mRNA_P-littoralis_Contig618.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig618.37.1
Unique NamemRNA_P-littoralis_Contig618.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig618.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig618contigP-littoralis_Contig618:147095..149960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size301
Hectar predicted targeting categorysignal peptide
Exons3
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791285.8275974-CDS-P-littoralis_Contig618:147094..1471751680791285.8275974-CDS-P-littoralis_Contig618:147094..147175Pylaiella littoralis U1_48CDSP-littoralis_Contig618 147095..147175 +
1680791285.839164-CDS-P-littoralis_Contig618:148523..1486311680791285.839164-CDS-P-littoralis_Contig618:148523..148631Pylaiella littoralis U1_48CDSP-littoralis_Contig618 148524..148631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791285.8487408-UTR-P-littoralis_Contig618:148631..1486591680791285.8487408-UTR-P-littoralis_Contig618:148631..148659Pylaiella littoralis U1_48UTRP-littoralis_Contig618 148632..148659 +
1680791285.8581028-UTR-P-littoralis_Contig618:149878..1499601680791285.8581028-UTR-P-littoralis_Contig618:149878..149960Pylaiella littoralis U1_48UTRP-littoralis_Contig618 149879..149960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig618.37.1prot_P-littoralis_Contig618.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig618 147095..148631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig618.37.1

>prot_P-littoralis_Contig618.37.1 ID=prot_P-littoralis_Contig618.37.1|Name=mRNA_P-littoralis_Contig618.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
WVRSLCSTLLGPAFSSDYAGDGPTSPLETVASETRSEPTKSCWQLGDASS
VRRLTRWAENSF*
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mRNA from alignment at P-littoralis_Contig618:147095..149960+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig618.37.1 ID=mRNA_P-littoralis_Contig618.37.1|Name=mRNA_P-littoralis_Contig618.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2866bp|location=Sequence derived from alignment at P-littoralis_Contig618:147095..149960+ (Pylaiella littoralis U1_48)
TGGGTGCGATCTTTGTGTAGCACGCTGCTCGGCCCAGCGTTCTCGTCGGA
TTACGCCGGAGACGGACCAACATCGCCCTTGGTGAGCTGCATAGATGTAT
TGTTTGTAAGGAGCGTTTGAAACATTCCGAAAAAAAATGTTGCAATTCAC
GACAAAATACAGCGACAGGCAGAGGGCAGGTAGATGAAGAGGGTATTTGT
TTCTTGTTTGGGGGGAAGGTACTGACAACGTGTATTCGATTTGGTGCCGT
GACGATATGCATGTCGCGCGAGGACGATGAACCGCGGGCTTTCGTGCAAG
ACAACGGGGGCTCCGATGGCGAGGCATGCGAAGCTCGGGAGGTTGTTGTT
TTTTGGCGTCGTCGAGAGAGACGACTTCGTCGCGCTCACCCGTCGGCCAC
CGGGCGGTGGGAGGTGGCACCTGTGAATCCGATAGCAATTTGGTCGGTGT
CGCATGCAAATCGCCAGGACGTAGTGATGCATTGAAGTCGACGAAATTAG
TCAGGCAGGAAGAAGAATGGATGGAAGGGGGGTGGGGGTGAAGTAGCGGT
TGAGGGGGGGCCACAGAAAGCGACCAAAAACGTCTTAAACAAAAGTGGAA
AGAGTGACCACGTTCTAAATTTTGGTCAACAGAGACTCTTAGAGAACAGC
