mRNA_P-littoralis_Contig616.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig616.34.1
Unique NamemRNA_P-littoralis_Contig616.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig616.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig616contigP-littoralis_Contig616:170123..170623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.2783237-UTR-P-littoralis_Contig616:170122..1701631680791283.2783237-UTR-P-littoralis_Contig616:170122..170163Pylaiella littoralis U1_48UTRP-littoralis_Contig616 170123..170163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791283.2892692-CDS-P-littoralis_Contig616:170163..1702051680791283.2892692-CDS-P-littoralis_Contig616:170163..170205Pylaiella littoralis U1_48CDSP-littoralis_Contig616 170164..170205 -
1680791283.3047194-CDS-P-littoralis_Contig616:170542..1706231680791283.3047194-CDS-P-littoralis_Contig616:170542..170623Pylaiella littoralis U1_48CDSP-littoralis_Contig616 170543..170623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig616.34.1prot_P-littoralis_Contig616.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig616 170164..170623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig616.34.1

>prot_P-littoralis_Contig616.34.1 ID=prot_P-littoralis_Contig616.34.1|Name=mRNA_P-littoralis_Contig616.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=41bp
HLDISQHFVGEGTRAVPVGDPAKRKDDLTSMPTRRRPCSP*
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mRNA from alignment at P-littoralis_Contig616:170123..170623-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig616.34.1 ID=mRNA_P-littoralis_Contig616.34.1|Name=mRNA_P-littoralis_Contig616.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig616:170123..170623- (Pylaiella littoralis U1_48)
CACTTAGATATATCACAGCACTTCGTGGGAGAGGGGACGCGTGCGGTTCC
AGTAGGAGACCCGGCCAAACGCAAGGATGACCTGTTGAGAGAGGGTTTCA
CGGCGGGAGAGATAAGAGAGGCCCGTCTTGCATGGACTTTTCTGGACGAA
TCGCTGAAAAAGGAGGAAGACAGGGCGGTACTTCAGAGATGCAAGTCACC
AAGAGAAGCGTTCAACTACCTCGAGCAGTTCTACGACCCAGAGAGTGAGA
TAGCCACGCAGAGGCTGTACGAAAAGTTCCACCAATTCAAAATACCAGCT
CACGGGAACCCGGTTGCTGCATTCCATGAGCTAGAAGACCTCAACAACAG
GATGCAGGAGAAAGGCCTACCACGAGTTCCTGAACCCATGGTACACGCTC
GCTTCGTCTCCGCCTTGCCTGACGAGTATGCCCACACGAAGGAGACCCTG
CAGTCCATGAAGGATCGAACCAGGGAGGAGATCATTCGGAGGGTTGGAAC
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig616:170123..170623-

>mRNA_P-littoralis_Contig616.34.1 ID=mRNA_P-littoralis_Contig616.34.1|Name=mRNA_P-littoralis_Contig616.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=123bp|location=Sequence derived from alignment at P-littoralis_Contig616:170123..170623- (Pylaiella littoralis U1_48)
CACTTAGATATATCACAGCACTTCGTGGGAGAGGGGACGCGTGCGGTTCC
AGTAGGAGACCCGGCCAAACGCAAGGATGACCTGACGAGTATGCCCACAC
GAAGGAGACCCTGCAGTCCATGA
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