mRNA_P-littoralis_Contig616.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig616.4.1
Unique NamemRNA_P-littoralis_Contig616.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: D7FSW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSW0_ECTSI)

HSP 1 Score: 645 bits (1664), Expect = 3.850e-222
Identity = 335/441 (75.96%), Postives = 362/441 (82.09%), Query Frame = 2 
Query:   71 MSGSTFEERKGLALASCFNDKRLHRRLIGHRARTFDFQFHPTEDAAVSASEDGTARVWDLSSGRCAKSLEGHNKKHEVLRACWAPPGTAGDSVSIATGSADGTVRLWGIPTGDGDGEKTGVDRYQSLKVVGQLRHRNQAKGLDGQVYSCQFIPDPASSTTANGPATTPQSSAGTMRLLTASDSSVHLWDVETRKRVATRALSKVGDHSIGGGRNPGDNCFVFDAKPRPGSGSSVLAVALSDGTVRVGDILREGEQTVVLQGTSNTHLTSLAWSDDGTILTSCGGNGAVTVWDTRTWTVRSVLSGHSRPVYGAAFYPGAPSGAAPS----------GQESSSSQLLLSWSSDETVCVWDAGRATGDAAAPLATLVVEEGFPVYSCSVSADARRFAVAGGGXGGEKAGFLGVPIKLVDLRDEAIEQGGKECDSHAQRGNSIDA 1363
            MS +TFEERK +ALA+CFNDKR HRRLIGHRARTFDFQFHPTEDAA+SASEDGTARVWDLSSG+CAKSLEGHNKKHEVLRACWAPPG A DSVS+ATGSADG VRLWGI  GDG  EK+GVDRYQSLKVVGQLRHRN+AKGLDGQVYSC FIPDP+           P SSA  M LLTASDSSVHLWDVETRKRV++RALSKVG HSIGG RNP D  FVFDAKPRPGSGSSVLAVALSDGTVRVGD+L++GE+  VL+G ++THLTSLAWSDDGT+L SCGGNG +TVWDTRTWT RSVL GHSRPVYGAAFY  A +G              GQ+    QLLLSWSSDETVC WD GRATGDA APLATL VEEGFPVYSCSVSAD RRFA+AGGG   + AGFLGVPIKLVDL DEA  + GKE  S A  G++  A
Sbjct:    1 MSSTTFEERKSVALAACFNDKRCHRRLIGHRARTFDFQFHPTEDAAISASEDGTARVWDLSSGKCAKSLEGHNKKHEVLRACWAPPGAANDSVSVATGSADGIVRLWGIRHGDGRDEKSGVDRYQSLKVVGQLRHRNEAKGLDGQVYSCHFIPDPSGGA--------PPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHSIGGERNPDDLAFVFDAKPRPGSGSSVLAVALSDGTVRVGDVLQQGEKAAVLRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTARSVLWGHSRPVYGAAFYSCAGNGXXXXXXXXXXXXXXGQDCPP-QLLLSWSSDETVCAWDTGRATGDATAPLATLSVEEGFPVYSCSVSADGRRFALAGGGGDEKSAGFLGVPIKLVDLSDEARAKDGKE--SFADNGSNEPA 430
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BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A835YNR1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR1_9STRA)

HSP 1 Score: 187 bits (474), Expect = 6.940e-47
Identity = 154/413 (37.29%), Postives = 192/413 (46.49%), Query Frame = 2 
Query:  110 LASCFNDKRLHRRLIGHRARTFDFQFHPT-EDAAVSASEDGTARVWDLSSGRCAKSLEGHNKKHEVLRACWAPPGTAGDSVSIATGSADGTVRLWGIPTGDGDGEKTGVDRYQS----LKVVGQLRHRNQAKGLDGQVYSCQFIPDPASSTTANGPATTPQSSAGTM-----------------------------RLLTASDSSVHLWDVETRKRVATRALSKVGDHSIGGG-RNPGDNCFVFDAKPRPGSGSS-----VLAVALSDGTVRVGDILREGEQTVVLQGTSNT----------------HLTSLAWSDDGTILTSCGGNGAVTVWDTRTWTVRSVLSGHSRPV-------------YGAAFYPGAPSGAAPSGQE--SSSSQLLLSWSSDETVCVWDAGRATGD 1135
            LA+ + D+   ++L+GH+ R FDFQFHPT    A S SEDGT RVWD+  G    S +G   K EVLR CWAPPGT G  + +A+GSADG VRLW +        +    R  S    L+ V  L  +  A G DGQVY+ QFI        A+G      SS+G                                L+ A+D +V LWDV T       A S    H+ GG  RNP +  FVFDAK   GSG S      LA ALSDGTVRV  +  E   + +    S +                HLT++AW+ DG+ L +CG    V VWD RTWT R+ L   +  V             YG    P A       G    +S+ QLLLSWSSD T+  WD G A  D
