mRNA_P-littoralis_Contig615.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig615.36.1
Unique NamemRNA_P-littoralis_Contig615.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: D7FPP7_ECTSI (Similar to CG7186-PA n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP7_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 6.890e-96
Identity = 179/286 (62.59%), Postives = 203/286 (70.98%), Query Frame = 2
Query:  374 EEAAAIALQLMLAVEYMHSKNIVHRDLKPANLLITEDKQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSIDLGPIAMDVGTPQPKEGDIRMHLDPYDELERENIRAGVFEVDSDRVGAVGENFLRKLIVLDPTERMSARQAGEHAWLGGREAVELKRAEAEAITKARQEEREAQQKERTQLLRSRRRRKVPKIIMTTRVPALVAEGA--------------------SATAAGPGIPRAMMAEASGSKA 1171
            +EA  I++Q+  A+E++HSK I+HRDLKPANLLIT D Q+RLADFGF+KML EG  TMTGLCGTKPYLSPEQVN  PYG  ADMWAAGVVV ELLMGVT FCPD SIDLGPI+ D+ + + + GDIRM LDPYDELERENIRAGVF+VDS+RVGAVGE+FLRKLIVLDP ERMSARQAGEH WLG   AV LKRAE EA+ K  QE  +A               +VPK+    RV A VAEGA                    +AT AG  +PRAMM   SGS A
Sbjct:  323 KEAVTISIQMFSAIEHVHSKGILHRDLKPANLLITNDMQVRLADFGFSKMLAEGETTMTGLCGTKPYLSPEQVNRSPYGIEADMWAAGVVVSELLMGVTVFCPDPSIDLGPISKDISSLE-EGGDIRMRLDPYDELERENIRAGVFKVDSERVGAVGEDFLRKLIVLDPAERMSARQAGEHPWLGDEGAVMLKRAEVEAVLKEAQETEQAXXXXXXXXXXXXXXXRVPKMARAARVLAPVAEGALQPASSTAGAVSMLTSASVGAATGAGADVPRAMMVAESGSTA 607          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: A0A6H5L849_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L849_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 6.580e-62
Identity = 144/311 (46.30%), Postives = 164/311 (52.73%), Query Frame = 2
Query:  374 EEAAAIALQLMLAVEYMHSKNIVHRDLKPANLLITEDKQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAF----------------------------------------------------------------------CPDSSIDLGPIAMDVGTPQPKEGDIRMHLDPYDELERENIRAGVFEVDSDRVGAVGENFLRK-----------------------------------LIVLDPTERMSARQAGEHAWLGGREAVELKRAEAEAITKARQE 991
            +EA  I++Q+  A+E++HSK I+HRDLKPANLL+T D Q+RLADFGF+KML EG  TMTGLCGTK       VN  PYG  ADMWAAGVVV ELLMG T F                                                                       PD SIDLGPI+ D+ + + + GDIRM LDPYDELERENIRAGVF+VDS+RVGAVGE+FLRK                                   LIVLDP ERMSARQAGEH WLG   AV LKRAE EA+ K  QE
Sbjct:  318 KEAVTISVQMFSAIEHVHSKGILHRDLKPANLLVTNDMQVRLADFGFSKMLAEGETTMTGLCGTK-------VNKLPYGIEADMWAAGVVVSELLMGATVFWWLCLYSSVNMRRTAYKARRRGSGPVCPKRYGLYGGCTMLFFRRLEDNPYFCTASEPPASRFPPTLLAEFSPDPSIDLGPISKDISSLE-EGGDIRMRLDPYDELERENIRAGVFKVDSERVGAVGEDFLRKVNGIEKARCYGQRGGCRNDTAYLPYFLATLYVPPQLIVLDPAERMSARQAGEHPWLGDEGAVMLKRAEVEAVLKEAQE 620          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: A0A7S4NYY9_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NYY9_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 2.750e-25