ACATCATTAACGTACAACAGACGATCTACCTGTTGCTGCTACTGGAGTAT
TCTTCTTCCGAGGAAGTTGGTCGCAGGTGGTAAAGACAAGAAAGAGATGT
ATCCAACAAACAGCAGAAAACGAAACATATGCGCACGTAAATGTACCAGT
CATTATGTACGCACGCACGTACACCCTACACCTTCAGGCATACATGGGGT
GTCCGACACATGTCATCCAAATCAATGAATCGCTTTTTGTGAATGAAGGC
CTCGTATGTACCCTACCGCACACACATCTTCCTCAAAATAAATATTTACG
CTGTTGCTCTATGTTGTCCGTTGTCTGGCAGTGAGTGGTCGCGTTCGTGT
GAAGGCCTCATATCCTACCGCACATTTTATTTACTAAATTTAACATGTAT
ATTATTGCCTTCATACCATCGCGACGAGTTTCGTTGGCGTTGCCTGTCTT
AAGCGAGTTTTTATATTAGGTGCTTCACGTGTGTGTGTCCGGGTTGTCAA
TGTGTTTCGGAAGTTGGTGCAGGCAGTACGAGCGAAATATAATGCTCTGA
ATACCAACCAACCTACTTTGAAACCGAGAGAGAGGTAAAATGCAATGAGA
GCTACGAGGATAGATTGGAAATATTCTTTAAAAATACATCTGACGACTAC
TCTGGTGCAATCATCCTCACGTTGCGGTACGACAAATACACACACAACTT
GCGTAGTTCACACATGTGTCAGGCGCCGCCGCACCCCTGCGGGAGCTGCA
AACACTCCTCCATGTTTCGCCTGTCTCAGGAGACCGTAGCAAGTGAAACG
CGCAGTGAGCCGACCAAATCGTGCTGGCAACTTGGAGATGCTTCAAGTGT
CCGGAGACTCACGCGTTGGGCGGAGAACAGCTTTTGAGAGTCACCCGATC
TAGGGATACCCGAAGGTATGAACGGGGTTACACATCCGACTTGTTATTTG
GGTCAAAAAATGTTCAGATTCAATGCGGTTAACCCTTCTGGGACCAGAGT
GTTTCGTTCCTTTTCACACGAACAGCCCGGGTTCCAAATCAGAACCATAC
AATGTTCCCCCGAGAAATTTTTTTTTGGCTCAAATGTCTCTTTCAAATGT
ACAGCAGTCACGAAACCAAGAGAAAATGTACACAACCGCACCACAAAGAT
ATACAGCCAGGGCCCCTGACGGGGGCTCACAGCGGGCTGGTTACGTCCCT
GGAGAGTACAGAAGGGATACCAGGTGGTCGAGATACCGCGGCTAGCTCTC
AGGCGTCGTGCAACGTGTTCTAAACATCAATAGCGCTTAAAGTATCCAGT
CCCCTCAAAACAAGATAATAAAGAAAAAGAGTTACTGCTAAGGAGTTACT
GCTAAGGAGTTACTCGTTTCCCGCTGTAGCTCCCGGCCTGGTAAACGTAC
TTTTGCGCAGGGGCCCCGTGGCCTGCGGCCGGCCTGAAGGCCGGTCCTTC
CTTCTCGCACATAGTAGGCACATCATTGGTACTGGTAGCAGTAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGTATTAGTAGTCTAGTAA
TCTAGCGACCAATCGCATGCATCTACATAATATCTACATACATGCTGCTG
CTGCTGTTATGGCTGGGTTTTGACCAAACAAGATACTTTCGAAGTAATAA
ATAGAGGAGTGGCCAAAAACGGGTTTACCCGATGCTTTCATGACCATTAT
CGGGTACCTGGTTAGCTCGGTGACCAAAACCGCCCCAGAACGCCATCTCA
TTGGTCAGAACCCTCCGCCACCCGACGATGGCCACATTCCCGCCGGGTAT
GCCCGATTTTGGCTATTCAACCCGCGGAGGGTACCCGAATCTCTCATACC
CTACCCGGAAATGGCCACTAATACACGGGCTCTTCGACCAACGGGCCACA
CACAGAGAGCACAAACGCCAACACTAAGGTCCACCACCGCTACCGACCGC
AGCCAGGATCACCCGGGATCACCCTCATTATTTATCATGTCATCACCCAA
AAAAATGCAACATTCAAGATCGAAAACAAGACAATCATCAAAAGAATAGA
GAAATAATTCGTAGCACCGCTGTATGCAGCAGTGCACAGACAGCAGTCAG
AATAATCATGAGCAATGATTACCTCACCCTGCAGCAGCGTTTCCCCGACA
CGAAGTTGTTGCGAGCTGCCGTGGGCCGGTTCTTCGCCCATGACAGCCGC
TCGTTTACCTCGAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig618:147095..149960+

>mRNA_P-littoralis_Contig618.37.1 ID=mRNA_P-littoralis_Contig618.37.1|Name=mRNA_P-littoralis_Contig618.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig618:147095..149960+ (Pylaiella littoralis U1_48)
TGGGTGCGATCTTTGTGTAGCACGCTGCTCGGCCCAGCGTTCTCGTCGGA
TTACGCCGGAGACGGACCAACATCGCCCTTGGAGACCGTAGCAAGTGAAA
CGCGCAGTGAGCCGACCAAATCGTGCTGGCAACTTGGAGATGCTTCAAGT
GTCCGGAGACTCACGCGTTGGGCGGAGAACAGCTTTTGA
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