Sbjct:   24 LATRWRDQSRRKQLLGHKGRVFDFQFHPTVHSRAASCSEDGTVRVWDVQRGVSIASAKG--SKDEVLRICWAPPGTPG--IDLASGSADGLVRLWAMSAATSTATRGAPGRDGSSAAALRCVKTLDVKAAAGG-DGQVYALQFIG-------ADGGG----SSSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLMVAADDAVSLWDVGTGVVTRRWAFSSSAQHAHGGAARNPDNQVFVFDAKVCCGSGGSGGGDGTLAAALSDGTVRVQPLDSELPASTLHPCGSGSNSGXXXXXXXXXXXXAHLTAVAWAPDGSALAACGXXXGVEVWDARTWTRRAALQAQALAVSVRERLRCAANTQYGD-HLPAAAHSRPVYGVMFCASAPQLLLSWSSDGTLKAWDWGAAAND 419
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BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A6H5JPY3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY3_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 6.010e-41
Identity = 114/277 (41.16%), Postives = 148/277 (53.43%), Query Frame = 1 
Query: 1399 SIEKMMSIIARVAGRFGLLVSESKTEIMCMLARGMKACSFTAKAAGMVYNQT*TFVYLGDKICEDGSVDHEINHGGQRAHDGFQRNSRQCTTVVWHSLNLRRILQAEVKVKVLLQTGVVETLLYIKGALRGS*GQSTTVSFGQPTPLPPSLCIGSEKRERTNRPMPHTEALTKACQNESIEATVRKRRP*FAGFVAHMGDDGLPKTVILAELVGVARY-SGQAVEWLK*-------QQGWKSSAERAEN*YD---------RGWGVMIHGRLAQRTG 2178
            S+EKMMS+I RVAG FGL+VSE KTEIMCML +G++   FT  AAG  Y QT  FVYLG  I  DG  D EI     RA   ++RNS         S+  RR    ++K++ LLQ  VVETLLY   +   +    T ++      L  + CIG  KR+R++RP+ + +AL +A   E+IEATVRKRR  FAGFV  M D  LPK ++L  + G   Y  GQ  +W+         Q G +      E             R WG M+H  +AQ  G
Sbjct:   16 SLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSA--------SMYDRRRADRQLKIR-LLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFL--TRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLRAMAGGVGYRGGQESDWVSRLGGPRGLQHGRRKGRGEMERERQGLGGVVQQGREWGGMVHEEMAQAGG 281
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BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.480e-40
Identity = 111/261 (42.53%), Postives = 144/261 (55.17%), Query Frame = 1 
Query: 1399 SIEKMMSIIARVAGRFGLLVSESKTEIMCMLARGMKACSFTAKAAGMVYNQT*TFVYLGDKICEDGSVDHEINHGGQRAHDGFQRNSRQCTTVVWHSLNLRRILQAEVKVKVLLQTGVVETLLYIKGALRGS*GQSTTVSFGQPTPLPPSLCIGSEKRERTNRPMPHTEALTKACQNESIEATVRKRRP*FAGFVAHMGDDGLPKTVILAELVGVARY-SGQAVEWL-------------K*QQG--WKSSAERAEN*YDR 2133
            S+EKMMSII RVAG FGL+VSE KTEIMCML +G+    F   AAG  Y QT  FVYLG  IC DG VD EI     RA   ++RNS         S+  R+    ++K++ LLQ  VV+TLLY  G    S                 + CIG  KR+R++RP+ + +AL +A   E+IEATVRKRR  FAGFV  M D+ LPK ++L  + G   Y  GQ  +W+             + ++G  WK SA+  E  YD+
Sbjct:   27 SLEKMMSIIVRVAGLFGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNST--------SMYDRKRANRQLKIR-LLQAEVVQTLLY--GCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDK 276
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BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 8.040e-40
Identity = 98/197 (49.75%), Postives = 121/197 (61.42%), Query Frame = 1 
Query: 1468 KTEIMCMLARGMKACSFTAKAAGMVYNQT*TFVYLGDKICEDGSVDHEINHGGQRAHDGFQRNSRQCTTVVWHSLNLR-RILQAEVKVKVLLQTGVVETLLYIKGALRGS*GQSTTVSFGQPTPLPPSLCIGSEKRERTNRPMPHTEALTKACQNESIEATVRKRRP*FAGFVAHMGDDGLPKTVILAELVGVARYS 2055
            KTE MCMLA+GM+ACSFT  A GMV+ Q   FVYLG KIC+DGS++ EINH  QRAH  F+RNS+         L L+ R+LQAE          VVETLLY  G +  +   +               CIG +KRER +RP+ + +AL  A  +ES+EATVRKRR  FAGFVA M D+ LPK  +L EL G ARY+