Identity = 69/182 (37.91%), Postives = 96/182 (52.75%), Query Frame = 2
Query:  389 IALQLMLAVEYMHSKNIVHRDLKPANLLIT--EDKQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSIDLGPIAMDVGTPQPKEGDIRMHLDPYDELERENIRAGVFEVDS-DRVGAVGENFLRKLIVLDPTERMSARQAGEHAWL 925
            I  QL+ A+EY+H  NIVHRD+KP N+L+   +D  ++LADFGFAKM E  T  +   CGT  Y++PE +    YGT  DMW+ GV+ + LL G   F  D+  +L                          LE+ +     FE +    V     NF+ KL+VLDPT+RM+A Q+  H W+
Sbjct:    3 IIQQLLKALEYLHYLNIVHRDIKPENILVKSFDDMSIKLADFGFAKMFEL-TMRINSACGTPGYVAPEVLYEDDYGTPVDMWSVGVITFTLLSGQPPFPHDNLAEL--------------------------LEKISKAEFTFEPEQWKNVSKDARNFIEKLLVLDPTKRMTANQSLNHPWM 157          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: A0A0L0SCH3_ALLM3 (CAMK/CAMK1 protein kinase n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SCH3_ALLM3)

HSP 1 Score: 116 bits (291), Expect = 5.980e-25
Identity = 74/190 (38.95%), Postives = 102/190 (53.68%), Query Frame = 2
Query:  377 EAAAIALQLMLAVEYMHSKNIVHRDLKPANLLIT---EDKQLRLADFGFAKMLEEGT-DTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSID--LGPIAMDVG-TPQPKEGDIRMHLDPYDELERENIRAGVFEVDSDRVGAVGENFLRKLIVLDPTERMSARQAGEHAWL 925
            +AA I   +  AV Y+H +N++HRDLKP NLL     ED  L +ADFG A+ LE  +   +T +CGT  ++SPE + + PYG   DMWA G + Y LL+G T F  +S+ D     IA D   TP+    +  +H                       V    ++F+R L++LDP ERM+ARQA EH WL
Sbjct:  114 DAANIVRTICDAVAYLHDQNVIHRDLKPENLLFRTADEDSDLMIADFGLARCLESDSYPLLTTVCGTPGFMSPEILQHLPYGKPVDMWAIGCITYFLLVGYTPFDRNSTADEIQAIIAADYAFTPE----EYWVH-----------------------VSDTAKDFIRGLLMLDPNERMTARQALEHPWL 276          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: UPI001939E142 (calcium/calmodulin-dependent protein kinase type IV-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939E142)

HSP 1 Score: 113 bits (282), Expect = 7.300e-24
Identity = 72/194 (37.11%), Postives = 101/194 (52.06%), Query Frame = 2
Query:  368 SSEEAAAIALQLMLAVEYMHSKNIVHRDLKPANLLI---TEDKQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSIDLGPIAMDVGTPQPKEGDIRMHLDPYDELERENIRAGVFEVDS---DRVGAVGENFLRKLIVLDPTERMSARQAGEHAWLGG 931
            S  +AA +  Q + AV Y+H  NIVHRDLKP NLL    T++  L +ADFG +K+ +      T +CGT  Y++PE +    YG+A DMWA GV+ Y LL G   F  +                   GD  M            +  G FE DS   D +    ++ +R+LIVL+P+ER++ARQA +H W+ G
