mRNA_P-littoralis_Contig617.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig617.64.1
Unique NamemRNA_P-littoralis_Contig617.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig617.64.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.050e-27
Identity = 80/199 (40.20%), Postives = 106/199 (53.27%), Query Frame = 1 
Query:   61 WEAWFVETDGNCLWRALAKALWDYDQFWPHLKVVVLGWTAVNAGALVEDGGGLFRCKNFYSQAIVEK--YSCPADSSGLTCDAVDNALVMVLESILKFCPNKEWGGDLTALWTSQALGITVKLVVPTDMQARKKNEATGRQPGG--GTGRNGDNRDISRSSRCFRPDKGQQEWRVHGQEDRVVDEVTIALTGGCTRASS 645
            W A +V  DGNC WR+LAK LW+ D++W  LK+VVL W A +A  LV +G  L      +S  I     Y+  A   G    +V     M+L S+   C +  WGGD T L  SQAL ITVKL+ P D+  RK++E++   PG   G GR GD  D +R S+ F  D       + G   R+V E T+ LT  CT  +S
Sbjct:    6 WVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDIHAGLGYAYSATCVG-AAPSVAQTSRMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPNDVMVRKRDESSA-TPGTIRGAGRKGDKVDDTRLSQTFLADDAVSCLHIQGG-GRMVAEATVVLTS-CTGQAS 200
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BLAST of mRNA_P-littoralis_Contig617.64.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.180e-26
Identity = 78/213 (36.62%), Postives = 112/213 (52.58%), Query Frame = 1 
Query:   16 DRYATALIPQRLRHIWEAWFVETDGNCLWRALAKALWDYDQFWPHLKVVVLGWTAVNAGALVEDGGGLFRCKNF--YSQAIVEKYSCPADSSGLTCDAVDNALVMVLESILKFCPNKEWGGDLTALWTSQALGITVKLVVPTDMQARKKNE-------ATGRQPGGGTGRNGDNRDISRSSRCFRPDKGQQEWRVHG---QEDRVVDEVTIAL 618
            D  AT ++   LR  + A +VE DGNC WR++AKALW  D++W  LK+ VL W+AVN  ALV +GG LF       Y   I  K+       G     +D+   M+LESI KF  N++WGG L  +  ++  G+ +K+  P DM+AR + +       AT    GG     GD+R     S    P  G++E  + G   +ED VV+E+ I +
Sbjct:   87 DPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKHIYRGPD-GKVDHRLDDDASMLLESIAKFSANRQWGGCLAGVLFTERTGLVLKMPHPFDMRARIRADTSGAAAKATASYGGGSEDEFGDHR----YSFTKVPTAGRKEIILRGVSDEEDIVVEEIAITM 294
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig617.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE1.050e-2740.20SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE1.180e-2636.62SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig617contigP-littoralis_Contig617:165070..165729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size661
Hectar predicted targeting categoryother localisation
Exons1
Cds size660
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791285.6601799-CDS-P-littoralis_Contig617:165069..1657291680791285.6601799-CDS-P-littoralis_Contig617:165069..165729Pylaiella littoralis U1_48CDSP-littoralis_Contig617 165070..165729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig617.64.1prot_P-littoralis_Contig617.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig617 165070..165729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig617.64.1

>prot_P-littoralis_Contig617.64.1 ID=prot_P-littoralis_Contig617.64.1|Name=mRNA_P-littoralis_Contig617.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=220bp
NLPRLDRYATALIPQRLRHIWEAWFVETDGNCLWRALAKALWDYDQFWPH
LKVVVLGWTAVNAGALVEDGGGLFRCKNFYSQAIVEKYSCPADSSGLTCD
AVDNALVMVLESILKFCPNKEWGGDLTALWTSQALGITVKLVVPTDMQAR
KKNEATGRQPGGGTGRNGDNRDISRSSRCFRPDKGQQEWRVHGQEDRVVD
EVTIALTGGCTRASSFDVVH
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mRNA from alignment at P-littoralis_Contig617:165070..165729-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig617.64.1 ID=mRNA_P-littoralis_Contig617.64.1|Name=mRNA_P-littoralis_Contig617.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig617:165070..165729- (Pylaiella littoralis U1_48)
AATCTACCGCGGTTGGACCGGTACGCAACGGCGCTTATCCCACAACGGCT
GCGCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTGCTTGT
GGCGTGCCCTCGCCAAGGCCTTGTGGGATTACGACCAGTTTTGGCCCCAT
TTGAAGGTTGTGGTTTTAGGATGGACTGCTGTGAACGCGGGAGCCCTTGT
AGAAGATGGTGGAGGCCTTTTTCGCTGCAAGAACTTCTATTCGCAAGCCA
TCGTCGAGAAGTATTCGTGCCCCGCTGACTCAAGTGGGCTTACTTGTGAT
GCGGTCGACAACGCCCTCGTGATGGTCCTGGAGTCCATCCTGAAATTTTG
CCCAAATAAAGAGTGGGGCGGAGACCTTACCGCGCTCTGGACATCTCAAG
CGCTAGGCATCACGGTGAAGTTGGTTGTTCCTACTGACATGCAGGCGCGG
AAGAAGAACGAGGCAACGGGGAGGCAACCGGGTGGAGGAACTGGTAGGAA
CGGGGACAACCGCGATATCAGTCGCAGCTCTCGTTGTTTCCGACCCGATA
AGGGACAGCAGGAGTGGCGCGTACATGGGCAAGAAGATCGTGTTGTGGAC
GAGGTCACTATCGCTTTGACGGGGGGTTGCACACGCGCGAGTTCATTCGA
CGTCGTACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig617:165070..165729-

>mRNA_P-littoralis_Contig617.64.1 ID=mRNA_P-littoralis_Contig617.64.1|Name=mRNA_P-littoralis_Contig617.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig617:165070..165729- (Pylaiella littoralis U1_48)
AATCTACCGCGGTTGGACCGGTACGCAACGGCGCTTATCCCACAACGGCT
GCGCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTGCTTGT
GGCGTGCCCTCGCCAAGGCCTTGTGGGATTACGACCAGTTTTGGCCCCAT
TTGAAGGTTGTGGTTTTAGGATGGACTGCTGTGAACGCGGGAGCCCTTGT
AGAAGATGGTGGAGGCCTTTTTCGCTGCAAGAACTTCTATTCGCAAGCCA
TCGTCGAGAAGTATTCGTGCCCCGCTGACTCAAGTGGGCTTACTTGTGAT
GCGGTCGACAACGCCCTCGTGATGGTCCTGGAGTCCATCCTGAAATTTTG
CCCAAATAAAGAGTGGGGCGGAGACCTTACCGCGCTCTGGACATCTCAAG
CGCTAGGCATCACGGTGAAGTTGGTTGTTCCTACTGACATGCAGGCGCGG
AAGAAGAACGAGGCAACGGGGAGGCAACCGGGTGGAGGAACTGGTAGGAA
CGGGGACAACCGCGATATCAGTCGCAGCTCTCGTTGTTTCCGACCCGATA
AGGGACAGCAGGAGTGGCGCGTACATGGGCAAGAAGATCGTGTTGTGGAC
GAGGTCACTATCGCTTTGACGGGGGGTTGCACACGCGCGAGTTCATTCGA
CGTCGTACAC
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