prot_P-littoralis_Contig616.18.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig616.18.1
Unique Name	prot_P-littoralis_Contig616.18.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	872

Homology

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BLAST of mRNA_P-littoralis_Contig616.18.1 vs. uniprot
Match: A0A6H5L7I3_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7I3_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 1.170e-98
Identity = 291/568 (51.23%), Postives = 325/568 (57.22%), Query Frame = 0

Query:  354 EFPLNLECAMCFNPLAVAALFACGHGSCWECAHDWCSRDTSPTMDCPTCHVSVPRNDFRRCVVLDQVVDRAVLAAGMDDDEWRARLQRGQQLAREAESNRRDSRDNQRSAEDTIAKQAAELEKLRKEAKSRVLERRSVRSYEQGFPPSMADYGFRLMGGG------ARDVLDPASHKSAIEEITRFRHRRAEAGEPESSSRDARASGDAAVVAAA---ALGMPPSAAYGGARPRGPTH-------------PGFGPAEGDPWFSLRSSQPGRYPSVAMSAGR-MGREMLGRTHGLSRSAGNSAAG---MGLVHPHLPGSALKSSR---ELASGGSNWRS-AYLEEDRL-LSSGAG----GARTLHHLSVGSRGSP-------VGHVRGGAALERGPPVTRRGDPTAHASSSACFSS--KRFGISS----GAGSGGAFGGVGAAPSASSSSHP--LVGGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEQPTPALDLEELMSGQDDPGSRSEWDDVLASISMPHVGADRGMGRSEEPPGTTRG 871
            E P  LECA+CFNPLAVAALFACGHGSCWECAHDWCSR+TS TMDCPTCHVSVPR+DFRRCVVLD+VVDRAV AAGMDDDEWRAR++RGQ+LAREAE  RR  RD QRSAEDTIA+QAAELEKLR+EAKSR + RR++R+ E G   SMA++GF ++ GG       RD  DPAS +S                                        A GMPPSAAYG   PRG  H              GFG AEGDPWFSLR SQP R  + AM+ GR M RE  GR+    RSAGNSAA    MGL  P    +ALKS         GG+NWRS AYL   R  LS GAG    G RT  H S  +R  P       VG    G  L+ G      G P    +      S  K  G+S     GA + G   G  AA   +S+S+P  L  G+G       XXXXXXXXXXXXXXXXXXXXXX               XXXXXXX      P LDL +LM+G DD  SRSEWDDVLASIS P    D     S   PG TRG
Sbjct:  299 ELPRILECAVCFNPLAVAALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREAEGRRRSLRDAQRSAEDTIAEQAAELEKLREEAKSRRVGRRALRAQE-GSTSSMAEFGFGVLNGGNLTGGRRRDFFDPASQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGMPPSAAYGVVGPRGHAHRHPLSAAAAAAGSSGFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAGRSGSSGRSAGNSAAXXXXMGLGQPAA--AALKSVHGHGRAGGGGTNWRSSAYLHPGRSSLSGGAGXXXXGGRTRLHGSS-ARADPRGGTDVNVGSAAAGTPLDGGNLTNPVGGPGRSFTVQVPARSIRKTHGLSGLHGGGASASGGHAGSAAAVVGTSTSYPNPLANGLG---LAPPXXXXXXXXXXXXXXXXXXXXXXGDGLPFGGRTHGRAAXXXXXXXXXXXXAPMLDLGDLMAGHDDASSRSEWDDVLASISTPMQATDDARSNS---PGATRG 856

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig616.18.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig616.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5L7I3_9PHAE	1.170e-98	51.23	RING-type domain-containing protein n=2 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..72
None	No IPR available	COILS	Coil	Coil	coord: 446..489
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 446..465
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 573..598
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 683..720
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 755..871
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..140
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 358..408
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 343..443 e-value: 3.9E-11 score: 44.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 361..403 score: 10.659906

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig616	contig	P-littoralis_Contig616:72371..82006 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig616.18.1	mRNA_P-littoralis_Contig616.18.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig616 72100..83850 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig616.18.1 ID=prot_P-littoralis_Contig616.18.1|Name=mRNA_P-littoralis_Contig616.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=872bp
MEEMFALFGAGDDDDDDDVEGQAAYGGNGGTGLDMVGEVQVEEEVGEEEE
EENEDEEDAEDADLELSELELRPLKRSRSSRGGISQGALLFGGDDGRRSG
STGRGQVVGGHGEQEVIEIFSDDDEAQQQQEQQQQLLSGFHSDPVRPGRH
SVESCPGRQRQHNRSPAAASEGSSSSSSAAAAATGAGARSSRHSVRCADQ
QGGPKGYHPSAAPGRLMTLRMAAGGSTAGSHKPAGASSAAAGVSASNSHS
SVVVQSWISSSVLGVSEEGEEGKRSEEGKASREAGQADADRSGWLGAAVL
TTTNAGATSNIHQATGDDEESFATTMSSDQAGPLSGSATPGTTAAAAAAA
AAAEFPLNLECAMCFNPLAVAALFACGHGSCWECAHDWCSRDTSPTMDCP
TCHVSVPRNDFRRCVVLDQVVDRAVLAAGMDDDEWRARLQRGQQLAREAE
SNRRDSRDNQRSAEDTIAKQAAELEKLRKEAKSRVLERRSVRSYEQGFPP
SMADYGFRLMGGGARDVLDPASHKSAIEEITRFRHRRAEAGEPESSSRDA
RASGDAAVVAAAALGMPPSAAYGGARPRGPTHPGFGPAEGDPWFSLRSSQ
PGRYPSVAMSAGRMGREMLGRTHGLSRSAGNSAAGMGLVHPHLPGSALKS
SRELASGGSNWRSAYLEEDRLLSSGAGGARTLHHLSVGSRGSPVGHVRGG
AALERGPPVTRRGDPTAHASSSACFSSKRFGISSGAGSGGAFGGVGAAPS
ASSSSHPLVGGVGGGGGGGGGSSPSPSPQRFDGFGGQGQREHSSRGGGGG
GGVGHFVSRGRGNGRAEQPTPALDLEELMSGQDDPGSRSEWDDVLASISM
PHVGADRGMGRSEEPPGTTRG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING