mRNA_P-littoralis_Contig616.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig616.6.1
Unique NamemRNA_P-littoralis_Contig616.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig616.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig616contigP-littoralis_Contig616:28036..28917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size883
Hectar predicted targeting categorymitochondrion
Exons1
Cds size570
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.3403873-UTR-P-littoralis_Contig616:28035..283471680791283.3403873-UTR-P-littoralis_Contig616:28035..28347Pylaiella littoralis U1_48UTRP-littoralis_Contig616 28036..28347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.3545592-CDS-P-littoralis_Contig616:28347..289171680791283.3545592-CDS-P-littoralis_Contig616:28347..28917Pylaiella littoralis U1_48CDSP-littoralis_Contig616 28348..28917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig616.6.1prot_P-littoralis_Contig616.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig616 28348..28917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig616.6.1

>prot_P-littoralis_Contig616.6.1 ID=prot_P-littoralis_Contig616.6.1|Name=mRNA_P-littoralis_Contig616.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp
GTLPTLRGGVAAKAVKLKFRSGVAAKILVQKKQATLRGGGVQKLSGSNRG
VVLLLSCRAVGQYSRSGVAAKLQGRSNSALWYICRDSEARGKRARVSREA
SWRDIFETYYVCVQPSILYVMLPFAVAPPSLPFPFLSFLFFFNFLFPLLS
LISYPFLFLFFPSGCDGMFWSFLFVYFVFFFFPSLCLYF*
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mRNA from alignment at P-littoralis_Contig616:28036..28917-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig616.6.1 ID=mRNA_P-littoralis_Contig616.6.1|Name=mRNA_P-littoralis_Contig616.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=882bp|location=Sequence derived from alignment at P-littoralis_Contig616:28036..28917- (Pylaiella littoralis U1_48)
GGTACTCTCCCTACGCTACGGGGTGGTGTCGCCGCGAAAGCTGTCAAGTT
GAAGTTCCGGAGTGGTGTTGCCGCAAAAATTCTAGTGCAGAAGAAGCAAG
CCACGCTGCGGGGCGGTGGGGTTCAAAAGCTGTCGGGCAGTAATCGCGGA
GTGGTGTTGCTGCTAAGCTGCAGGGCAGTCGGGCAGTACTCGCGGAGCGG
TGTTGCTGCTAAGCTGCAGGGCAGAAGCAACAGTGCGCTGTGGTACATAT
GTCGGGATTCAGAAGCGCGCGGGAAGAGAGCACGCGTGAGCCGGGAGGCT
TCGTGGCGAGACATTTTTGAGACTTATTACGTGTGTGTGCAGCCATCGAT
CCTCTATGTTATGCTTCCCTTTGCCGTTGCTCCTCCTTCCCTTCCCTTCC
CTTTCCTTTCTTTCCTTTTCTTCTTCAATTTTCTCTTTCCTCTCCTTTCC
TTAATCTCTTATCCGTTTCTCTTTCTTTTCTTCCCCTCGGGCTGTGATGG
CATGTTTTGGTCCTTTCTGTTTGTTTATTTTGTATTTTTTTTCTTTCCGA
GTCTCTGTTTGTATTTTTAGCCAAACACAAGGTACCTCCTTCGTTCCTAT
CCCTGTTTGTGGCTGGCTTCTTCTTATAAACGCGTCTGTTATCGCGAATG
GTGAACTCCCAAAAATCGACACTTTTTGCTCAGATCGTTTTGCTCAGATC
CCTGAAAGCAAAATGGGCGAGCGCCCGTTTTTTTTCGCCCGCTGCTTTCC
AGGGGGGCGCCGGCGCCCGCTCCTTCTGCGTACGGCGAGAAGCTGCTGGC
CCCCTTGCCTACTGCTCGTGACCGGCGTCTGCTGTTTGTGAAGCCGCGTG
CGAGTTCGGGCAAAACTCTCCTTGGATTTTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig616:28036..28917-

>mRNA_P-littoralis_Contig616.6.1 ID=mRNA_P-littoralis_Contig616.6.1|Name=mRNA_P-littoralis_Contig616.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig616:28036..28917- (Pylaiella littoralis U1_48)
GGTACTCTCCCTACGCTACGGGGTGGTGTCGCCGCGAAAGCTGTCAAGTT
GAAGTTCCGGAGTGGTGTTGCCGCAAAAATTCTAGTGCAGAAGAAGCAAG
CCACGCTGCGGGGCGGTGGGGTTCAAAAGCTGTCGGGCAGTAATCGCGGA
GTGGTGTTGCTGCTAAGCTGCAGGGCAGTCGGGCAGTACTCGCGGAGCGG
TGTTGCTGCTAAGCTGCAGGGCAGAAGCAACAGTGCGCTGTGGTACATAT
GTCGGGATTCAGAAGCGCGCGGGAAGAGAGCACGCGTGAGCCGGGAGGCT
TCGTGGCGAGACATTTTTGAGACTTATTACGTGTGTGTGCAGCCATCGAT
CCTCTATGTTATGCTTCCCTTTGCCGTTGCTCCTCCTTCCCTTCCCTTCC
CTTTCCTTTCTTTCCTTTTCTTCTTCAATTTTCTCTTTCCTCTCCTTTCC
TTAATCTCTTATCCGTTTCTCTTTCTTTTCTTCCCCTCGGGCTGTGATGG
CATGTTTTGGTCCTTTCTGTTTGTTTATTTTGTATTTTTTTTCTTTCCGA
GTCTCTGTTTGTATTTTTAG
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