Sbjct:   97 KTETMCMLAKGMEACSFTIDAVGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAE----------VVETLLY--GCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGARYN 281
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BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A6H5KTP5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP5_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.370e-40
Identity = 104/227 (45.81%), Postives = 137/227 (60.35%), Query Frame = 1 
Query: 1399 SIEKMMSIIARVAGRFGLLVSESKTEIMCMLARGMKACSFTAKAAGMVYNQT*TFVYLGDKICEDGSVDHEINHGGQRAHDGFQRNSRQCTTVVWHSLNLRRILQAEVKVKVLLQTGVVETLLYIKGALRGS*GQSTTVSFGQPTPLPPSLCIGSEKRERTNRPMPHTEALTKACQNESIEATVRKRRP*FAGFVAHMGDDGLPKTVILAELVGVARY-SGQAVEWL 2076
            S+EKMMS+I RVAG FGL+VSE KTEIMCML +G++   FT  AAG  Y QT  FVYLG  I  DG  D EI     RA   ++RNS         S+  RR    ++K++ LLQ  VVETLLY   +L  +    T ++      L  + CIG  KR+R++RP+ + +AL +A   E+IEATVRKRR  FAGFV  M D+ LPK ++L  + G   Y  GQ ++W+
Sbjct:  373 SLEKMMSVIVRVAGPFGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSA--------SMYDRRRAHRQLKIR-LLQADVVETLLYGCASLSPTAEHYTKLNGTHRQYL--TRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQEIDWV 588
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BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.380e-39
Identity = 109/261 (41.76%), Postives = 145/261 (55.56%), Query Frame = 1 
Query: 1399 SIEKMMSIIARVAGRFGLLVSESKTEIMCMLARGMKACSFTAKAAGMVYNQT*TFVYLGDKICEDGSVDHEINHGGQRAHDGFQRNSRQCTTVVWHSLNLRRILQAEVKVKVLLQTGVVETLLYIKGALRGS*GQSTTVSFGQPTPLPPSLCIGSEKRERTNRPMPHTEALTKACQNESIEATVRKRRP*FAGFVAHMGDDGLPKTVILAELVGVARY-SGQAVEWL---------------K*QQGWKSSAERAEN*YDR 2133
            S++KMMS+I RVAG FGL+VSE KTEIMCML +G++   FT  AAG  Y QT  FVYLG  I  DG  D EI     RA   ++RNS         S+  RR    ++K++ LLQ  VVETLLY   +   +    T ++      L  + CIG  KR+R++RP+ + +AL +A   E+IEATVRKRR  FAGFV  M D  LPK ++L  + G   Y  GQ  +W+               K    WK SA+ +E  Y++
Sbjct:   16 SLQKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRIISADGKADREITSRSCRAWKCYRRNSA--------SMYDRRRADRQLKIR-LLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFL--TRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQGSDWVSRLGEYLVAFNMGDEKEGGKWKESAKDSEVWYNK 265
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BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A6H5K1C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C5_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.700e-39
Identity = 108/257 (42.02%), Postives = 142/257 (55.25%), Query Frame = 1 
Query: 1411 MMSIIARVAGRFGLLVSESKTEIMCMLARGMKACSFTAKAAGMVYNQT*TFVYLGDKICEDGSVDHEINHGGQRAHDGFQRNSRQCTTVVWHSLNLRRILQAEVKVKVLLQTGVVETLLYIKGALRGS*GQSTTVSFGQPTPLPPSLCIGSEKRERTNRPMPHTEALTKACQNESIEATVRKRRP*FAGFVAHMGDDGLPKTVILAELVGVARY-SGQAVEWL---------------K*QQGWKSSAERAEN*YDR 2133
            MMS+I RVAG FGL+VSE KTEIMCML +G++   FT  AAG  Y QT  FVYLG  I  DG  D EI     RA   ++RNS         S+  RR    ++K++ LLQ  VVETLLY   + R +    T ++      L  S CIG  KR+R++RP+ + +AL +A   E+IEATVRKRR  FAGFV  M D+ LP  ++L  + G   Y  GQ  +W+               K    WK SA+ +E  Y++