Sbjct:  122 SELDAAHVVRQALEAVAYIHDNNIVHRDLKPENLLYSDETDNAALMVADFGLSKINQNSLQLKT-VCGTPGYVAPEVLLGKKYGSAVDMWAIGVITYILLCGYEPFYDER------------------GDKAMFR---------KVLKGEFEFDSPNWDEISGNAKDLIRRLIVLEPSERLTARQALKHPWVMG 287          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: D8LT15_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT15_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 9.040e-24
Identity = 80/242 (33.06%), Postives = 118/242 (48.76%), Query Frame = 2
Query:  368 SSEEAAAIALQLMLAVEYMHSKNIVHRDLKPANLLITED-KQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPD--------------SSIDLGPIAMDVGT-----------------PQP--------KEGDIRMHLDPYDELE--RENIRA----GVFEVDSDRVGAVGENFLRKLIVLDPTERMSARQAGEHAWLGGREAVELKR 955
            + ++A  +  QL+ A+E++H++ IVH D+KPAN+L+     ++RLADFG +  +  G   + G C T PY+SPE  N   +GTA DMWA GVV YEL+MGV  F                 S+   G I  D G+                 P+P        ++G +R      +     RE +RA    G + VD   VG  G  F+ KL+  +P++RMSA  A  H+WL     +  +R
Sbjct:  496 TEKQAVFLIRQLVSALEFLHARRIVHCDVKPANMLLVGSINKMRLADFGLSAKVPRGHAGVNGACRTLPYMSPELFNGAKFGTAVDMWATGVVAYELMMGVLPFAGGGKSSTAPRGSGGSVSTDSSGSIVTDCGSGPGTSFRNSSSSSRGASPRPASILATGDRDGLLREKRARKEAKVTWRERVRADIINGEYTVDDGAVGHQGRRFIEKLLQKNPSDRMSAYVAAGHSWLDPNSTIPARR 737          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: A0A8C3U7A8_CATUS (Protein kinase domain-containing protein n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3U7A8_CATUS)

HSP 1 Score: 112 bits (280), Expect = 2.050e-23
Identity = 68/195 (34.87%), Postives = 101/195 (51.79%), Query Frame = 2
Query:  368 SSEEAAAIALQLMLAVEYMHSKNIVHRDLKPANLL---ITEDKQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSIDLGPIAMDVGTPQPKEGDIRMHLDPY-DELERENIRAGVFEVDS---DRVGAVGENFLRKLIVLDPTERMSARQAGEHAWLGG 931
            S  +AA +  Q++ AV Y+H   +VHRDLKP NLL   ++ D  L++ DFG +K+++E  DTM  +CGT  Y +PE ++  PYG   DMW+ GV+ Y LL G   F                             DP  D+     I +  +E  S   D V    ++ +RKL+VLDP +R++ +QA +H W+ G
Sbjct:  119 SERDAAHVVKQILEAVSYLHENGVVHRDLKPENLLYADLSPDAPLKIGDFGLSKIVDE-QDTMKTVCGTPGYCAPEILHGCPYGPEVDMWSVGVITYILLCGFEPF----------------------------FDPRGDQFMYGRILSCDYEFVSPWWDEVSPNAKDLVRKLMVLDPRQRLTVQQALQHPWVSG 284          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: A0A1I7W2Q8_LOALO (Protein kinase domain-containing protein n=1 Tax=Loa loa TaxID=7209 RepID=A0A1I7W2Q8_LOALO)

HSP 1 Score: 106 bits (265), Expect = 2.680e-23
Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  392 ALQLMLAVEYMHSKNIVHRDLKPANLLITEDKQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSIDL 700
            A +++LA+EY+HSKNIV+RDLKP NL++TE   L+L DFGFAK++ + T+T   LCGT  YL+PE ++   Y  A D W+ G+++YE+L G   F  D+ +D+
