mRNA_P-littoralis_Contig116.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.66.1
Unique NamemRNA_P-littoralis_Contig116.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig116.66.1 vs. uniprot
Match: A0A6H5L0H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.420e-7
Identity = 78/181 (43.09%), Postives = 93/181 (51.38%), Query Frame = 3 
Query: 1200 TLSPRGSWHLGALFGESDDDVQEAEGEP----GGCNWRLSDDEIEGEENA-LPKRRRQQRLSAGSRGVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGWADSLPPPAL--VDANSSSSTEGSNS---QSVREQNEQAELEAILAHFRKVDSHQLNLS 1712
            + SPRG W LGALF +SD               GCNWRLSDDE EG++   L KRR  +R +A   G  +       XXXXXXXX          XXXXXXXXXX                G AD    P++  VD  ++  + G  S   Q + EQ E AELEAI A FRKVDSH+L+LS
Sbjct:  346 SFSPRGPWRLGALFADSDXXXXXXXXXXXXGLAGCNWRLSDDENEGDDEIDLHKRRSPRRFAARKEGPVSARKKMRRXXXXXXXXRGSDGCNSAGXXXXXXXXXXAMVEKAG---------GGADGSLSPSVPVVDGTAAGGSPGKASTSQQGIEEQAEHAELEAIRAQFRKVDSHRLSLS 517
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BLAST of mRNA_P-littoralis_Contig116.66.1 vs. uniprot
Match: D7FZ06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ06_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 6.950e-7
Identity = 100/184 (54.35%), Postives = 112/184 (60.87%), Query Frame = 3 
Query: 1212 RGSWHLGALFGESDDDVQEAEGEP-----GGCNWRLSDDEIEGEENALPKRRRQQRLSAGSRGVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK-------GWADSLPPPAL--VDANSSSSTEGSNS---QSVREQNEQAELEAILAHFRKVDSHQLNLS 1712
            RG W LGALF +S                 GCNWRLSDDE EG++     +RR  R SA  RG   XXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXX        GWAD    P++  VDA ++  + G  S   Q + EQ EQAELEAI A FRKVDSH+L+LS
Sbjct:  380 RGPWRLGALFADSXXXXXXXXXXXXXXXLAGCNWRLSDDENEGDDEIDLHKRRSPRRSAAGRGXXXXXXXXXXXXXXXXXXDRGSDGCNSAXXXXXXXXXXXXXXXXXXXXXXXXXXAKVEQAGGWADGSLSPSVPVVDATAAGGSPGKASTSQQGIEEQAEQAELEAIRAQFRKVDSHRLSLS 563
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0H8_9PHAE6.420e-743.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ06_ECTSI6.950e-754.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:238102..241922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3088
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_002050.1
Cds size1644
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789479.911504-UTR-P-littoralis_Contig116:238101..2381751680789479.911504-UTR-P-littoralis_Contig116:238101..238175Pylaiella littoralis U1_48UTRP-littoralis_Contig116 238102..238175 +