Sbjct:    1 MMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSA--------SMYDRRRANRQLKIR-LLQAEVVETLLYGCASWRLTAEHDTKLNGTHHQFL--SRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPTRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNK 246
[Close]
BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.070e-39
Identity = 113/261 (43.30%), Postives = 147/261 (56.32%), Query Frame = 1 
Query: 1399 SIEKMMSIIARVAGRFGLLVSESKTEIMCMLARGMKACSFTAKAAGMVYNQT*TFVYLGDKICEDGSVDHEINHGGQRAHDGFQRNSRQCTTVVWHSLNLRRILQAEVKVKVLLQTGVVETLLYIKGALRGS*GQSTTVSFGQPTPLPPSLCIGSEKRERTNRPMPHTEALTKACQNESIEATVRKRRP*FAGFVAHMGDDGLPKTVILAELVGVARY-SGQAVEWL-------------K*QQG--WKSSAERAEN*YDR 2133
            S+EKMMS+I RVAG FGL+VSE KTEIMCML +G++   FT  AAG  Y QT  FVYLG  I  DG  D EI     RA   ++RNS         S+  RR    ++K++ LLQ  VVETLLY   A  G   +  T   G       + CIG  KR+R++RP+ + +AL +A   E+IEATVRKRR  FAGFV  M D+ LPK ++L  + G   Y  GQ  +W+             + ++G  WK SA+  E  YD+
Sbjct:  206 SLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSA--------SMYDRRRADRQLKIR-LLQAKVVETLLY-GCASWGLTAEHYTKLNGTHRQFL-TRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDK 455
[Close]
BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Match: A0A6H5K8E6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E6_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 4.380e-39
Identity = 102/225 (45.33%), Postives = 132/225 (58.67%), Query Frame = 1 
Query: 1399 SIEKMMSIIARVAGRFGLLVSESKTEIMCMLARGMKACSFTAKAAGMVYNQT*TFVYLGDKICEDGSVDHEINHGGQRAHDGFQRNSRQCTTVVWHSLNLRRILQAEVKVKVLLQTGVVETLLYIKGALRGS*GQSTTVSFGQPTPLPPSLCIGSEKRERTNRPMPHTEALTKACQNESIEATVRKRRP*FAGFVAHMGDDGLPKTVILAELVGVARYSGQAVEW 2073
            S+EKMMS+I R AG FG++VSE  TEIMCML +G++   FT  AAG  YNQT  FVYLG  I  DG VD EI     RA   ++RNS         S+  RR    ++K++ LLQ  VVETLLY   +   +    T ++      L  + CIG  KR+R++RP+ + +AL +A   E+IEATVRKRR  FAGFV  MGD GLPK ++L  +     Y G    W
Sbjct:  320 SLEKMMSVIVRAAGLFGVMVSEPTTEIMCMLPKGIEERPFTVSAAGQTYNQTDRFVYLGRTISADGKVDREITSRSCRAWKCYRRNSA--------SMYDRRRADRQLKIR-LLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFL--TRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMGDSGLPKRMLLGAMAEGVGYRGGQATW 533
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig616.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSW0_ECTSI3.850e-22275.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNR1_9STRA6.940e-4737.29WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A6H5JPY3_9PHAE6.010e-4141.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KB07_9PHAE1.480e-4042.53Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K2J8_9PHAE8.040e-4049.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP5_9PHAE8.370e-4045.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCS2_9PHAE1.380e-3941.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1C5_9PHAE1.700e-3942.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD24_9PHAE4.070e-3943.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8E6_9PHAE4.380e-3945.33Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig616contigP-littoralis_Contig616:18283..25767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSW0
