mRNA_P-littoralis_Contig616.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig616.10.1
Unique NamemRNA_P-littoralis_Contig616.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig616.10.1 vs. uniprot
Match: D7FSW3_ECTSI (Glycosyl transferase, group 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW3_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 8.470e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:    3 RLLRKEELAGGGHIHVLDEAALCSPRRY 86
            R LRKEELAGGGHIHVLDEAALC+PRR+
Sbjct:  104 RRLRKEELAGGGHIHVLDEAALCNPRRW 131
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BLAST of mRNA_P-littoralis_Contig616.10.1 vs. uniprot
Match: A0A6H5L731_9PHAE (Glyco_trans_2-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L731_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.060e-5
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 3 
Query:    3 RLLRKEELAGGGHIHVLDEAALCSPRRYNFP 95
            R LRKEELAGGGHIHVLDEAALC+PRR+  P
Sbjct:  223 RRLRKEELAGGGHIHVLDEAALCNPRRWEQP 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig616.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSW3_ECTSI8.470e-689.29Glycosyl transferase, group 2 family protein n=1 T... [more]
A0A6H5L731_9PHAE1.060e-583.87Glyco_trans_2-like domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig616contigP-littoralis_Contig616:37606..38699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1094
Hectar predicted targeting categorysignal anchor
Exons1
Cds size696
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.400284-UTR-P-littoralis_Contig616:37605..377781680791283.400284-UTR-P-littoralis_Contig616:37605..37778Pylaiella littoralis U1_48UTRP-littoralis_Contig616 37606..37778 +
1680791283.4250016-UTR-P-littoralis_Contig616:38474..386991680791283.4250016-UTR-P-littoralis_Contig616:38474..38699Pylaiella littoralis U1_48UTRP-littoralis_Contig616 38475..38699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.4120176-CDS-P-littoralis_Contig616:37778..384741680791283.4120176-CDS-P-littoralis_Contig616:37778..38474Pylaiella littoralis U1_48CDSP-littoralis_Contig616 37779..38474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig616.10.1prot_P-littoralis_Contig616.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig616 37779..38474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig616.10.1

>prot_P-littoralis_Contig616.10.1 ID=prot_P-littoralis_Contig616.10.1|Name=mRNA_P-littoralis_Contig616.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=232bp
MSCGVLCTPKYVVAVGEMCFLFFVGRASCSFIYLFIYFLSACLLVPPVSF
FFKIMFLEELLLLSDWFSACVSFIPLCLSPFVFVLPVFFFSIFFNIVFLE
ELLLLPSLVHCLIAVCLCKTPFVSSHRCRFFGCFVFIFFSRLYISVFLVS
CLGAPQKTPLVVLRYLCCACLVFLSGDGRALFYFYLFFAAGTTCAWFVTP
GETIAASVRENQPTRMTVVILELVFRCGWLR*
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mRNA from alignment at P-littoralis_Contig616:37606..38699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig616.10.1 ID=mRNA_P-littoralis_Contig616.10.1|Name=mRNA_P-littoralis_Contig616.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1094bp|location=Sequence derived from alignment at P-littoralis_Contig616:37606..38699+ (Pylaiella littoralis U1_48)
TGAGACTCCTCCGAAAGGAAGAGCTGGCGGGAGGAGGACACATCCACGTC
CTAGATGAGGCGGCGCTGTGTTCCCCACGAAGGTACAACTTTCCTTTCCC
AATAAATGCCGAAAAAACGATACAGCCAGCGCTGGGTGCGGCAGGCTGAC
TCGCAAGGTGGATAAAATGTCGCATGTCCTGCGGTGTGTTATGTACTCCG
AAATACGTGGTAGCGGTGGGTGAGATGTGTTTCTTGTTCTTCGTCGGACG
TGCCAGCTGCTCCTTTATTTATTTATTTATTTATTTCTTGTCTGCCTGCC
TGCTCGTCCCACCTGTTTCATTCTTCTTCAAAATTATGTTTCTCGAAGAG
CTGCTGTTACTCTCAGATTGGTTTTCTGCTTGTGTGTCGTTCATCCCTCT
TTGTTTATCTCCTTTTGTTTTTGTCTTACCTGTCTTCTTCTTCTCCATCT
TCTTCAATATTGTGTTCCTCGAAGAACTGCTGTTACTCCCGAGTTTGGTT
CACTGCTTGATTGCCGTTTGTCTCTGCAAGACTCCTTTCGTCTCCTCTCA
TCGTTGTCGTTTTTTCGGCTGTTTTGTGTTCATTTTTTTTTCGCGTCTGT
ACATATCTGTTTTTCTTGTTTCGTGTTTGGGGGCACCGCAGAAGACACCC
CTCGTGGTTTTGCGGTATCTATGCTGTGCCTGTTTAGTTTTTTTATCTGG
GGATGGTCGTGCCCTATTTTACTTTTATTTATTTTTTGCCGCTGGCACGA
CATGTGCCTGGTTTGTGACCCCGGGCGAAACGATAGCGGCGAGCGTACGT
GAGAATCAACCAACAAGAATGACGGTTGTTATCCTCGAGCTGGTTTTCCG
CTGTGGTTGGTTGAGGTGATCGGCTGCTGTAGCGAAGGCACAATATTTTG
TCCACTTGAACCAATCGATTTTTTTCTGCTGTGTTTGCTTCTGTGTATCC
CGTGTGCACAAGCTCAAATGCCACACAACCGTTTGTTTCGAAATACTTCA
GGTTGGTGTGATGTACGGCTTCCAGCACAACTTTATGGTGTGTGCTCCCA
CAACAACGGCGTGAAGCTTAATTCGTGTCCGACCTGTGTTCATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig616:37606..38699+

>mRNA_P-littoralis_Contig616.10.1 ID=mRNA_P-littoralis_Contig616.10.1|Name=mRNA_P-littoralis_Contig616.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=696bp|location=Sequence derived from alignment at P-littoralis_Contig616:37606..38699+ (Pylaiella littoralis U1_48)
ATGTCCTGCGGTGTGTTATGTACTCCGAAATACGTGGTAGCGGTGGGTGA
GATGTGTTTCTTGTTCTTCGTCGGACGTGCCAGCTGCTCCTTTATTTATT
TATTTATTTATTTCTTGTCTGCCTGCCTGCTCGTCCCACCTGTTTCATTC
TTCTTCAAAATTATGTTTCTCGAAGAGCTGCTGTTACTCTCAGATTGGTT
TTCTGCTTGTGTGTCGTTCATCCCTCTTTGTTTATCTCCTTTTGTTTTTG
TCTTACCTGTCTTCTTCTTCTCCATCTTCTTCAATATTGTGTTCCTCGAA
GAACTGCTGTTACTCCCGAGTTTGGTTCACTGCTTGATTGCCGTTTGTCT
CTGCAAGACTCCTTTCGTCTCCTCTCATCGTTGTCGTTTTTTCGGCTGTT
TTGTGTTCATTTTTTTTTCGCGTCTGTACATATCTGTTTTTCTTGTTTCG
TGTTTGGGGGCACCGCAGAAGACACCCCTCGTGGTTTTGCGGTATCTATG
CTGTGCCTGTTTAGTTTTTTTATCTGGGGATGGTCGTGCCCTATTTTACT
TTTATTTATTTTTTGCCGCTGGCACGACATGTGCCTGGTTTGTGACCCCG
GGCGAAACGATAGCGGCGAGCGTACGTGAGAATCAACCAACAAGAATGAC
GGTTGTTATCCTCGAGCTGGTTTTCCGCTGTGGTTGGTTGAGGTGA
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