mRNA_P-littoralis_Contig616.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig616.7.1
Unique NamemRNA_P-littoralis_Contig616.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig616.7.1 vs. uniprot
Match: D7FSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW1_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 8.230e-37
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 3 
Query:   63 MAEEDLYGDLDISEDALKIKGLEAELSASEALRRKVDGRLTAALKREKLVRDENEQLAKNISCLFETARAEIARKNKWIDELRQKLEAAEGKLRQQQGKSR 365
            MAEEDLYGDLD S DALKIKGLEAELS SE+LRR ++ RL +AL++EK++R ENEQLAKNISCLF TA+AEIARK  WI+ LRQ+L+ AEGKL+Q+ G  R
Sbjct:    1 MAEEDLYGDLDTSVDALKIKGLEAELSTSESLRRGLEERLASALRKEKVLRAENEQLAKNISCLFNTAKAEIARKETWIERLRQELQVAEGKLKQKDGARR 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig616.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSW1_ECTSI8.230e-3771.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig616contigP-littoralis_Contig616:28933..30892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI38540
Model size833
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000114
EggNOG OGs2E5RM@1|root,2SCIF@2759|Eukaryota,3QGK7@4776|Peronosporales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006580.1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.6217058-UTR-P-littoralis_Contig616:28932..293941680791283.6217058-UTR-P-littoralis_Contig616:28932..29394Pylaiella littoralis U1_48UTRP-littoralis_Contig616 28933..29394 -
1680791283.6686068-UTR-P-littoralis_Contig616:30830..308921680791283.6686068-UTR-P-littoralis_Contig616:30830..30892Pylaiella littoralis U1_48UTRP-littoralis_Contig616 30831..30892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.6369562-CDS-P-littoralis_Contig616:29394..295651680791283.6369562-CDS-P-littoralis_Contig616:29394..29565Pylaiella littoralis U1_48CDSP-littoralis_Contig616 29395..29565 -
1680791283.6468613-CDS-P-littoralis_Contig616:30383..304581680791283.6468613-CDS-P-littoralis_Contig616:30383..30458Pylaiella littoralis U1_48CDSP-littoralis_Contig616 30384..30458 -
1680791283.6561308-CDS-P-littoralis_Contig616:30767..308301680791283.6561308-CDS-P-littoralis_Contig616:30767..30830Pylaiella littoralis U1_48CDSP-littoralis_Contig616 30768..30830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig616.7.1prot_P-littoralis_Contig616.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig616 29395..30830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig616.7.1

>prot_P-littoralis_Contig616.7.1 ID=prot_P-littoralis_Contig616.7.1|Name=mRNA_P-littoralis_Contig616.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MAEEDLYGDLDISEDALKIKGLEAELSASEALRRKVDGRLTAALKREKLV
RDENEQLAKNISCLFETARAEIARKNKWIDELRQKLEAAEGKLRQQQGKS
RR*
back to top