1680789479.9434385-UTR-P-littoralis_Contig116:240552..2419221680789479.9434385-UTR-P-littoralis_Contig116:240552..241922Pylaiella littoralis U1_48UTRP-littoralis_Contig116 240553..241922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789479.9251592-CDS-P-littoralis_Contig116:238175..2382321680789479.9251592-CDS-P-littoralis_Contig116:238175..238232Pylaiella littoralis U1_48CDSP-littoralis_Contig116 238176..238232 +
1680789479.9342315-CDS-P-littoralis_Contig116:238965..2405521680789479.9342315-CDS-P-littoralis_Contig116:238965..240552Pylaiella littoralis U1_48CDSP-littoralis_Contig116 238966..240552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.66.1prot_P-littoralis_Contig116.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 238176..240552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.66.1

>prot_P-littoralis_Contig116.66.1 ID=prot_P-littoralis_Contig116.66.1|Name=mRNA_P-littoralis_Contig116.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=548bp
MTTPYSPAGTRTHPTATTKHFDTAMPSSTSPAAGKENAGSTAIMAAKPGR
RGVGPRSGTKSTTIPSRAPTATAVSSEKALVPPLSARRVWPKATRSSSRV
KAAAPKPRGLTSNTSSSQLVVNAASTRPEPVSSAGAAVGTAKDKSQRQKE
QQERQQQRVRPAVSLSLPVPLIHSSGESSSTGGVGKTRSSAAIRSGGLQA
GQSRQPQRGVAGKPAKKTLKPTKKKRQVSSSKLVGYSNSQPPRFPPQGRS
DFDFELDDSATDGDDGDDANDNRGSTRRSEGTSHRQGGTAAAGRKKKASG
GGGGGGGGGGGKYARAERTQASSGTSGGAGEGSDGGPPLALGSVAKATSI
SNARRSSSLRTATYSPRSMSSSGGETLSPRGSWHLGALFGESDDDVQEAE
GEPGGCNWRLSDDEIEGEENALPKRRRQQRLSAGSRGVTAGRKKRRASGG
AESEGGRNGAGGGGRGGRNKRLSTGGGGSGGGGGEAKEEQKGWADSLPPP
ALVDANSSSSTEGSNSQSVREQNEQAELEAILAHFRKVDSHQLNLSH*
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mRNA from alignment at P-littoralis_Contig116:238102..241922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.66.1 ID=mRNA_P-littoralis_Contig116.66.1|Name=mRNA_P-littoralis_Contig116.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3821bp|location=Sequence derived from alignment at P-littoralis_Contig116:238102..241922+ (Pylaiella littoralis U1_48)
CACGGAACCACGCAGCACATCCAGGGTCACAGATCACGATCGACATCTGC
CTCTCCGCCGATCTTCTCTTGATCATGACAACCCCGTATTCACCAGCTGG
TACACGCACACATCCCACAGCGACAACGAAGGTGAATCAAGCAAGAGCAT
CATCACTCTGCTCGCAATCTGCGACCCGAGAGAAATACGCGACAAACGCG
CGAAACCATAAGTACAGGTTGACAAATAAGTGCAGGTTGACAAATTCGTG
CAGGACATACACAATATTACCTCTGTTGCTTACCGTTTGGAGCCTCGATC
ATTCGCCTCTACTGACTCGTTCAGACCAGGCTGGCTTCTTCGGCGTTTCA
AACGCCAAACTACTGTTGCTGGTCGTTGCGAGCTTTGCACTGTGGCAGGC
TCGATTTCAATGTCTCTTTCCGTGTTTTGCTCTTCATGCGTTTTGTCTTT
CTACCCTCCCCTGTGTGTTGTTCAACGCATTTTAGTTCACTGCTGTTTTA
CTCTAAAGTTCAGTTCACTCTAAAGTTCCCTTCTCTGTATGTACTACTGT
AGCTGTAGATGTATCGGATGACACATGAAGTACAGCAGTACAGGTAGCCG
GGACGGGTTGAAAAGAGAGCCCACGTGTTCTCAAATCTGCGTGTGTCTTG
TGTTTTGAGTCTGCTCTGCGTCTGTGTGGTCCTCGAACGCAAATGACCCT
GCTGCTGCACGCTCCCTCCCGCCCTTTTTTTTTTGGTTTCGGATACTGAC
GACGAGTATCAGTTTTTCACAGATGCTCATGGTCATTCCATTTCACCCAA