PFAMsBromodomain,WD40
Model size2898
Max annot lvl2759|Eukaryota
KEGG koko:K01265,ko:K11797
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.09e-231
EggNOG OGsCOG2319@1|root,KOG0263@2759|Eukaryota
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-27_006570.1
EC3.4.11.18
Descriptiontranscription initiation from RNA polymerase II promoter
Cds size1305
COG categoryQ
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.5482187-UTR-P-littoralis_Contig616:18282..183521680791283.5482187-UTR-P-littoralis_Contig616:18282..18352Pylaiella littoralis U1_48UTRP-littoralis_Contig616 18283..18352 +
1680791283.5849388-UTR-P-littoralis_Contig616:24244..257671680791283.5849388-UTR-P-littoralis_Contig616:24244..25767Pylaiella littoralis U1_48UTRP-littoralis_Contig616 24245..25767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.5646646-CDS-P-littoralis_Contig616:18352..184661680791283.5646646-CDS-P-littoralis_Contig616:18352..18466Pylaiella littoralis U1_48CDSP-littoralis_Contig616 18353..18466 +
1680791283.5757813-CDS-P-littoralis_Contig616:23053..242441680791283.5757813-CDS-P-littoralis_Contig616:23053..24244Pylaiella littoralis U1_48CDSP-littoralis_Contig616 23054..24244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig616.4.1prot_P-littoralis_Contig616.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig616 18353..24244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig616.4.1

>prot_P-littoralis_Contig616.4.1 ID=prot_P-littoralis_Contig616.4.1|Name=mRNA_P-littoralis_Contig616.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=435bp
MSGSTFEERKGLALASCFNDKRLHRRLIGHRARTFDFQFHPTEDAAVSAS
EDGTARVWDLSSGRCAKSLEGHNKKHEVLRACWAPPGTAGDSVSIATGSA
DGTVRLWGIPTGDGDGEKTGVDRYQSLKVVGQLRHRNQAKGLDGQVYSCQ
FIPDPASSTTANGPATTPQSSAGTMRLLTASDSSVHLWDVETRKRVATRA
LSKVGDHSIGGGRNPGDNCFVFDAKPRPGSGSSVLAVALSDGTVRVGDIL
REGEQTVVLQGTSNTHLTSLAWSDDGTILTSCGGNGAVTVWDTRTWTVRS
VLSGHSRPVYGAAFYPGAPSGAAPSGQESSSSQLLLSWSSDETVCVWDAG
RATGDAAAPLATLVVEEGFPVYSCSVSADARRFAVAGGGGGGEKAGFLGV
PIKLVDLRDEAIEQGGKECDSHAQRGNSIDAPAV*
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mRNA from alignment at P-littoralis_Contig616:18283..25767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig616.4.1 ID=mRNA_P-littoralis_Contig616.4.1|Name=mRNA_P-littoralis_Contig616.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7485bp|location=Sequence derived from alignment at P-littoralis_Contig616:18283..25767+ (Pylaiella littoralis U1_48)
AAGCGCAGCATCGAAATACCCCGTACTGCTGTATCAGCAGAGAGACGCCG
CCAGACCCGTGACGAGCGCCATGTCAGGGTCTACTTTCGAAGAGCGTAAA
GGTCTGGCTCTGGCTTCCTGCTTCAACGACAAGCGTCTTCACCGACGCCT
TATCGGTCACCGAGCCCGCACCTTCGATTTTCAGGTATGTGCAACAAGGA
CTCCGAAACAAGTGCACTTCGAACTTCGAATTTTACTGCTTCTGTGGAGT
AAGTGTACACTGGTCAAGAGGTACTCGCGCTGCTGCAGGATAGCTGGTAC