Sbjct:   44 ACEVILALEYLHSKNIVYRDLKPENLMLTEIGHLKLTDFGFAKIVNDMTNT---LCGTPEYLAPEVIDGNGYNKAVDWWSLGILIYEMLAGRPPFEGDTLMDI 143          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: L8GMM0_ACACA (Protein serine/threonine kinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GMM0_ACACA)

HSP 1 Score: 110 bits (274), Expect = 4.590e-23
Identity = 64/189 (33.86%), Postives = 102/189 (53.97%), Query Frame = 2
Query:  368 SSEEAAAIALQLMLAVEYMHSKNIVHRDLKPANLL---ITEDKQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSIDLGPIAMDVGTPQPKEGDIRMHLDPYDELERENIRAGVFEVDSDRVGAVGENFLRKLIVLDPTERMSARQAGEHAWL 925
            + E+A  +  +++ A+EY+H  NI HRDLKP NLL   I +D ++++ADFG +K+++E     T  CGT  Y++PE +N   Y    DMW+ GV+ Y LL G   F  ++             P+  E  ++   D  +E   E             + A G++F+  L+V+DP +R++A+QA EH WL
Sbjct:  106 TEEDAKVLVRKIVSAIEYLHDMNIAHRDLKPENLLVKSIADDTEVKIADFGLSKIIDEQKMMQTA-CGTPGYVAPEVLNAEGYDKEVDMWSIGVITYILLCGFPPFYAET------------VPEVFEQILKAEYDYPEEYWGE-------------ISAEGKDFINHLLVVDPKDRLTAKQALEHKWL 268          
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Match: B8C2S1_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2S1_THAPS)

HSP 1 Score: 108 bits (270), Expect = 5.610e-23
Identity = 65/192 (33.85%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  368 SSEEAAAIALQLMLAVEYMHSKNIVHRDLKPANLLIT---EDKQLRLADFGFAKMLEEGTDTMTGLCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSIDLGPIAMDVGTPQPKEGDIRMHLDPYDELERENIRAGVFEVDSDRVGAVGE---NFLRKLIVLDPTERMSARQAGEHAWL 925
            +  EA  +   L  A++Y HSK +VHRDLKP NLL+     D +++LADFGFAK      D+++ +CGT  Y++PE +    YGT ADMW+ GV+V+ L+ G   F  D+  +L  +++                             G FE D +  G + +   + +  L+V DPTER SA +   H W+
Sbjct:   91 TESEARDVCKILFEALKYTHSKRVVHRDLKPENLLLQFKDSDSEIKLADFGFAKK-SPTEDSLSTICGTPGYVAPEILRKKKYGTKADMWSMGVIVFILIGGYPPFYADNEKELLKLSV----------------------------LGEFEFDEEHWGDISDGAKDLISSLLVTDPTERASAEEILAHPWM 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig615.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPP7_ECTSI6.890e-9662.59Similar to CG7186-PA n=2 Tax=Ectocarpus siliculosu... [more]
A0A6H5L849_9PHAE6.580e-6246.30Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S4NYY9_9EUKA2.750e-2537.91Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A0L0SCH3_ALLM35.980e-2538.95CAMK/CAMK1 protein kinase n=2 Tax=Allomyces macrog... [more]
UPI001939E1427.300e-2437.11calcium/calmodulin-dependent protein kinase type I... [more]
D8LT15_ECTSI9.040e-2433.06Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A8C3U7A8_CATUS2.050e-2334.87Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A1I7W2Q8_LOALO2.680e-2348.54Protein kinase domain-containing protein n=1 Tax=L... [more]
