP synthase subunit 9, mitochondrial n=3 Tax=Euka... [more]
D2Z269_HETAK1.490e-1267.86ATP synthase subunit 9, mitochondrial n=1 Tax=Hete... [more]
A0A343A6X7_9STRA3.010e-1267.86ATP synthase subunit 9, mitochondrial n=5 Tax=Navi... [more]
Q6E768_SAPFE1.730e-1164.29ATP synthase subunit 9, mitochondrial n=4 Tax=Sapr... [more]
A0A8F0FD85_9PHAE1.730e-1164.29ATP synthase subunit 9, mitochondrial n=1 Tax=Prot... [more]
A0A455REF5_9EUKA5.620e-1160.71ATP synthase subunit 9, mitochondrial n=1 Tax=Maro... [more]
A0A8E8U4W3_9PHAE7.030e-1157.14ATP synthase subunit 9, mitochondrial n=2 Tax=Phae... [more]
D4HLP7_9PHAE1.270e-1070.83ATP synthase subunit 9, mitochondrial (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig618contigP-littoralis_Contig618:98111..98319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog109760.SPPG_12025T0
Preferred nameatp9
PFAMsATP-synt_C
Model size209
Max annot lvl4751|Fungi
KEGG rclassRC00061
KEGG koko:K02128,ko:K03880
KEGG TC3.A.2.1,3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map05010,map05012,map05016
KEGG ModuleM00142,M00158
Hectar predicted targeting categorymitochondrion
GOsGO:0000276,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0046933,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
Exons1
Evalue2.21e-08
EggNOG OGsCOG0636@1|root,KOG3025@2759|Eukaryota,3A3YG@33154|Opisthokonta,3P7BC@4751|Fungi
EC1.6.5.3
DescriptionBelongs to the ATPase C chain family
Cds size198
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791286.4268847-CDS-P-littoralis_Contig618:98110..983081680791286.4268847-CDS-P-littoralis_Contig618:98110..98308Pylaiella littoralis U1_48CDSP-littoralis_Contig618 98111..98308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791286.442445-UTR-P-littoralis_Contig618:98308..983191680791286.442445-UTR-P-littoralis_Contig618:98308..98319Pylaiella littoralis U1_48UTRP-littoralis_Contig618 98309..98319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig618.22.1prot_P-littoralis_Contig618.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig618 98111..98308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig618.22.1

>prot_P-littoralis_Contig618.22.1 ID=prot_P-littoralis_Contig618.22.1|Name=mRNA_P-littoralis_Contig618.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
MLLQAAKRLCASRAAIDLAGAGVRIRTVFGALVFGTTRNPSLKDELLRTA
ISGVALLLKRLLYLL*
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mRNA from alignment at P-littoralis_Contig618:98111..98319+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig618.22.1 ID=mRNA_P-littoralis_Contig618.22.1|Name=mRNA_P-littoralis_Contig618.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=209bp|location=Sequence derived from alignment at P-littoralis_Contig618:98111..98319+ (Pylaiella littoralis U1_48)
ATGTTGCTTCAAGCTGCGAAACGTTTATGTGCTAGTCGAGCTGCTATTGA
TTTAGCTGGGGCAGGTGTTCGTATTAGAACTGTATTTGGTGCTCTTGTAT
TCGGTACCACACGCAATCCTTCCCTGAAAGACGAATTACTCAGAACTGCA
ATTTCAGGTGTCGCTCTATTACTGAAGCGGCTGCTTTATTTGCTTTAATG
ATGACTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig618:98111..98319+

>mRNA_P-littoralis_Contig618.22.1 ID=mRNA_P-littoralis_Contig618.22.1|Name=mRNA_P-littoralis_Contig618.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig618:98111..98319+ (Pylaiella littoralis U1_48)
ATGTTGCTTCAAGCTGCGAAACGTTTATGTGCTAGTCGAGCTGCTATTGA
TTTAGCTGGGGCAGGTGTTCGTATTAGAACTGTATTTGGTGCTCTTGTAT
TCGGTACCACACGCAATCCTTCCCTGAAAGACGAATTACTCAGAACTGCA
ATTTCAGGTGTCGCTCTATTACTGAAGCGGCTGCTTTATTTGCTTTAA
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