GTACCAGGTGTTATACCGACCATTCACACCACTGATGATTCGCATCGTGT
ACCACATCACATCACATGGTACCGGTATCTGACATGATCCATACACAGCA
GAAAAACAGCATTCATCGCGTTAGATACCACACCCCCTGGTCCTGTTGAT
TTGTCGTCCCTCACACCAAAAAATATTAATCCCTACTAATTCAGCAACAA
ACTGAAAACAAACCAAACATCCAAACACCCCTCCATACCAACATTACACT
CTACACTATAATGTGATTGATTACCTCAGGGAAGCTGCAACCACGATAGA
TTACCTGTAAACAGGTATATTGTGTAGCACTTTGTGCTCGTTGCGCTAAA
ATCATTTACTTGTTACAAGTGAAAAACGATCATGATGTGTCGCGTGTAAA
CGAAAAACATTGACGAGGGTTAATAATAATGATGACGGTTGAACCCCCCT
TTTTTTATTAACTGACAAACACATCAATGTGTTCGCCTCTCTCCAGACAA
GGATCTGGAACAGATATTGCAGCGAACACAAAGAATGAGGCACATCTACC
AGTGTTTCTATATCTCATCAGATAATGTACCGTTGCAGCTCCCCCTGAGG
GTATCAGGCTCAACAAGACAATTTGGTGGTCGTCTTGTGTGACACACGTT
ACATCATCTGTTGAGTGTTTGCAATTCTATGTTTGTGATGTTTGCATTAT
CCTTGGCATAGTACTTCTGGTGTTTCATTTTTCTGGTTATGCGAATCTCG
AAGTATTTTGTGTCCTTGCAGAAACACTTTCCGCTCACTTCATAGGGCAC
CAAGATTCAGATCTTCCCGTCCTACGGTTCATACAAGTATTAGACAAAGT
GGATGGTATGACGCCTTCTGCCAGCCGACACCATCGCCCTGGCACTGCTG
TCCGTACTCTCTGTGTGCTGTGCGCCTAATCATTCCGTTGTGGCATTCCG
TTGTGTGGCACTCTGCAGGCGCTATTTCCGCACTATTTTCGTCCCTCGTG
TCGCATATAAAGATCGCTGAGAGAAGCGCACAACCCTTGATACGGGCTTC
TTTGAGAGCCTCGGATCGTCTTGTTGTGTGTCGACGCTTTCAACCACGTG
TATTATTTTTGTTACTTTGTGGTCTCTCTGCTACACCGAAAACAACAAGA
ACAGCTACTGTGTACCGCTGTATGTATGATACAACGAAGCAGTCGTTGGT
TCTTCGTTTGTTCAAGTGGTTGGTGATTGTTGGCCGTAGTGGGCCAACGA
CTCTCTCTCTGTTGGTACTGTTAATGTGTTATTGCATGCGATTGTTGTTG
AGAGCGGGAAAAGTCAGTACGGAGGGTTGGAGGCAGGTCCGTCGCGGGTG
GAATATTAATATTGCCGGTCACCGTTGTTTGTTCAGGGCGGAAAGATCTG
CATTTTGGCGCCCTTTGAGCAGAAAGTGGTTCTGCGGGAGAAATGGCCGG
TGTAAGGGTGTCATTTCCCGACACAATAGGGTTATTTATGAGCTAGGTCA
TGATTTTGGAGGAAAGCAGCCGCCGCAGGGTACATATGATACCCCACCCT
TTTTCCGGCACCGCAGAGTGAAAGTGAGTGTCAGCCAATGAGCTTGGCTC
ATTCCATGGTGAGAAAAAGTACGAACCCTGCTGTGTCGCAAAATGACCAG
GGTATACCCTGCGGTGTAGTTTCCCCGAAAGAGAAGCTGCCACAGAATAC
TCTCGTATCTACTTGTATGATATGATGTGAGAGCATTGATCTGTGGTGCC
CAGGGCGCGTTTCACAGAATACTCTCGTATCTACTTGTATGATATGATGT
GAGAGCATTGATCTGTGGTGCCCAGGGCGCGTTCCAATTTTTTTCAAGGT
ATCGTATGATGTACAGCAAGGCAGTAAAGTTGGCGTGGCAAAGAGTGTTC
GGCGTACGTGGTGGCGGTGACTCGTGTAGGTCAAGGTGGGTTTATTTTCA
GGTGCCGCTGGTTTGTAGCTGTGGGGCGGATTGTTTGATGGGGCGCAGGG
GAGAAAAAGAGTCGTAGTCGTCGTGGGAGAATAGCTGTGTGTCCCGAACA
CACATCCTGCGTGACCGGTTTTGAAAGCTCTCTGACTTCGTTTCTACAGA
ATATTGTCTGCAGCAGTAGATCGTCTATGATAGAGAGGATGAGAACACGG
GACTGACATAATTTTTGTTTTTTTCTCCTGCAAACACGTCAACGTGTGTT
CGCCTCAGACGACGGTCTGGGGTAGAAAAGCAACAAACACAAAGAATACA
ACACATGTTCTCTTGAGAAACATAAAGAACGAGGTCGATCGTTCACTCCA
CAATGAAGAAAGAGTGCCGGCATCAAACGGTTCGTTCTCGGGCAAGCCTC
GAAAGGTTGTCTCAATGCCCGCCCTTTGGGCACCGACACTCTTTCTCCTG
TACGAGAAGTCAGTCTTGGGGGTGTGACATATCAAATTGTACCTTGTACG
GACTACATACCGACCTCTGTTAGGAGTCCAATCGGGGGCTCTGGGTCAAA
GGCGACTCCTGCTGTTGTCGGAGGGATTTAAGCCCCGATAATTAGTGTCG
TTTTTGGAAAAAAGTAGGGTGTCCGGGGTATCGGCGTGAACGCCACGAAT
CCGACGCAAAAAATATTTTTTAAAACGACGGTAGAGGAAAAAAAAAGGAA
CAAAGACGGCACCCAGCAGAAGTTGCGGGAGAAAAATGTTCGACTTTCCC
GGTATGGTGCGGAAATCCGGGGACGGTTCGGGACGATTTCCAAGCGTCCC
CTGGCCATCACGGGAGCATTTTTTGCACCAGTCTCTTCAAATCGTGCTCC
CCTAGCATGGATAAATTTAAAAACGGTAGATTTGTCCCATTTTTCAAAAG
TGAACTTTACGCCGGTTTTGTCCAAAGGTGACCTTTTGAAATGATTAAGA
TGAGACGACAACACACACATATATAATATCACGTCGTGATACACTTTAAC