L8GMM0_ACACA4.590e-2333.86Protein serine/threonine kinase n=1 Tax=Acanthamoe... [more]
B8C2S1_THAPS5.610e-2333.85Protein kinase domain-containing protein (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig615contigP-littoralis_Contig615:154915..159544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPP7
PFAMsPkinase
Model size1660
Max annot lvl2759|Eukaryota
KEGG koko:K06641,ko:K20877
KEGG Pathwayko04110,ko04111,ko04115,ko04218,ko05166,map04110,map04111,map04115,map04218,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001775,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007338,GO:0007343,GO:0007346,GO:0008150,GO:0008152,GO:0009566,GO:0009794,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019953,GO:0022414,GO:0032991,GO:0036211,GO:0040019,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044703,GO:0045787,GO:0045931,GO:0045977,GO:0045995,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051704,GO:0051726,GO:0061695,GO:0065007,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1902554,GO:1902911,GO:1990234,GO:2000026
Exons9
Evalue1.89e-97
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size849
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig615.36.1prot_P-littoralis_Contig615.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig615 155323..158087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791282.9566457-UTR-P-littoralis_Contig615:154914..1553221680791282.9566457-UTR-P-littoralis_Contig615:154914..155322Pylaiella littoralis U1_48UTRP-littoralis_Contig615 154915..155322 -
1680791283.049623-UTR-P-littoralis_Contig615:158087..1581431680791283.049623-UTR-P-littoralis_Contig615:158087..158143Pylaiella littoralis U1_48UTRP-littoralis_Contig615 158088..158143 -
1680791283.0588706-UTR-P-littoralis_Contig615:158468..1585631680791283.0588706-UTR-P-littoralis_Contig615:158468..158563Pylaiella littoralis U1_48UTRP-littoralis_Contig615 158469..158563 -
1680791283.0731435-UTR-P-littoralis_Contig615:159034..1591291680791283.0731435-UTR-P-littoralis_Contig615:159034..159129Pylaiella littoralis U1_48UTRP-littoralis_Contig615 159035..159129 -
1680791283.0846512-UTR-P-littoralis_Contig615:159387..1595441680791283.0846512-UTR-P-littoralis_Contig615:159387..159544Pylaiella littoralis U1_48UTRP-littoralis_Contig615 159388..159544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791282.9698646-CDS-P-littoralis_Contig615:155322..1555421680791282.9698646-CDS-P-littoralis_Contig615:155322..155542Pylaiella littoralis U1_48CDSP-littoralis_Contig615 155323..155542 -
