mRNA_P-littoralis_Contig617.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig617.62.1
Unique NamemRNA_P-littoralis_Contig617.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig617.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig617contigP-littoralis_Contig617:163119..163978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size321
Hectar predicted targeting categoryother localisation
Exons2
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791284.6308846-CDS-P-littoralis_Contig617:163118..1633831680791284.6308846-CDS-P-littoralis_Contig617:163118..163383Pylaiella littoralis U1_48CDSP-littoralis_Contig617 163119..163383 -
1680791284.6430306-CDS-P-littoralis_Contig617:163922..1639781680791284.6430306-CDS-P-littoralis_Contig617:163922..163978Pylaiella littoralis U1_48CDSP-littoralis_Contig617 163923..163978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig617.62.1prot_P-littoralis_Contig617.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig617 163119..163978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig617.62.1

>prot_P-littoralis_Contig617.62.1 ID=prot_P-littoralis_Contig617.62.1|Name=mRNA_P-littoralis_Contig617.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
TSKCCVHNNVFQSQCPCRSCVRRRRSKNRRGRGGRAAGRGAAGRAQGTQT
GRKTQVWNADAVYVLPAGERDESTTLSVGIYGANRVITSVNSKTKGSSCS
RPNCHT*
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mRNA from alignment at P-littoralis_Contig617:163119..163978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig617.62.1 ID=mRNA_P-littoralis_Contig617.62.1|Name=mRNA_P-littoralis_Contig617.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=860bp|location=Sequence derived from alignment at P-littoralis_Contig617:163119..163978- (Pylaiella littoralis U1_48)
ACCTCCAAGTGCTGCGTCCACAACAACGTGTTCCAAAGCCAGTGCCCCTG
CCGCAGGTGAGAGTGTGATGCGAAACGTCCGGAAGCACAACGATCGGCGA
TGTCTCTTTGTTACGATCCCTGGCAAAAACAGGATATGTCAATGAGGATC
AACGCCCCCCGCCGAATATTCTTGTTTTATGTACCATTGGGTTCGGAGAA
GGTCGACGAGGACAAATGGAGTTGAATATATGGGTCGTTGTGTGTTGGCT
CCGCGCCTGGTTTTCGGAAGTAACTACAAATGGATTGGGATACAGGTAGA
ATTAGTGCTGTGGCGGTTGATATCCTTGTTTCTTTCACGTTCCAACAGCT
GCGCGAACGTGAATGTTTTGCAAAACACGAACAAGACGAGACCGTGGCAG
AGCCCTCGCTTGCAACATTTCGATTTTTTTTTTAGCGCTTAAATTATCCC
TCGGTATTGCAAAGTAGCCGTCAGGCCTTGTGTACCTTCTTTAGCGTCAA
GACTAGTCGTACACCTTCGCACATCTTTGTGAAAGGTAACGCACATGTAA
TTTGAACGAACCTTTTGTTCTGCCTCTGCCATCGGTACCTTCCAGCTGCG
TTAGGCGCAGGCGCTCGAAGAACAGGCGGGGAAGGGGAGGTCGAGCAGCG
GGACGAGGAGCTGCCGGCCGCGCGCAGGGCACACAAACTGGAAGAAAGAC
GCAAGTGTGGAACGCGGATGCCGTCTACGTACTGCCGGCGGGTGAGCGAG
ATGAGAGCACAACCCTGTCAGTGGGCATTTACGGCGCGAACAGAGTGATA
ACATCGGTGAACTCGAAGACCAAGGGTTCCAGCTGCTCACGGCCAAATTG
CCACACGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig617:163119..163978-

>mRNA_P-littoralis_Contig617.62.1 ID=mRNA_P-littoralis_Contig617.62.1|Name=mRNA_P-littoralis_Contig617.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig617:163119..163978- (Pylaiella littoralis U1_48)
ACCTCCAAGTGCTGCGTCCACAACAACGTGTTCCAAAGCCAGTGCCCCTG
CCGCAGCTGCGTTAGGCGCAGGCGCTCGAAGAACAGGCGGGGAAGGGGAG
GTCGAGCAGCGGGACGAGGAGCTGCCGGCCGCGCGCAGGGCACACAAACT
GGAAGAAAGACGCAAGTGTGGAACGCGGATGCCGTCTACGTACTGCCGGC
GGGTGAGCGAGATGAGAGCACAACCCTGTCAGTGGGCATTTACGGCGCGA
ACAGAGTGATAACATCGGTGAACTCGAAGACCAAGGGTTCCAGCTGCTCA
CGGCCAAATTGCCACACGTGA
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