AGCAGTACCACTCCGGCCGAGAACATGAGCCACACGTGGACAATCGGCGG
CATAAATCAGTCAGTTTTTACTTATTTTATGAACGGTTTTTTACATCGCA
TTCGGCGCATTCTCGCGGAACTGCCAAAGGCGTTGTTTTTTCAAATCGCG
ACGATTGTCCTTCACAACAGCATCTGAAGGAGAGGCTTATAAAGCTCTCA
CAGGGCAACCGCCGGTTTAAGCGCTTCCCGTCGTCTGATTGACATGCCAG
CCGCTGGAGTTGTTGCCAAGAAGGCGTCCAGAGAGAATCTGAACAGTTTT
TTTGTTTACCCCGCCATGGGCGGGCTTCTCGAGGGTAGCCATCAGGGGCT
CGAGGCCAAAGACGACTTTCGGATAGTTTAGCTGCGGAAATTGAAATAAA
CGAAAATCGAGCGTTTTTCAGACGTTTTCGCGAACGCCACAAATCCAATG
CAAAAAGCCGTTTGAAAATAAACTTCACCCAGCAGAAGTTAAGCAGGAAA
AAGTGAAATTTCTCAGTCTGATGAAGAAATCCCCCGGGGACAAATTCCAG
GCGGCCCCTGGACACAATGGAGATTTTTTCGCTCGACTGACCCCTGGTTG
TATTCAGGTATCAAATACTGCCTAAAGTTTTAATTCTTGCTTTGGAACTG
CACAATGGTCGCAATGTTTCAGATGTGGCTTATATTTCCGAATTTCCAAA
TGTGGCTTATATTCTCGGCCGGAGTGGTATGTGATATCTTGATATAAATA
TCCGTAGAGTACTTACTGCTGCTGCCAGCCAGTATTTCTCTCGTTGTATG
ATGTACAAATGGCCGTACAATAGTACGAAAGTAGAACGTAATTGCTTGGC
GTGTGAAACGACAACAATGACTGAGGATGCCCGGTAGAGCAATATTTGAA
TTTAGAAGCGCAGCTGCTGCTTGTTGCTCAGGCTCGGCTTGAAACCGACC
GCTTTGCCGACGCCGCACGATACTTACGCACAGCTGTAACAATACGCACG
TGCCTGCTCCTCCTACCTGTTGTTTGTTGCACAGGTATGGTGTTCGACCT
TTCGCAGATGCGGTAAGAATAGTTGCAGCAGTTCGTTCCACATCTGAAGC
AAAGCGAGGAAGGAGGGTGTTCGATTCCCAGCATACACATGTTCTTCTCC
TTAAAAAGAACCAGCGAGATCATGCTCTCTTTCTCAAGAGCTACCATGCA
CCACAAATAGCAGCGCGCGGTCAGAGGGCAAATCTCCGAAGATCGATGAC
AGTAGCAATTCGAACCCCTGAAAGCCTCTCTGGTGGAGAGACTTGTTCTG
TACTCGTACGGTACACCGCATGGTCATCGGCTGACTGTTTGACACAGCAG
TGGCAACAATTCTAACCGACGGCACCAACCCCGTATGCGAGTTTGTATCC
TTGTATCTAAACATGCAGACCATTGTAAATACCAAAAACAGCGCTGAGCA
CCTCGTAATCGACGGCAACAAATTTCACCTGCTGTATACCCCTCCCGCCC
TGTCCGTAATCACCGAAACAGTTCCACCCAACGGAAGATGCGGCTGTCTC
CGCGAGCGAGGACGGGACGGCCCGCGTGTGGGACCTCAGCAGCGGAAGGT
GCGCCAAGTCTCTCGAAGGCCACAACAAGAAGCACGAGGTGTTGCGGGCG
TGCTGGGCTCCTCCGGGAACAGCGGGCGACTCGGTCTCGATTGCAACCGG
CTCAGCCGACGGCACCGTGAGGCTGTGGGGTATTCCAACCGGGGACGGCG
ACGGCGAGAAGACCGGGGTGGACCGGTATCAGTCCCTCAAAGTCGTCGGG
CAGCTGCGACACCGCAACCAGGCGAAAGGGTTGGACGGCCAGGTGTACTC
TTGCCAGTTCATTCCGGACCCTGCCAGCAGCACTACTGCCAATGGTCCCG
CGACAACACCACAGTCGAGCGCGGGAACGATGCGTCTGCTCACAGCCAGC
GATAGCAGCGTGCACCTGTGGGACGTGGAGACGCGCAAGCGAGTCGCGAC
CCGAGCGCTATCTAAAGTGGGCGACCACTCCATCGGCGGGGGGCGAAATC
CAGGCGACAATTGTTTCGTTTTCGACGCTAAGCCTCGCCCGGGGTCGGGC
AGCTCCGTCCTAGCCGTAGCGCTTAGCGACGGCACGGTGAGGGTCGGCGA
CATCCTGCGAGAGGGCGAGCAAACCGTGGTGCTACAGGGAACCTCGAACA
CCCACCTGACTAGCCTGGCGTGGTCGGATGACGGGACGATTCTGACGTCC
TGCGGGGGGAACGGGGCGGTTACGGTGTGGGACACGAGAACTTGGACGGT
AAGGTCGGTCTTGTCCGGCCACTCTAGGCCCGTGTACGGGGCGGCCTTTT
ACCCCGGTGCCCCCAGCGGAGCAGCACCATCAGGACAAGAATCGAGCTCG
TCGCAGCTCTTGCTGTCGTGGTCTAGTGACGAAACTGTCTGCGTGTGGGA
CGCCGGTAGAGCGACCGGAGACGCGGCAGCCCCCCTAGCTACTCTCGTCG
TGGAGGAAGGGTTTCCTGTGTACAGCTGCTCTGTCTCCGCGGATGCACGG
AGGTTCGCCGTGGCTGGAGGAGGGGGCGGTGGAGAGAAGGCGGGGTTCCT
CGGGGTGCCGATCAAGCTCGTGGATCTCCGCGACGAAGCGATAGAGCAAG
GCGGGAAGGAATGCGATTCCCACGCCCAGAGGGGAAATAGTATTGACGCA
CCAGCAGTCTAACACTCTTCTCACCGGGAAGCCTAAGCATCGAGAAGATG
ATGTCGATAATTGCTCGCGTCGCCGGGCGGTTCGGGCTGTTGGTGTCAGA
ATCCAAGACGGAGATCATGTGCATGCTGGCCAGGGGCATGAAGGCGTGCT
CGTTCACGGCCAAGGCTGCCGGCATGGTGTACAACCAAACGTAAACGTTT
GTGTATCTCGGGGATAAGATTTGCGAGGACGGGAGCGTCGACCATGAGAT