1680791282.9845119-CDS-P-littoralis_Contig615:156050..1562201680791282.9845119-CDS-P-littoralis_Contig615:156050..156220Pylaiella littoralis U1_48CDSP-littoralis_Contig615 156051..156220 -
1680791282.998416-CDS-P-littoralis_Contig615:156511..1566951680791282.998416-CDS-P-littoralis_Contig615:156511..156695Pylaiella littoralis U1_48CDSP-littoralis_Contig615 156512..156695 -
1680791283.0115116-CDS-P-littoralis_Contig615:156958..1570681680791283.0115116-CDS-P-littoralis_Contig615:156958..157068Pylaiella littoralis U1_48CDSP-littoralis_Contig615 156959..157068 -
1680791283.0247312-CDS-P-littoralis_Contig615:157299..1573851680791283.0247312-CDS-P-littoralis_Contig615:157299..157385Pylaiella littoralis U1_48CDSP-littoralis_Contig615 157300..157385 -
1680791283.0381403-CDS-P-littoralis_Contig615:158008..1580871680791283.0381403-CDS-P-littoralis_Contig615:158008..158087Pylaiella littoralis U1_48CDSP-littoralis_Contig615 158009..158087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig615.36.1

>prot_P-littoralis_Contig615.36.1 ID=prot_P-littoralis_Contig615.36.1|Name=mRNA_P-littoralis_Contig615.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=283bp
MLAVEYMHSKNIVHRDLKPANLLITEDKQLRLADFGFAKMLEEGTDTMTG
LCGTKPYLSPEQVNNFPYGTAADMWAAGVVVYELLMGVTAFCPDSSIDLG
PIAMDVGTPQPKEGDIRMHLDPYDELERENIRAGVFEVDSDRVGAVGENF
LRKLIVLDPTERMSARQAGEHAWLGGREAVELKRAEAEAITKARQEEREA
QQKERTQLLRSRRRRKVPKIIMTTRVPALVAEGASATAAGPGIPRAMMAE
ASGSKAAAEMNGAPATAPVATATAEGVAADGA*
back to top

mRNA from alignment at P-littoralis_Contig615:154915..159544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig615.36.1 ID=mRNA_P-littoralis_Contig615.36.1|Name=mRNA_P-littoralis_Contig615.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4630bp|location=Sequence derived from alignment at P-littoralis_Contig615:154915..159544- (Pylaiella littoralis U1_48)
GTCATGGTCCCTCTAGTTGGTCACGACGAGCAGGTGGAAGGAGCCTCCTT CATGCCGCGAATATTCTGCAGCAGCGACGACGATGCCCTTCGCAAGTGGG AAGCCGGAGACCTCAGCGTACAGGCGGTGGATGCAGAGATTGGGGGCGGC ACGTTCGGTGAGCAACAATCAAACGTCCTCTGTGCGGCACGTACACAAGC AATTCGTTGCACAGCTGCAACAAAGCTAAAGCTGGAGTCGTCGCGATGTG TTGGCAAGTGTATATTGGAATCTTTTGTACGGCATGCAGGGCCGAGGATC ACGTGCCGTCTTTGCTTAGCCCCGTCGTGCTGTATGATATACAAGAGAGT TTTGTCTTGCCGGGCCCCTGAGTCCGATCCTGTGACGCGTTGATATCGCC GCGTTCTCGGAACAGCCAAGGTGTTGTTCGGGGAGACGAGGCTCGGTGTT CTGGTCGCCATCAAGGCCATCGGCAGGGAGAGCGAGGACTTCGGCTGTCA GGCAAGTGGCGTGGCTCAGACGGGTAGTCAGTCGCCGGTATGCAAGCGTT TCGGGCACGAAGATTGATGTGTTACCGTTTCTGGGCACACACTGCCTGTA CAGAGCAGCGCGTGGTGACAGCATCGTCGTCCGTGTCGAACGGTGAGGCC GAAGAGCCGTGCGATAGCCAGAGAACGCTAGGCCTAGTGCACGACTAGGC TGCTGGTCGGTTGTGACGGTCGGCGGGCTATTAGTTGTCGGCGTTTTCTT