mRNA from alignment at P-littoralis_Contig616:28933..30892-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig616.7.1 ID=mRNA_P-littoralis_Contig616.7.1|Name=mRNA_P-littoralis_Contig616.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1960bp|location=Sequence derived from alignment at P-littoralis_Contig616:28933..30892- (Pylaiella littoralis U1_48)
CCTGTATACACCGCTGTCCCTCTCTCCTTGGGGCATAACATCAACTCCCA
GCTGTTGGCAAGATGGCAGAAGAGGACTTGTACGGTGACCTTGACATCTC
GGAAGACGCTTTGAAGATCAAAGGAGTGAGCTTATATTTCCCATTCCTTG
CAGAACTACTGCTGCTTCAGGGTATCTCAATAAATATGAACTCATCTTTC
GTTGCCCAAATACGGCAGCACACCCCCTGTCTAGACTACCAGGTACCAGG
TATATCTTTACTTTGCCTACCATTGCTGCGGCTGTACAGCATGTGCACAC
GAGCGCCCTCTTTTATCGCGGCAATGAGGGTGTTTTGATCCTGACGCATG
TCGCGTCTCCTCACTGTTCCGAATTCATTGCGTGCTACTCTTTTCTTGCT
CGACCTTTTTGGGTTCATTGCTGTTCTCGATAAGTTGGAGGCTGAGCTGT
CCGCTTCAGAAGCCCTGCGGAGGAAAGTGGATGGACGACTAACAGCCGCA
CTCAAGAGGGTGAGCCGTGACCTGCTGTGCTGGGTGCGCACCCCTGAAGT
CCCTACAGTCTCTTGAATCCGAGCGTGATGTATGTAGGGCATGGTGTGGT
GTGCTACAGGCCATTTGCTAAACCAGCGGTATTACATATTGTACCAAATG
AAACGGTGGGTTTTGTGTTCACTGCTGTAGACAGAGAACGCGAAATGCCG
CTCTCCCTGTTCAACCCGCAAGTAGACGCGGTTAGCAGCACATCGGTACC
AGCGGTATGCCATACATTCACACAAGGCTGGTACAGGCCGGAAGCTACAG
CGTAGTACATCTCCAACCTTGTCGTGTTACAGACTTTTGTCGGAGAGAGA
TTGCCCCGCGGGCTGTATGGTCTATGCCTGGAATACGCTGGTTTCTTGCA
CCCCCGCTGTATTGACTCCTCTGCAACCGCCATGTTTTCAAAATGCAGCG
TGCAGGTACTGACGTTAGCCTGCTCAATCAAAGGTGTTCATGTTGAAGTT
TATGGTTATATGGAACCACCGGTATGTGTGTCGCTTGTGTTACTACAAAC
GTACTTTCCGTTACACCTAGCTATATAAAGCAGTATCGCGTACAAACTCG
TACTTTGTTTTCCCCCGTTCTCTCACTGCTGAACCAGGTGGGTGGCGGGT
TGGAGATTTTTTTGCGGTGAAGACGGTCAACACAGCAATGATCTGTTTGG
CTGTGCCTTATCTTGTTACAGAAGTGGGATCCCACTCTTTTGATATCTAC
TGTCCACTAGTTTGCAGCTAATTTGGCCGGGTCACGTTCTCACACTCCGA
TGGGCCCATCGTTGTTGTGCTTTGCAGGAAAAACTTGTGCGAGATGAAAA
CGAGCAGTTGGCGAAGAACATTTCATGTCTCTTCGAGACCGCCAGAGCTG
AGATTGCTAGGAAAAACAAATGGATAGATGAACTGCGGCAAAAGCTGGAA
GCCGCTGAGGGAAAACTAAGACAACAACAGGGCAAGTCTCGCCGATGATA
GCGGCACTCCGCGCCGTGCCCTTTGCCTTGTTACGTCATGCTACATGTAC
CGTCGTACCGATTATTTGGTAGTCGTGGTATGCCAGCATCGCCCACGGTA
GTGTACAGGGTCCCGAAGACTGCTCTGGTGAGAGAATCGGTGAGGAAAGC
AAGGTGATCGGGAGCTCAAGAGTTTGACTGGCTGAAGCGACTACGAGAAG
ACATCACAGCGTTCGGAATCGTTACCAACAAGAAGAGGTGGTGGGGAGCG
AGTGCCGAGAGAGCGGAGGAATGGTACGACAGGATCGAGAGGGGGTGCAA
CACATTATTGGACAGGGAAGCGCCAAAGAGACATGCCGACTGAAGAGGGA
GAGGGATGCAGTCGAGGGAGAGGCCACGGTAAAGGGACGGGGAGAATGGA
CGGCGAGGATAGACGAGAGGAGAACCACGGGGGCCCAAGAGGGGGGGGGC
ATACCCCCCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig616:28933..30892-

>mRNA_P-littoralis_Contig616.7.1 ID=mRNA_P-littoralis_Contig616.7.1|Name=mRNA_P-littoralis_Contig616.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig616:28933..30892- (Pylaiella littoralis U1_48)
ATGGCAGAAGAGGACTTGTACGGTGACCTTGACATCTCGGAAGACGCTTT
GAAGATCAAAGGATTGGAGGCTGAGCTGTCCGCTTCAGAAGCCCTGCGGA
GGAAAGTGGATGGACGACTAACAGCCGCACTCAAGAGGGAAAAACTTGTG
CGAGATGAAAACGAGCAGTTGGCGAAGAACATTTCATGTCTCTTCGAGAC
CGCCAGAGCTGAGATTGCTAGGAAAAACAAATGGATAGATGAACTGCGGC
AAAAGCTGGAAGCCGCTGAGGGAAAACTAAGACAACAACAGGGCAAGTCT
CGCCGATGA
back to top