CAACCACGGAGGGCAGCGAGCGCACGACGGCTTCCAGCGCAATAGCAGGC
AATGCACGACCGTCGTATGGCACTCCTTGAACTTAAGGCGAATCCTACAG
GCCGAAGTCAAAGTCAAGGTACTCCTCCAAACCGGAGTTGTGGAGACCCT
ACTCTACATCAAGGGTGCGTTACGTGGAAGCTGAGGCCAATCCACCACGG
TGAGCTTCGGACAGCCCACTCCTCTTCCTCCTTCGCTGTGCATCGGATCG
GAGAAGAGGGAAAGGACGAACCGCCCCATGCCCCACACCGAAGCCCTCAC
CAAAGCGTGTCAGAACGAGAGCATCGAAGCCACCGTGCGCAAGCGGCGAC
CATGATTTGCAGGATTCGTCGCGCATATGGGAGATGACGGGCTCCCGAAG
ACTGTTATACTGGCAGAGTTGGTGGGGGTAGCGAGGTACTCGGGACAAGC
TGTTGAGTGGCTGAAGTAACAACAGGGGTGGAAATCGAGTGCCGAGAGAG
CGGAGAATTGATACGATCGAGGTTGGGGTGTAATGATTCACGGACGACTA
GCACAAAGAACAGGGTCCCGAACACCAAAGGAAAATGCCGACTGAAGAGG
GGAAGGGACGTAGTCGAGGGACAGGCCACAGCCAAGAGAGGAAGGACGGA
CGGCGAGGATAGACGATAGGAGATCTTCACAGGGACCCAAGGGGCGGAGG
GTATGCCCTCCGACCCAGGGGGTGGGGAGAGTCCCCCACGTAGCAGTGTG
GTGGGGCTATAAACGCTGTAGGGCACGAGTTTCGGAGTACTGTAGTGGTG
TTGCTGCGAAACAGTAGGGCAGAAGAAGTAACCCAAGCTGCGGGGTGGTG
CGAGAAAAAAAGCCGTCGGGCAGTAATCGCGAAGAGGTGTTGCTGCTGCT
AAAGATGTGAGGCAGAACGAGAGCGTGGTGGTACGAGTAGCAGGAGGCGC
GAGTGCGTGGGAGGAGAACAAGCGTGAGCAGGCAGGATTTTTGGCGAGAC
ATTGTCGTGACCGAGTGCGCGTCATTTTCTCCCCTTTGCTTTGTTCTGTT
CCCCTCCCTCCTTTTTCGTTGGCTCTTTTTCGTCTCCTTGCCCTTAATCT
CGAAATGTATTTGTTGTCGTATCTTCTTCCCGCACTGCAGTCATCCCCTT
TTTTCGGCCTTAAGTGTCCGTAGTATTTTATTTTCTGGCCACGACAGAAC
ATACCCCTTGCAGGGCTAAACCTATCCCTGTTCTTTTCTTTTTGTGCATG
GCCTCTTTGTATTCATGGTTGTTAATTTTTCCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig616:18283..25767+

>mRNA_P-littoralis_Contig616.4.1 ID=mRNA_P-littoralis_Contig616.4.1|Name=mRNA_P-littoralis_Contig616.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1305bp|location=Sequence derived from alignment at P-littoralis_Contig616:18283..25767+ (Pylaiella littoralis U1_48)
ATGTCAGGGTCTACTTTCGAAGAGCGTAAAGGTCTGGCTCTGGCTTCCTG
CTTCAACGACAAGCGTCTTCACCGACGCCTTATCGGTCACCGAGCCCGCA
CCTTCGATTTTCAGTTCCACCCAACGGAAGATGCGGCTGTCTCCGCGAGC
GAGGACGGGACGGCCCGCGTGTGGGACCTCAGCAGCGGAAGGTGCGCCAA
GTCTCTCGAAGGCCACAACAAGAAGCACGAGGTGTTGCGGGCGTGCTGGG
CTCCTCCGGGAACAGCGGGCGACTCGGTCTCGATTGCAACCGGCTCAGCC
GACGGCACCGTGAGGCTGTGGGGTATTCCAACCGGGGACGGCGACGGCGA
GAAGACCGGGGTGGACCGGTATCAGTCCCTCAAAGTCGTCGGGCAGCTGC
GACACCGCAACCAGGCGAAAGGGTTGGACGGCCAGGTGTACTCTTGCCAG
TTCATTCCGGACCCTGCCAGCAGCACTACTGCCAATGGTCCCGCGACAAC
ACCACAGTCGAGCGCGGGAACGATGCGTCTGCTCACAGCCAGCGATAGCA
GCGTGCACCTGTGGGACGTGGAGACGCGCAAGCGAGTCGCGACCCGAGCG
CTATCTAAAGTGGGCGACCACTCCATCGGCGGGGGGCGAAATCCAGGCGA
CAATTGTTTCGTTTTCGACGCTAAGCCTCGCCCGGGGTCGGGCAGCTCCG
TCCTAGCCGTAGCGCTTAGCGACGGCACGGTGAGGGTCGGCGACATCCTG
CGAGAGGGCGAGCAAACCGTGGTGCTACAGGGAACCTCGAACACCCACCT
GACTAGCCTGGCGTGGTCGGATGACGGGACGATTCTGACGTCCTGCGGGG
GGAACGGGGCGGTTACGGTGTGGGACACGAGAACTTGGACGGTAAGGTCG
GTCTTGTCCGGCCACTCTAGGCCCGTGTACGGGGCGGCCTTTTACCCCGG
TGCCCCCAGCGGAGCAGCACCATCAGGACAAGAATCGAGCTCGTCGCAGC
TCTTGCTGTCGTGGTCTAGTGACGAAACTGTCTGCGTGTGGGACGCCGGT
AGAGCGACCGGAGACGCGGCAGCCCCCCTAGCTACTCTCGTCGTGGAGGA
AGGGTTTCCTGTGTACAGCTGCTCTGTCTCCGCGGATGCACGGAGGTTCG
CCGTGGCTGGAGGAGGGGGCGGTGGAGAGAAGGCGGGGTTCCTCGGGGTG
CCGATCAAGCTCGTGGATCTCCGCGACGAAGCGATAGAGCAAGGCGGGAA
GGAATGCGATTCCCACGCCCAGAGGGGAAATAGTATTGACGCACCAGCAG
TCTAA
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