TTCAGGACTGTTCGGTGTGATCCCATCGACCGTACGCACGGGGAACATGC ACTTTTCTTTAACCGCAGCTTTAGGTTCTGCTTGCAAACAACATTAGTAT GGATGAACGCCAGAAATACTTCCGTACGCTTTTGCGTAGTTATTTTTCCC TTTTCCTCTTCCCGTGTCTATCGCTGCGCCCCCGCCCTGTCTTCGCTTGA TTCCCCCGACGAACTTACTGGCACCTCTCAGGATAAGTTCATCAAACGCG AGATCCAGACTCTGACCATGACCGCAGACCACCCCAACGTGGTTGACATC CTCGGCACCCTCAGCACCGTTCCCACGTGGGACTCTTGCTCTCTGACTCT CCCCACCTAACCGCTCTGCCTCTTTCTCTCTCTCAAGGAATATCCCTGCA ACTTGATGACATTGATATTCTAGTGGTCAAAGCCGGTGCCGGCGAAACAC GTGTACATCGCCAAATAATGGCGTAATATACTACACCATTGTTTTGAACT TGACTATCATATGATTTGCTTACTTTATCCTCCCTGGCGCTACACCTGTC TTCTGTCCGCCATGCCGCTGCTCTTCCGCTTTGTTCTGCGCTTGCCATAC TCGTACGGCGTTATTGGGCTGAAATATTCACAAGACCCCAACTGGCAACA GGACGTTCATGATTATGCCCCTCGTCAGAAGAGGCCGCCGCCATTGCCTT GCAACTTATGTTGGCGGTGGAATACATGCACTCGAAGAACATAGTGCACC GTGACTTGAAACCGGCCAACCTGCTAATCACTGAAGGTGAGAACAGGGCA CACCGTGCATCAAGAGAGTCAACCCGAAATTAATTGTGAAACGTCGTTAC ACATCCTTTCACATTACTTCTTCGAAGTACGTTGGATTGGTACATTTTGT CAGCGAGCTGATGGCGACTCGTTTTGGTAGAAGAGCTCTCCGCGTAGCAG GCTGTGCTTTGCAATCAACCGTAGCAGGAACTCGCGAAGGGCCGCGGGTT TCAACCTGCATGGAACTTGTCAATAAAGTGTACCCGGACGTCTTCCAATG CAGTACGAGGTAGTCAGCAATACCGTGGAATACACATTTGGCAGAAGGCG TGGTGTGGCTTTGCATCGTGTAGCTCCTGTGCCGTGCTCTTTGCTGGGCA AGGGGCAAGGGAGGGGGTACGGATACAACAGGAAGTGTTGTTCCGTGTGA TACGGAAACCCATGGTTAAGCATTTTCCAAGACAAGGTTCGCCGAAAGCT CGGTACTGTATGATTGTTCAATTTGTCCGAGGCGGAAAAGCGATGACGTT AACTTGAAAGTATGATGCCAACATATTCAACCTTTCGCCAGTCGACGTCT CCCTGCCCGCACCCTTGCATCGCTTCTGTGACGAACCGAACGGACGTGAA TGGACACAGACAAGCAACTTCGGCTGGCCGATTTCGGTTTCGCAAAGATG CTCGAGGAGGGGACGGACACCATGACCGGCCTGTGCGGCACCAAGGTAGT CCAATTGATTGTATTATTGTATTACGACGTGCGCATGTATTAAACATTTA CGGTAGCGAAACGGTAGGGTTCAGTCTAGTTTTGCTGCAAGTACAAGAAC TCGAATCGTCCCACCGCGCCCATGTCTTGACTCGCCTTCTTTCATGGTGC TCGACTCCCCCTGCGTGTTGTTTGCTTCGACAACCATGCGTGCTCGTGTA CTTGGGTTTATTTCTGGTGCGCCCAGCCCTACCTCTCTCCAGAGCAGGTG AACAACTTTCCCTACGGGACCGCGGCCGACATGTGGGCTGCCGGAGTGGT GGTGTACGAGCTTCTCATGGGAGTCACGGCTTTCTGGTATGTACTATTCG AAAATGTACTTCGTATAAATGTTAGTAGCGTGGTAGTTTGGAATGGTCTT GATCTTCCCAAACGCGATGATGATGGACGCACTCTTCGCGCCTCTGCTAC TGGAGGCATTCTCCGCTGTCTCTCCAGGCTTTCTGCCGTGTCTATGACAG ATCGTCGATGGAGACTATTGACTCAATGTGCCGCAATGATTGTCCCCTAC CGCTGCCACCCTTTTGTTATTGCACCCGCAAACTATTTGTAATATACAGC CCAGACAGCAGCATTGACTTGGGGCCGATCGCCATGGACGTCGGCACGCC CCAGCCTAAGGAAGGAGACATCCGAATGCACCTTGACCCGTACGACGAGC TGGAGAGGGAGAACATCCGGGCTGGAGTATTCGAGGTGGACTCCGACCGT GTGGGGGCGGTGGGCGAGAACTTCTTGAGGAAGGTGGGTGGAATCAACAA ATTTGTTGACAAGTGATATAGTTGCGCACAACTCCTACTTACTGCCGCCC AAACGGAAGTGCATGGCCGGGGGTTGTGTATGAGTGGCTATTTGCGGACC TCGGCGATCACGGAGCCAGTGCAGCGCACACCCCTCTCAAGCGCAAGCAA CAAATGCTTGTATCATATCAGGCCATGACTTGCCACGCGATAAAGGCGCC TTCCTCCGCCATCAACACACACCCACGTGCTCCCTTCTCCGCGGCCGTGT