ACTAACTGCCTTCGTCACCAACCCTCCCTCCCTCCCCGCCCGGCGTTTGA
TCCACATCAAACAGCACTTTGATACGGCGATGCCTAGCTCTACATCGCCC
GCGGCAGGAAAAGAGAATGCCGGCTCCACCGCCATCATGGCAGCGAAGCC
TGGTCGCCGCGGCGTAGGCCCTCGGAGTGGGACGAAAAGTACTACCATTC
CTTCTCGTGCGCCGACTGCGACCGCGGTGTCGTCGGAAAAAGCGCTTGTG
CCGCCCCTCTCCGCGCGGAGAGTGTGGCCGAAAGCTACGCGATCGAGCAG
CCGGGTCAAGGCTGCTGCCCCGAAGCCTCGAGGCCTGACCAGCAACACCT
CTTCTTCGCAACTAGTGGTTAATGCAGCATCGACCCGGCCGGAACCAGTG
AGTTCTGCGGGAGCGGCTGTGGGCACCGCCAAGGACAAGTCCCAGAGGCA
GAAAGAGCAACAGGAGAGGCAGCAGCAGCGTGTGAGGCCTGCGGTGTCAC
TGTCCTTACCAGTGCCTCTGATCCATTCTTCTGGCGAGAGCAGCAGTACC
GGCGGCGTTGGCAAAACGAGGAGTAGCGCCGCCATCAGGAGCGGGGGGTT
GCAGGCGGGCCAGTCGAGGCAACCGCAGAGGGGGGTGGCAGGAAAACCCG
CGAAAAAGACTCTCAAGCCTACGAAGAAAAAGAGACAGGTCAGTAGTAGC
AAGCTGGTGGGGTATTCGAACTCCCAGCCGCCCCGCTTTCCCCCTCAAGG
CCGTTCGGACTTCGATTTCGAGCTCGACGATTCAGCAACGGACGGCGACG
ACGGCGACGACGCCAACGACAACAGAGGCTCTACGCGACGATCGGAAGGC
ACCAGTCACCGCCAAGGTGGAACCGCAGCAGCGGGAAGGAAGAAGAAGGC
ATCAGGTGGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGGAAAGTATGCTC
GGGCAGAGCGAACTCAGGCATCCTCGGGCACCAGTGGAGGGGCCGGGGAG
GGATCCGATGGCGGGCCGCCACTGGCACTAGGTTCAGTGGCGAAAGCGAC
AAGCATTTCGAACGCACGACGGAGTTCTTCCCTCCGTACCGCGACTTATT
CTCCCCGCAGCATGTCGAGCAGCGGCGGTGAGACTCTTTCTCCGCGGGGA
TCGTGGCACCTGGGTGCCCTGTTCGGCGAGTCGGATGATGACGTCCAGGA
GGCGGAGGGGGAGCCCGGAGGGTGCAACTGGAGGCTCTCGGACGACGAGA
TCGAAGGAGAAGAGAACGCCTTGCCGAAGAGGAGGAGGCAGCAGCGGTTG
TCTGCTGGGAGTCGGGGTGTTACTGCTGGTCGGAAAAAGCGCAGGGCGAG
TGGTGGTGCCGAGAGCGAAGGCGGCCGGAATGGTGCTGGTGGAGGAGGCC
GTGGAGGCCGCAACAAACGCCTTTCCACAGGCGGCGGCGGCAGTGGCGGT
GGCGGTGGCGAGGCCAAGGAGGAGCAGAAAGGATGGGCCGATAGTCTCCC
GCCGCCCGCCCTCGTCGACGCTAACAGCAGCAGCAGCACTGAGGGGTCGA
ATAGCCAAAGCGTGAGGGAGCAGAACGAGCAGGCGGAGTTGGAGGCGATT
CTGGCGCATTTCAGAAAGGTGGACTCGCATCAGCTGAACCTCTCGCATTA
GGGTGCATGCCGCTCGGGCTGGGGGGGCTGATTGATGCCACGGCAAGCGG
GGTGTATGAAATAGAATGTGAGGCGCGAGCGCATTGTCGCGATACCCCCT
CTGTTTCCCGTATATAGAAGTGCTGCCTTTTGCTGGGGTTAGCTGGGAGA
TGGCGGCGCCTGCGTTCATCGTGGCGACGCCCGGCAGGCAAGCGCGTACG
GAATCCGTGTGTTGAGGTGGTGAGCTTGTGCCGACAAGGGGGGAGGAGTT
GGTGGAAAATGATATAGATTGGTTCCTTGGGGGCAAGAGGTGTTGCATTT
TCACTGTATATTTGTGTACAAGTATGTGGGCTAGGGTCCCGTGAACCTAA
GCGAGGAAGTGGGGTATCAATTGCACGGATCGTGATTTCCCTTGTATGTA
GTGTACCTTAGCTGGGTGTGACCTCCGCCTATGGTGCTGATTGTTCGAGA
ATCAGAGAACAGCGGTAGAGAGGCTCGCCGGCGGCATTTTCTGTCCTGCT
GCGTGGGTGTTGTATGGTATGTATGATGTGATGCGCGTTGTTCTTCGCGC
TAGTGACGGATCTACTGATGAGCCTGGGATAGCTGGTTCGGAGTGAATAT
TTCTGCCCCAGAGGCCTGCGCTTGTCTTTGCTAGTCACCGCTTGATGTTG
AATGCGGGTGAGCAGGCACCCAAACAGCCAAGCTTGTTTCAATAGGGCGA
TGTTTTTTCATATAAACCTGTACACAAACGTGTTCGTAGTCTTGTGTACC
TGGCATAGAATAGGGGTTGCCATCTACTGTTGATTGGTGCGTCGGCAGCA
TTGTATTTATGCCCCCGTTGCTTTGTCGATTCCCCTTCGATAACAGCAGT
