mRNA_P-littoralis_Contig614.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE) HSP 1 Score: 338 bits (867), Expect = 9.380e-105 Identity = 176/246 (71.54%), Postives = 200/246 (81.30%), Query Frame = 1
Query: 130 GPVRK--------LYSSTKIVARLVKPWNDKSREWMERSNRESACEKAEDSEGTFNRAANEPSGNTSIPVLVKLLSGGLCAEQGEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLS 843
GPVRK LY+STKI+ARLV+PW D SREWMER RES EKA++ +GT +RAANEP GNTSIPV+VKLL GLC +QG+GDI+I +GVYYKRAEL LQYYYD SY+ DPQNI VVFG+T VKIDGGVHVVKSVDHGKYTL GRESTI W+LLE RCD+GVTL +DL+RFI+HLV KYTVMMGSVVP+L+ V T MLWNPNDA+ AN GD DPESNM EL+ IKERVDT+RDLS
Sbjct: 176 GPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERK-RESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTGVLTVMLWNPNDAV--ANKCGDDTDPESNMKTSELMSIKERVDTLRDLS 418
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI) HSP 1 Score: 260 bits (665), Expect = 5.770e-79 Identity = 131/176 (74.43%), Postives = 146/176 (82.95%), Query Frame = 1
Query: 355 GEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLSLAIFTKIPVEDTL 882
GEGDI+I +GVYYKRAEL LQYYYD SY FDP+NI VV ET VKID +H VKSVDHGKYTL GRES I W+LLENRCD+ VTLD+DL+RFI+HLV KYTVMMGSVVP+LS V TGMLWNPNDAIDRA+ SGD DPE M + EL+ IK RVDT+RDLSLA+FTKIPVE TL
Sbjct: 102 GEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSGVVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.000e-39 Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 1
Query: 355 GEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHL 648
GE DI+I+EGVY+KR E+ L+YYYD SYMFDP++I VVFGETSV+IDGGVHVVKSVD GKY L G +STI W+LL NRC +GVTLD+DL+RFI HL
Sbjct: 102 GEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI) HSP 1 Score: 151 bits (381), Expect = 2.310e-37 Identity = 103/229 (44.98%), Postives = 139/229 (60.70%), Query Frame = 1
Query: 220 SNRESACEKAEDSEGTFNRAANEP-SGNTSIPVLVKLLSGGLCAEQGEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTT-----GMLWNPNDAIDRANGSGDGIDPESNMAVRE-LVLIKERVDTVRDLSLAIFTKIPVEDTLP 885
++R A EKA+ E T R NEP S TSIP++ KLL+ GLC + +G I+I +GV++KRA L L+ Y++ Y+FDP++I V G T V ID VV+S D G+Y+L S + W +LENR D GVTL+ + +RFIIHLV Y MM VVP + + +T M+WNP +A R E+N RE L I RV+T+RDL+L IFT V+DTLP
Sbjct: 706 ASRAKAAEKAKHFENTCPRTPNEPPSSITSIPLIAKLLTRGLCDDPLDG-IEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDG-SVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEAGKR----------ETNKERREELDQIINRVNTLRDLTLRIFTGAAVKDTLP 922
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59) HSP 1 Score: 134 bits (336), Expect = 4.570e-33 Identity = 90/247 (36.44%), Postives = 133/247 (53.85%), Query Frame = 1
Query: 154 STKIVARLVKPWNDKSREWMERSNRESACEKAEDSEGTFNRAANEPSGNTSIPVLVKLLSGGLCAEQGEGDIDIYEGVYYKRAELWRLQYYYDLSYMFDPQNIEVVFGETSVKIDGGVHVVKSVDHGKYTLGGRESTII*WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSD---VTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLSLAIFTKIPVEDTLP 885
ST + L +P ++E +NR ++ E E+ T RA N+P+G +I + L+ + + + I+I EGVY+ R+ ++ Y+L Y FDP +I V G T+V V V++ D+G YTLG ++S + W +LENR GVTL+ DL+R+I LV Y VM + VP + + V GM+ + + A S DGID S + EL+ IK D VRD +L IFT V D LP
Sbjct: 99 STTLAQELEEPILACMEPFLE-NNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLA--MLSHDKKDSIEIKEGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: A0A6H5JFX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX7_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 9.900e-9 Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query: 583 LENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLSLAIFTKIPVEDTL 882
+E RCD+G++LD++L+R AN SG G DPESNM EL+ IK RVDT+RD+SLA+FTKI ++ TL
Sbjct: 75 VETRCDEGLSLDTNLRR-------------------------------------ANRSGGGTDPESNMKTSELMSIKVRVDTLRDVSLAVFTKILIQSTL 137
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Match: A0A6H5J7T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T3_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 4.140e-5 Identity = 40/104 (38.46%), Postives = 51/104 (49.04%), Query Frame = 1
Query: 574 WQLLENRCDDGVTLDSDLQRFIIHLVAKYTVMMGSVVPSLSDVTTGMLWNPNDAIDRANGSGDGIDPESNMAVRELVLIKERVDTVRDLSLAIFTKIPVEDTLP 885
W LLE R D VTL+++ +RF+IHLV Y M+ VVP+ AN G EL I RV+T+RDL L +FT V+DTLP
Sbjct: 200 WGLLEKRTDGVVTLEAEQRRFVIHLVTTYVNMITHVVPARL----------------ANMRGK--------RKEELDQIINRVNTLRDLMLRVFTDAAVKDTLP 279 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig614.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig614.23.1 >prot_P-littoralis_Contig614.23.1 ID=prot_P-littoralis_Contig614.23.1|Name=mRNA_P-littoralis_Contig614.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp MDVGDFGGDFGDGGSGGSGGGGGNDKVGGGGTGGGSGPVRKLYSSTKIVAback to top mRNA from alignment at P-littoralis_Contig614:98374..99282- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig614.23.1 ID=mRNA_P-littoralis_Contig614.23.1|Name=mRNA_P-littoralis_Contig614.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=909bp|location=Sequence derived from alignment at P-littoralis_Contig614:98374..99282- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig614:98374..99282- >mRNA_P-littoralis_Contig614.23.1 ID=mRNA_P-littoralis_Contig614.23.1|Name=mRNA_P-littoralis_Contig614.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig614:98374..99282- (Pylaiella littoralis U1_48)back to top |