CGTCCCTGCCTCCCCGTACTGTAGCTGATCGTGCTCGACCCGACGGAGCG GATGTCCGCACGGCAGGCAGGCGAGCACGCATGGCTTGGCGGCCGGGAGG CAGTCGAGCTGAAGAGGGCAGAGGCGGAGGCGATCACAAAGGCACGACAA GAGGAAAGGGAAGCCCAGCAGAAAGAGCGGACCCAGCTCCTGAGGTGATT GTTCAGTAACACAACCAGATAGATCAATTTGAAGTGTATTTTTCTCAGCG ACATTTCTATATTATTTATTTACAATGATAATAGTGTTGATGCTGGTATT TTGCCAAGTTCTATTATTTGGTGCGTGTGTTGCAGATGGGGACAGTAGGC GAGAGACGAAGAAAGCACGTACCGAAAAATCAAATATGGGATTGAACCCT TTCATCGACGAAGAAAGTAGAAAGTTATTCTCATGAAAATCGTTGTTCGG GGCACTGGAAGGGCTGTTAGGGGTGTACTCGAGGCCTCCCCGTTTGTGTA CAGTCAAAAGGTAGAGTTGTAGAGAACTGGTCGAACGTTAACGTCGCTAC AAGGTACTCGAAAGAACGAACGCCTGGATCGCTTTGAGCTCCCCGTTGCT GCCGATTATCGCCGCCCATCATCAATTTAACGAAGCACGTCAACCATTTT CGTCGGCGCTTCTTGATCGACGTTGATATTGCCGTCACGGCTACTATCCC AGGAGCAGAAGGCGAAGGAAGGTTCCGAAGATTATCATGACGACCAGAGT CCCTGCTCTCGTTGCAGAGGGAGCATCAGCGACTGCGGCGGGGCCGGGCA TTCCCCGCGCGATGATGGCGGAAGCTTCCGGCTCCAAGGCGGCAGCGGAA ATGAACGGGGCACCGGCTACCGCACCTGTAGCCACGGCGACGGCAGAGGG TGTGGCGGCGGATGGGGCGTAGGGCTTGGAAGGTTGTGCGGCAACGCTGG TAGTGCAGTGCAAGCCTCGCCCTACCCGGATGCTCTAAACCTTGCTGCCA CTTTCGATTTTGTACCAAGTAGATTGTATGATATTGACGTAGGTAGAGTG CGCCACCCACATTGTAATGGGCATTTTCGTGCCTCGCGGCTGTTCTACCT TCGGCATCTCATCTTTGGTCGGTTTAACAGTAACCTGGTATCTCTATACG AAGTATACGAAGGGGGCTGGTCTGATATGGTTCAGCCAGGTAGGTGTACC GTATACTACTTGGTCGTGGTGGCTTCTTTTGAACCCTGTCACCGACCTGA CTCGAGCTCTTTTGCCCTACGTACAGGGTTGTGTAAAAAGTTGCCGTATT CTCAATGTGAGCTAGATGAGCGTACGTGTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig615:154915..159544-

>mRNA_P-littoralis_Contig615.36.1 ID=mRNA_P-littoralis_Contig615.36.1|Name=mRNA_P-littoralis_Contig615.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=849bp|location=Sequence derived from alignment at P-littoralis_Contig615:154915..159544- (Pylaiella littoralis U1_48)
ATGTTGGCGGTGGAATACATGCACTCGAAGAACATAGTGCACCGTGACTT
GAAACCGGCCAACCTGCTAATCACTGAAGACAAGCAACTTCGGCTGGCCG
ATTTCGGTTTCGCAAAGATGCTCGAGGAGGGGACGGACACCATGACCGGC
CTGTGCGGCACCAAGCCCTACCTCTCTCCAGAGCAGGTGAACAACTTTCC
CTACGGGACCGCGGCCGACATGTGGGCTGCCGGAGTGGTGGTGTACGAGC
TTCTCATGGGAGTCACGGCTTTCTGCCCAGACAGCAGCATTGACTTGGGG
CCGATCGCCATGGACGTCGGCACGCCCCAGCCTAAGGAAGGAGACATCCG
AATGCACCTTGACCCGTACGACGAGCTGGAGAGGGAGAACATCCGGGCTG
GAGTATTCGAGGTGGACTCCGACCGTGTGGGGGCGGTGGGCGAGAACTTC
TTGAGGAAGCTGATCGTGCTCGACCCGACGGAGCGGATGTCCGCACGGCA
GGCAGGCGAGCACGCATGGCTTGGCGGCCGGGAGGCAGTCGAGCTGAAGA
GGGCAGAGGCGGAGGCGATCACAAAGGCACGACAAGAGGAAAGGGAAGCC
CAGCAGAAAGAGCGGACCCAGCTCCTGAGGAGCAGAAGGCGAAGGAAGGT
TCCGAAGATTATCATGACGACCAGAGTCCCTGCTCTCGTTGCAGAGGGAG
CATCAGCGACTGCGGCGGGGCCGGGCATTCCCCGCGCGATGATGGCGGAA
GCTTCCGGCTCCAAGGCGGCAGCGGAAATGAACGGGGCACCGGCTACCGC
ACCTGTAGCCACGGCGACGGCAGAGGGTGTGGCGGCGGATGGGGCGTAG
back to top