mRNA_P-littoralis_Contig617.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig617.67.1
Unique NamemRNA_P-littoralis_Contig617.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: A0A6H5J9C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C0_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.500e-20
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  183 WLAIPSFSPHASRSFWASHALNTGQVNAHNVDDFSSYLQVSTATLRAKRLLGPT-PGAHKLGNEV*GRW*MLLGFGRNDRKGAPSRSPRNWVPGGWSSLLMLAPLCR----STAAKPGYCFVI**SSVKLGSSEDEKWFAWSQTFFENADYRNFKKFIN 644
            WL+I +F PH  RSFWAS ALN+GQVN++N++DFSS+LQVS+ATLR   +       AH LGNEV G    +   G    +       +        S  + A L +    +T+ K     +   ++ +L   EDEKWF W  TFF   D R F++F++
Sbjct:  645 WLSIENFGPHVCRSFWASSALNSGQVNSNNLEDFSSFLQVSSATLRNSYMAATANTAAHTLGNEVLGAVSNMACTGETTERANRPYGKKLCAKRNEFSADIQAYLAKHRGTTTSRKVFRALIRKRAASQL--LEDEKWFRWENTFFGEGDERLFQRFVD 801          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: A0A6H5L2T2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.010e-18
Identity = 58/161 (36.02%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  180 HWLAIPSFSPHASRSFWASHALNTGQVNAHNVDDFSSYLQVSTATLRAKRLLGPT-PGAHKLGNEV*GRW*MLLGFGRNDRKGAPSRSPRNWVPGGWSSLLMLAPLCRSTAAK-PGYCFVI**SSVKLGSS----EDEKWFAWSQTFFENADYRNFKKFIN 644
            HWL I +F PH  R+FW++HALN+GQ++  N++DFSS+LQVS+ TLR   +       AH +GNEV G        G    KGA     +          L  A   R++ AK  G   ++  + ++  ++    E EKWF W  TFF  +D R F++F++
Sbjct:  606 HWLGISNFGPHVCRTFWSTHALNSGQISGSNLEDFSSFLQVSSTTLRNSYMAAAANTAAHTVGNEVLGAVVNSACTGETTEKGARPYGKKLSA-----RRLEFAGEIRASLAKYSGNGRLLFRALLQKRNASQLAEGEKWFRWENTFFSQSDERLFQRFVD 761          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.510e-18
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 PVSHFNLSAEQSMIVHFLARVGHRFCNGSMEDDKRRLLLNSKGEGWTQADIRSRFKNI 174
            PVSHFNLS  QSM+VHF+A VGHRFCN +M+DDKR+LLLNSKG+G+ Q+DI+S FK I
Sbjct: 1102 PVSHFNLSPGQSMMVHFIAVVGHRFCNANMKDDKRKLLLNSKGQGYVQSDIKSPFKKI 1159          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: A0A6H5K0T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.870e-18
Identity = 57/161 (35.40%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  180 HWLAIPSFSPHASRSFWASHALNTGQVNAHNVDDFSSYLQVSTATLRAKRLLGPT-PGAHKLGNEV*GRW*MLLGFGRNDRKGAPSRSPRNWVPGGWSSLLMLAPLCRSTAAK-PGYCFVI**SSVKLGSS----EDEKWFAWSQTFFENADYRNFKKFIN 644
            HWL I +F PH  R+FW++HALN+GQ++  N++DFSS++QVS+ TLR   +       AH +GNEV G        G    KGA     +          L  A   R++ AK  G   ++  + ++  ++    E EKWF W  TFF  +D R F++F++
Sbjct:  606 HWLGISNFGPHVCRTFWSTHALNSGQISGSNLEDFSSFIQVSSTTLRNSYMAAAANTAAHTVGNEVLGAVVNSACTGETTEKGARPYGKKLSA-----RRLEFAGEIRASLAKYSGNGRLLFRALLQKRNASQLAEGEKWFRWENTFFSQSDERLFQRFVD 761          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: D8LP31_ECTSI (EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP31_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.600e-17
Identity = 65/184 (35.33%), Postives = 89/184 (48.37%), Query Frame = 3
Query:  126 G*GMDPG*HSVEIQEHRGHWLAIPSFSPHASRSFWASHALNTGQVNAHNVDDFSSYLQVSTATLRAK-RLLGPTPGAHKLGNEV*G-----RW*MLLGFGRNDRKGAPSRSPRNWVPGGWSSLLMLAPLCRSTAAKPG---YCFVI**SSVKLGS-SEDEKWFAWSQTFFENADYRNFKKFING 647
            G G  P       ++   +WL I +FSPH  R+FWA+HALN+GQVN+ N+DDFSSYLQVS+ATLR+          AH +GN V G        + +    +  +G   R  R         L  LA +  S     G   + F       K+G   E EKWF    TF+++   R F +F+ G
Sbjct:  617 GEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLRSSYAAASANTAAHTIGNVVLGGVVNSACRVEIAENGDGPQGPKLRKIR---------LEFLADIRASLLKYSGDAKHMFQDLVRKRKVGQLGESEKWFRKENTFWKDEHERVFLRFVGG 791          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.780e-17
