mRNA_P-littoralis_Contig614.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig614.23.1
Unique NamemRNA_P-littoralis_Contig614.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 9.380e-105
Identity = 176/246 (71.54%), Postives = 200/246 (81.30%), Query Frame = 1
Query:  130 GPVRK--------LYSSTKIVARLVKPWNDKSREWMERSNRESACEKAEDSEGTFNRAANEPSGNTSIPVLVKLLSGGLCAEQGEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLS 843
            GPVRK        LY+STKI+ARLV+PW D SREWMER  RES  EKA++ +GT +RAANEP GNTSIPV+VKLL  GLC +QG+GDI+I +GVYYKRAEL  LQYYYD SY+ DPQNI VVFG+T VKIDGGVHVVKSVDHGKYTL GRESTI  W+LLE RCD+GVTL +DL+RFI+HLV KYTVMMGSVVP+L+ V T MLWNPNDA+  AN  GD  DPESNM   EL+ IKERVDT+RDLS
Sbjct:  176 GPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERK-RESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTGVLTVMLWNPNDAV--ANKCGDDTDPESNMKTSELMSIKERVDTLRDLS 418          
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 5.770e-79
Identity = 131/176 (74.43%), Postives = 146/176 (82.95%), Query Frame = 1
Query:  355 GEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLSLAIFTKIPVEDTL 882
            GEGDI+I +GVYYKRAEL  LQYYYD SY FDP+NI VV  ET VKID  +H VKSVDHGKYTL GRES I  W+LLENRCD+ VTLD+DL+RFI+HLV KYTVMMGSVVP+LS V TGMLWNPNDAIDRA+ SGD  DPE  M + EL+ IK RVDT+RDLSLA+FTKIPVE TL
Sbjct:  102 GEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSGVVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277          
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.000e-39
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 1
Query:  355 GEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHL 648
            GE DI+I+EGVY+KR E+  L+YYYD SYMFDP++I VVFGETSV+IDGGVHVVKSVD GKY L G +STI  W+LL NRC +GVTLD+DL+RFI HL
Sbjct:  102 GEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199          
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 2.310e-37
Identity = 103/229 (44.98%), Postives = 139/229 (60.70%), Query Frame = 1
Query:  220 SNRESACEKAEDSEGTFNRAANEP-SGNTSIPVLVKLLSGGLCAEQGEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTT-----GMLWNPNDAIDRANGSGDGIDPESNMAVRE-LVLIKERVDTVRDLSLAIFTKIPVEDTLP 885
            ++R  A EKA+  E T  R  NEP S  TSIP++ KLL+ GLC +  +G I+I +GV++KRA L  L+ Y++  Y+FDP++I V  G T V ID    VV+S D G+Y+L    S +  W +LENR D GVTL+ + +RFIIHLV  Y  MM  VVP + + +T      M+WNP +A  R          E+N   RE L  I  RV+T+RDL+L IFT   V+DTLP
Sbjct:  706 ASRAKAAEKAKHFENTCPRTPNEPPSSITSIPLIAKLLTRGLCDDPLDG-IEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDG-SVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEAGKR----------ETNKERREELDQIINRVNTLRDLTLRIFTGAAVKDTLP 922          
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 134 bits (336), Expect = 4.570e-33
Identity = 90/247 (36.44%), Postives = 133/247 (53.85%), Query Frame = 1
Query:  154 STKIVARLVKPWNDKSREWMERSNRESACEKAEDSEGTFNRAANEPSGNTSIPVLVKLLSGGLCAEQGEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSD---VTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLSLAIFTKIPVEDTLP 885
            ST +   L +P       ++E +NR ++ E  E+   T  RA N+P+G  +I    + L+  + +   +  I+I EGVY+ R+    ++  Y+L Y FDP +I V  G T+V     V  V++ D+G YTLG ++S +  W +LENR   GVTL+ DL+R+I  LV  Y VM  + VP + +   V  GM+ +    +  A  S DGID  S +   EL+ IK   D VRD +L IFT   V D LP
Sbjct:   99 STTLAQELEEPILACMEPFLE-NNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLA--MLSHDKKDSIEIKEGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342          
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: A0A6H5JFX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 9.900e-9
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  583 LENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLSLAIFTKIPVEDTL 882
            +E RCD+G++LD++L+R                                     AN SG G DPESNM   EL+ IK RVDT+RD+SLA+FTKI ++ TL
Sbjct:   75 VETRCDEGLSLDTNLRR-------------------------------------ANRSGGGTDPESNMKTSELMSIKVRVDTLRDVSLAVFTKILIQSTL 137          
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: A0A6H5J7T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T3_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.140e-5
Identity = 40/104 (38.46%), Postives = 51/104 (49.04%), Query Frame = 1
Query:  574 WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLSLAIFTKIPVEDTLP 885
            W LLE R D  VTL+++ +RF+IHLV  Y  M+  VVP+                  AN  G            EL  I  RV+T+RDL L +FT   V+DTLP
