mRNA_P-littoralis_Contig616.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig616.37.1
Unique NamemRNA_P-littoralis_Contig616.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5L610_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L610_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.870e-20
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRERVARGE +VVHVRS LQRADFL K LPK+ FCAHRDFVM+IR
Sbjct:   81 DIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 131
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BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRERVARGE +VVHVRS LQRADFL K LPK+ FCAHRDFVM+IR
Sbjct:  127 DIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 177
[Close]
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5KHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.880e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRERVARGE +VVHVRS LQRADFL K LPK+ FCAHRDFVM+IR
Sbjct:  365 DIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 415
[Close]
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.840e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRERVARGE +VVHVRS LQRADFL K LPK+ FCAHRDFVM+IR
Sbjct:  513 DIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 563
[Close]
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.860e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRERVARGE +VVHVRS LQRADFL K LPK+ FCAHRDFVM+IR
Sbjct:  526 DIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 576
[Close]
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.920e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRERVARGE +VVHVRS LQRADFL K LPK+ FCAHRDFVM+IR
Sbjct:  750 DIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 800
[Close]
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.960e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRERVARGE +VVHVRS LQRADFL K LPK+ FCAHRDFVM+IR
Sbjct: 1826 DIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1876
[Close]
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5K862_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K862_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.970e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRERVARGE +VVHVRS LQRADFL K LPK+ FCAHRDFVM+IR
Sbjct: 2243 DIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 2293
[Close]
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.550e-17
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+H  IRERVARGE R+VHVRS LQRADFL KAL K+AFCAHRDFVM++R
Sbjct:  794 DIRHQCIRERVARGEFRIVHVRSDLQRADFLTKALSKEAFCAHRDFVMNLR 844
[Close]
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Match: A0A6H5L3I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.990e-17
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSIR 153
            DI+HH IRER+ARGE +VVHVRS LQRADFL K LPK+ FCA RDFVM+IR
Sbjct:  222 DIRHHFIRERLARGEFKVVHVRSDLQRADFLTKPLPKETFCAQRDFVMNIR 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig616.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L610_9PHAE3.870e-2080.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZC8_9PHAE1.200e-1980.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN8_9PHAE2.880e-1880.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5L3_9PHAE3.840e-1880.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWG1_9PHAE3.860e-1880.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE3.920e-1880.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE3.960e-1880.39Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K862_9PHAE3.970e-1880.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN01_9PHAE2.550e-1778.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I3_9PHAE2.990e-1776.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig616contigP-littoralis_Contig616:174141..174345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog160860.XP_007353053.1
PFAMsDUF5314,RVT_2,gag_pre-integrs,rve,zf-CCHC
Model size205
Max annot lvl4751|Fungi
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.00028
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size156
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791284.4003344-UTR-P-littoralis_Contig616:174140..1741891680791284.4003344-UTR-P-littoralis_Contig616:174140..174189Pylaiella littoralis U1_48UTRP-littoralis_Contig616 174141..174189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791284.4116862-CDS-P-littoralis_Contig616:174189..1743451680791284.4116862-CDS-P-littoralis_Contig616:174189..174345Pylaiella littoralis U1_48CDSP-littoralis_Contig616 174190..174345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig616.37.1prot_P-littoralis_Contig616.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig616 174190..174345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig616.37.1

>prot_P-littoralis_Contig616.37.1 ID=prot_P-littoralis_Contig616.37.1|Name=mRNA_P-littoralis_Contig616.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
DIKHHSIRERVARGELRVVHVRSALQRADFLAKALPKDAFCAHRDFVMSI
R*
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mRNA from alignment at P-littoralis_Contig616:174141..174345-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig616.37.1 ID=mRNA_P-littoralis_Contig616.37.1|Name=mRNA_P-littoralis_Contig616.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=205bp|location=Sequence derived from alignment at P-littoralis_Contig616:174141..174345- (Pylaiella littoralis U1_48)
GACATCAAGCACCATTCCATTCGCGAACGCGTGGCACGGGGGGAGCTCAG
GGTAGTTCATGTACGTTCTGCGTTGCAGCGTGCTGATTTCTTGGCCAAAG
CACTGCCCAAAGACGCTTTTTGCGCGCACCGTGACTTTGTGATGAGCATT
CGGTGATTTGTGCGTGTTGCGTTGTTCGCCCTGAGTTTCTAGCCGTTCTG
CGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig616:174141..174345-

>mRNA_P-littoralis_Contig616.37.1 ID=mRNA_P-littoralis_Contig616.37.1|Name=mRNA_P-littoralis_Contig616.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig616:174141..174345- (Pylaiella littoralis U1_48)
GACATCAAGCACCATTCCATTCGCGAACGCGTGGCACGGGGGGAGCTCAG
GGTAGTTCATGTACGTTCTGCGTTGCAGCGTGCTGATTTCTTGGCCAAAG
CACTGCCCAAAGACGCTTTTTGCGCGCACCGTGACTTTGTGATGAGCATT
CGGTGA
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