Identity = 65/185 (35.14%), Postives = 90/185 (48.65%), Query Frame = 3
Query:  123 EG*GMDPG*HSVEIQEHRGHWLAIPSFSPHASRSFWASHALNTGQVNAHNVDDFSSYLQVSTATLRAKR-LLGPTPGAHKLGNEV*G-----RW*MLLGFGRNDRKGAPSRSPRNWVPGGWSSLLMLAPLCRSTAAKPG---YCFVI**SSVKLGS-SEDEKWFAWSQTFFENADYRNFKKFING 647
            +G G  P       ++   +WL I +FSPH  R+FWA+HALN+GQVN+ N+DDFSSYLQVS+ATLR+          AH +GN V G        + +    +  +G   R  R         L  LA +  S     G   + F       K+G   E EKWF    TF+++   R F +F+ G
Sbjct:  598 KGEGWTPNDTRSRFKKIGAYWLGIENFSPHVCRTFWATHALNSGQVNSSNIDDFSSYLQVSSATLRSSYGAASANTAAHTIGNVVLGGVVNSACHVEIAENGDGPQGPKLRKIR---------LEFLADIRASLLKYSGDAKHMFQDLVRKRKVGQLGESEKWFRKENTFWKDEHERVFLRFVGG 773          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: D7FL01_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL01_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.270e-16
Identity = 63/160 (39.38%), Postives = 82/160 (51.25%), Query Frame = 3
Query:  183 WLAIPSFSPHASRSFWASHALNTGQVNAHNVDDFSSYLQVSTATLRAKRL-LGPTPGAHKLGNEV*GRW*MLLGFGRNDRKGA-PSRSPRNWVPGGWSSLLMLAPLCRSTAAKPG----YCFVI**SSVKLGS-SEDEKWFAWSQTFFENADYRNFKKFI 641
            WL I  F PHA RSF+A+HALNTGQV   NV++FSS+LQVS+ATLR   +  G    AH LG+EV G        G   ++GA P     N      S  L      R++  K G      F       + G  ++DEKWF +  TFF     R F++F+
Sbjct:  457 WLGIQKFCPHACRSFYATHALNTGQVTPANVENFSSFLQVSSATLRNSYMSAGAHTAAHTLGSEVLGSVVNAACTGATTKEGAAPYGKKLN------SRRLEFVEQIRASLVKYGGNGRLMFRDLVQKREAGRLADDEKWFRFDSTFFSEKKERLFQRFL 610          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: Q8QN77_ESV1K (EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K)

HSP 1 Score: 87.0 bits (214), Expect = 3.410e-16
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 PVSHFNLSAEQSMIVHFLARVGHRFCNGSMEDDKRRLLLNSKGEGWTQADIRSRFKNI 174
            PVSHFNLS  QSM+VHF+A VGHRFCN  M+D KR+LLLNSKG G  Q DI S FK I
Sbjct:  567 PVSHFNLSPGQSMMVHFIAVVGHRFCNADMKDSKRKLLLNSKGRGCVQNDINSPFKKI 624          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: D7FZG9_ECTSI (EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.270e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 PVSHFNLSAEQSMIVHFLARVGHRFCNGSMEDDKRRLLLNSKGEGWTQADIRSRFKNI 174
            PVSHFNLS  QSM+VHF+A VGHRFC+  M+D KR+LLLNSKG G+ Q DI S FK I
Sbjct:  377 PVSHFNLSPGQSMMVHFIAVVGHRFCDADMKDSKRKLLLNSKGRGYVQNDINSPFKKI 434          
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Match: B2KWI6_ECTSI (EsV-1-213-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.320e-14
Identity = 57/186 (30.65%), Postives = 87/186 (46.77%), Query Frame = 3
Query:  102 KKAASQFEG*GMDPG*HSVEIQEHRGHWLAIPSFSPHASRSFWASHALNTGQVNAHNVDDFSSYLQVSTATLRAKRLLGP-TPGAHKLGNEV*GRW*MLLGFGRNDRKGAPSRSPRNWVPGGWSSLLMLAPLCRSTAAKPGYCFVI**SSVKLGSS----EDEKWFAWSQTFFENADYRNFKKFIN 644
            K  +S+F+  GM               WL I +F PH  RSFW++HAL++GQV+A N+++FSS+LQVS++TLR   +       AH +GN+V G        G    KG      +         L     +  S A   G    +    ++  ++    + E WF W  TFF   D R F++F++
Sbjct:  619 KDVSSRFKRIGMQ--------------WLGIQNFGPHVCRSFWSTHALSSGQVSASNLENFSSFLQVSSSTLRNSYMSATGNSAAHTVGNQVLGAVVNAACTGETTEKGTRPYGKKLSA----RRLEFAGEIRASLARFQGNGRRLFREMLQKRNASQLGDTETWFRWENTFFCEGDERLFQRFLD 786          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig617.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5J9C0_9PHAE6.500e-2038.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2T2_9PHAE1.010e-1836.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJP2_9PHAE1.510e-1872.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T8_9PHAE1.870e-1835.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP31_ECTSI1.600e-1735.33EsV-1-213 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP... [more]