Sbjct:  200 WGLLEKRTDGVVTLEAEQRRFVIHLVTTYVNMITHVVPARL----------------ANMRGK--------RKEELDQIINRVNTLRDLMLRVFTDAAVKDTLP 279          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE9.380e-10571.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ27_ECTSI5.770e-7974.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQV3_ECTSI1.000e-3971.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPM1_ECTSI2.310e-3744.98PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
UPI0000161E594.570e-3336.44hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JFX7_9PHAE9.900e-939.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7T3_9PHAE4.140e-538.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig614contigP-littoralis_Contig614:98374..99282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHJ0
Model size885
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.92e-10
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791280.55819-UTR-P-littoralis_Contig614:98373..986851680791280.55819-UTR-P-littoralis_Contig614:98373..98685Pylaiella littoralis U1_48UTRP-littoralis_Contig614 98374..98685 -
1680791280.5988579-UTR-P-littoralis_Contig614:99261..992821680791280.5988579-UTR-P-littoralis_Contig614:99261..99282Pylaiella littoralis U1_48UTRP-littoralis_Contig614 99262..99282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791280.5708284-CDS-P-littoralis_Contig614:98685..991141680791280.5708284-CDS-P-littoralis_Contig614:98685..99114Pylaiella littoralis U1_48CDSP-littoralis_Contig614 98686..99114 -
1680791280.5835252-CDS-P-littoralis_Contig614:99138..992611680791280.5835252-CDS-P-littoralis_Contig614:99138..99261Pylaiella littoralis U1_48CDSP-littoralis_Contig614 99139..99261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig614.23.1prot_P-littoralis_Contig614.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig614 98686..99261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig614.23.1

>prot_P-littoralis_Contig614.23.1 ID=prot_P-littoralis_Contig614.23.1|Name=mRNA_P-littoralis_Contig614.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MDVGDFGGDFGDGGSGGSGGGGGNDKVGGGGTGGGSGPVRKLYSSTKIVA
RLVKPWNDKSREWMERSNRESACEKAEDSEGTFNRAANEPSGNTSIPVLV
KLLSGGLCAEQGEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVV
FGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*
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mRNA from alignment at P-littoralis_Contig614:98374..99282-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig614.23.1 ID=mRNA_P-littoralis_Contig614.23.1|Name=mRNA_P-littoralis_Contig614.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=909bp|location=Sequence derived from alignment at P-littoralis_Contig614:98374..99282- (Pylaiella littoralis U1_48)
GGAGACAATGGTCTCGAGACCATGGACGTTGGCGACTTTGGTGGCGACTT TGGTGACGGTGGCAGCGGTGGCAGCGGTGGCGGCGGTGGCAACGACAAGG TTGGTGGCGGTGGCACTGGTGGTGGCAGCGGCCCCGTGCGGAAGGTCGCG TACAAAAAATGACCAAAGCTATACTCTTCTACCAAAATAGTCGCACGCCT GGTTAAGCCGTGGAATGACAAAAGTCGCGAGTGGATGGAAAGAAGCAACA GAGAATCGGCGTGTGAAAAAGCTGAAGACAGTGAGGGTACGTTCAACCGC GCAGCAAATGAACCCAGTGGAAACACTTCGATACCGGTCTTGGTCAAACT ACTGAGTGGTGGCCTGTGTGCTGAACAGGGAGAGGGTGATATCGATATCT ATGAAGGGGTGTACTACAAGCGCGCCGAGCTTTGGCGTTTGCAGTATTAC TACGACTTGTCCTACATGTTCGACCCGCAGAACATCGAAGTCGTTTTCGG CGAGACGAGTGTCAAGATCGATGGCGGGGTCCACGTGGTGAAATCAGTCG ATCACGGCAAATACACACTGGGAGGTCGGGAATCCACAATCATCTAGTGG CAGCTCCTGGAAAACCGGTGCGATGATGGGGTGACACTGGACAGCGACCT CCAGCGGTTCATCATCCATCTGGTGGCAAAGTATACGGTGATGATGGGTT CGGTTGTACCGTCTCTCAGCGATGTGACAACTGGGATGCTCTGGAACCCG AATGATGCGATAGACAGAGCTAATGGCAGCGGTGACGGCATCGACCCAGA GAGCAACATGGCGGTCCGCGAGCTGGTGTTGATCAAGGAGCGCGTGGATA CTGTGCGGGACCTGTCGCTGGCCATCTTCACCAAAATCCCCGTGGAAGAC ACTCTGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig614:98374..99282-

>mRNA_P-littoralis_Contig614.23.1 ID=mRNA_P-littoralis_Contig614.23.1|Name=mRNA_P-littoralis_Contig614.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig614:98374..99282- (Pylaiella littoralis U1_48)
ATGGACGTTGGCGACTTTGGTGGCGACTTTGGTGACGGTGGCAGCGGTGG
CAGCGGTGGCGGCGGTGGCAACGACAAGGTTGGTGGCGGTGGCACTGGTG
GTGGCAGCGGCCCCGTGCGGAAGCTATACTCTTCTACCAAAATAGTCGCA
CGCCTGGTTAAGCCGTGGAATGACAAAAGTCGCGAGTGGATGGAAAGAAG
CAACAGAGAATCGGCGTGTGAAAAAGCTGAAGACAGTGAGGGTACGTTCA
ACCGCGCAGCAAATGAACCCAGTGGAAACACTTCGATACCGGTCTTGGTC
AAACTACTGAGTGGTGGCCTGTGTGCTGAACAGGGAGAGGGTGATATCGA
TATCTATGAAGGGGTGTACTACAAGCGCGCCGAGCTTTGGCGTTTGCAGT
ATTACTACGACTTGTCCTACATGTTCGACCCGCAGAACATCGAAGTCGTT
TTCGGCGAGACGAGTGTCAAGATCGATGGCGGGGTCCACGTGGTGAAATC
AGTCGATCACGGCAAATACACACTGGGAGGTCGGGAATCCACAATCATCT
AG
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