GCGTTGACCGGGGGATGTTGTGGCCCCCAAATCTCTGGCACGGGACCAAG
TGAATGCGGCTCCTGTCGCGATACGCATCATTGTTGTGTGCGACCTTTTA
GATTTCATGCTTGCCTATCTTTTTATCATCGTTTACTGTGTTGTGCTTCG
CTTATGGCGTTGACCTTCTACGGTAAGTGTGACCCATTTTGATGCCCCCG
GATGTAAATACACCGAAAGGTTTAGACCGGCGTCCAGAAGAATAGCGGGG
ATGAAACGATACACACACAAGACGCAGACACACGATTGAGTTGCTCACGG
AGATGAAGTTATTGGATCCCTTGTTATTTTGGTGGGTGGGTGCTCTTACA
CCATGGTGTACGTTGTGTTTTGTTATTTTTGTACCTCGTCTGTGGCAGTT
GCATGTCTTTGAGTCTTAGAAAGTACCGGTACGCGCGTCAGCAACGGTTC
CCCCCCCCCCCTTGAAGAAATGATGTATCCGCTGTGTCCCCGGCTTGAAA
TCAAAGGAGCGTATCATGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:238102..241922+

>mRNA_P-littoralis_Contig116.66.1 ID=mRNA_P-littoralis_Contig116.66.1|Name=mRNA_P-littoralis_Contig116.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1644bp|location=Sequence derived from alignment at P-littoralis_Contig116:238102..241922+ (Pylaiella littoralis U1_48)
ATGACAACCCCGTATTCACCAGCTGGTACACGCACACATCCCACAGCGAC
AACGAAGCACTTTGATACGGCGATGCCTAGCTCTACATCGCCCGCGGCAG
GAAAAGAGAATGCCGGCTCCACCGCCATCATGGCAGCGAAGCCTGGTCGC
CGCGGCGTAGGCCCTCGGAGTGGGACGAAAAGTACTACCATTCCTTCTCG
TGCGCCGACTGCGACCGCGGTGTCGTCGGAAAAAGCGCTTGTGCCGCCCC
TCTCCGCGCGGAGAGTGTGGCCGAAAGCTACGCGATCGAGCAGCCGGGTC
AAGGCTGCTGCCCCGAAGCCTCGAGGCCTGACCAGCAACACCTCTTCTTC
GCAACTAGTGGTTAATGCAGCATCGACCCGGCCGGAACCAGTGAGTTCTG
CGGGAGCGGCTGTGGGCACCGCCAAGGACAAGTCCCAGAGGCAGAAAGAG
CAACAGGAGAGGCAGCAGCAGCGTGTGAGGCCTGCGGTGTCACTGTCCTT
ACCAGTGCCTCTGATCCATTCTTCTGGCGAGAGCAGCAGTACCGGCGGCG
TTGGCAAAACGAGGAGTAGCGCCGCCATCAGGAGCGGGGGGTTGCAGGCG
GGCCAGTCGAGGCAACCGCAGAGGGGGGTGGCAGGAAAACCCGCGAAAAA
GACTCTCAAGCCTACGAAGAAAAAGAGACAGGTCAGTAGTAGCAAGCTGG
TGGGGTATTCGAACTCCCAGCCGCCCCGCTTTCCCCCTCAAGGCCGTTCG
GACTTCGATTTCGAGCTCGACGATTCAGCAACGGACGGCGACGACGGCGA
CGACGCCAACGACAACAGAGGCTCTACGCGACGATCGGAAGGCACCAGTC
ACCGCCAAGGTGGAACCGCAGCAGCGGGAAGGAAGAAGAAGGCATCAGGT
GGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGGAAAGTATGCTCGGGCAGA
GCGAACTCAGGCATCCTCGGGCACCAGTGGAGGGGCCGGGGAGGGATCCG
ATGGCGGGCCGCCACTGGCACTAGGTTCAGTGGCGAAAGCGACAAGCATT
TCGAACGCACGACGGAGTTCTTCCCTCCGTACCGCGACTTATTCTCCCCG
CAGCATGTCGAGCAGCGGCGGTGAGACTCTTTCTCCGCGGGGATCGTGGC
ACCTGGGTGCCCTGTTCGGCGAGTCGGATGATGACGTCCAGGAGGCGGAG
GGGGAGCCCGGAGGGTGCAACTGGAGGCTCTCGGACGACGAGATCGAAGG
AGAAGAGAACGCCTTGCCGAAGAGGAGGAGGCAGCAGCGGTTGTCTGCTG
GGAGTCGGGGTGTTACTGCTGGTCGGAAAAAGCGCAGGGCGAGTGGTGGT
GCCGAGAGCGAAGGCGGCCGGAATGGTGCTGGTGGAGGAGGCCGTGGAGG
CCGCAACAAACGCCTTTCCACAGGCGGCGGCGGCAGTGGCGGTGGCGGTG
GCGAGGCCAAGGAGGAGCAGAAAGGATGGGCCGATAGTCTCCCGCCGCCC
GCCCTCGTCGACGCTAACAGCAGCAGCAGCACTGAGGGGTCGAATAGCCA
AAGCGTGAGGGAGCAGAACGAGCAGGCGGAGTTGGAGGCGATTCTGGCGC
ATTTCAGAAAGGTGGACTCGCATCAGCTGAACCTCTCGCATTAG
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