A0A6H5JVT4_9PHAE1.780e-1735.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL01_ECTSI1.270e-1639.38EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN77_ESV1K3.410e-1670.69EsV-1-213 n=2 Tax=root TaxID=1 RepID=Q8QN77_ESV1K[more]
D7FZG9_ECTSI4.270e-1668.97EsV-1-213 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
B2KWI6_ECTSI3.320e-1430.65EsV-1-213-like protein 2 n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig617contigP-littoralis_Contig617:174130..174782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size653
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791285.7185235-UTR-P-littoralis_Contig617:174129..1745211680791285.7185235-UTR-P-littoralis_Contig617:174129..174521Pylaiella littoralis U1_48UTRP-littoralis_Contig617 174130..174521 -
1680791285.7437434-UTR-P-littoralis_Contig617:174746..1747821680791285.7437434-UTR-P-littoralis_Contig617:174746..174782Pylaiella littoralis U1_48UTRP-littoralis_Contig617 174747..174782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791285.7306256-CDS-P-littoralis_Contig617:174521..1747461680791285.7306256-CDS-P-littoralis_Contig617:174521..174746Pylaiella littoralis U1_48CDSP-littoralis_Contig617 174522..174746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig617.67.1prot_P-littoralis_Contig617.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig617 174522..174746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig617.67.1

>prot_P-littoralis_Contig617.67.1 ID=prot_P-littoralis_Contig617.67.1|Name=mRNA_P-littoralis_Contig617.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
MIVHFLARVGHRFCNGSMEDDKRRLLLNSKGEGWTQADIRSRFKNIEDIG
WPFPALAPTLQGHSGRAMLSTQVR*
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mRNA from alignment at P-littoralis_Contig617:174130..174782-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig617.67.1 ID=mRNA_P-littoralis_Contig617.67.1|Name=mRNA_P-littoralis_Contig617.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=653bp|location=Sequence derived from alignment at P-littoralis_Contig617:174130..174782- (Pylaiella littoralis U1_48)
CCCGTGAGTCACTTTAACCTGTCGGCGGAGCAGAGCATGATCGTACATTT CCTCGCCAGGGTTGGCCACCGTTTCTGCAACGGGAGCATGGAGGATGATA AAAGAAGGCTGCTTCTCAATTCGAAGGGTGAGGGATGGACCCAGGCTGAC ATTCGGTCGAGATTCAAGAACATCGAGGACATTGGCTGGCCATTCCCAGC TTTAGCCCCCACGCTTCAAGGTCATTCTGGGCGAGCCATGCTCTCAACAC AGGTCAGGTGAACGCACACAATGTGGACGATTTCAGCTCTTATCTCCAGG TGTCTACTGCCACCTTACGAGCAAAGCGGCTTCTGGGGCCCACTCCTGGC GCTCACAAGCTGGGTAATGAGGTTTAGGGCCGGTGGTGAATGCTGCTTGG CTTTGGGAGAAACGACAGGAAAGGGGCGCCAAGCCGCTCACCAAGAAACT GGGTGCCAGGCGGGTGGAGTTCGCTGCTGATGCTCGCGCCTCTCTGCCGA AGTACGGCGGCAAAACCAGGCTACTGTTTCGTGATCTAGTGATCAAGCGT AAAGCTGGGCAGCTCGGAGGACGAGAAGTGGTTCGCTTGGAGCCAAACTT TCTTTGAAAACGCTGACTACCGGAATTTCAAGAAGTTCATAAATGGGCAC GTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig617:174130..174782-

>mRNA_P-littoralis_Contig617.67.1 ID=mRNA_P-littoralis_Contig617.67.1|Name=mRNA_P-littoralis_Contig617.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig617:174130..174782- (Pylaiella littoralis U1_48)
ATGATCGTACATTTCCTCGCCAGGGTTGGCCACCGTTTCTGCAACGGGAG
CATGGAGGATGATAAAAGAAGGCTGCTTCTCAATTCGAAGGGTGAGGGAT
GGACCCAGGCTGACATTCGGTCGAGATTCAAGAACATCGAGGACATTGGC
TGGCCATTCCCAGCTTTAGCCCCCACGCTTCAAGGTCATTCTGGGCGAGC
CATGCTCTCAACACAGGTCAGGTGA
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