mRNA_P-littoralis_Contig614.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig614.15.1
Unique NamemRNA_P-littoralis_Contig614.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: A0A1Z5KBW7_FISSO (UV excision repair protein RAD23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW7_FISSO)

HSP 1 Score: 58.2 bits (139), Expect = 2.080e-7
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 2 
Query:    2 GQMRPYQFRLAMRTVNAGGVLDAGGGRTGITIHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNSKGEG 241
            GQM P Q +  M  +  G   +  GG+    + LTEEE AAV RL  +GFD+++A  ++     NE LAAN+L++S G+G
Sbjct:  324 GQMPPEQLQQFMAHMGGG---EGHGGQQ--VLRLTEEEMAAVDRLTEMGFDRSEAAQAFLACDKNEALAANLLMDSMGDG 398
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: A0A813H1J7_POLGL (UV excision repair protein RAD23 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H1J7_POLGL)

HSP 1 Score: 57.4 bits (137), Expect = 3.810e-7
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:   14 PYQFRLAMRTVNAGGVLDAG-GGRTG-ITIHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNSKGE 238
            P      ++   AGG +  G GG  G + I LTEEE AAV RLAALGFDK +A  +Y     NEE+AAN L ++ G+
Sbjct:  320 PQILLQMIQAAAAGGGMPGGPGGSPGAMQIQLTEEENAAVERLAALGFDKNNAAQAYLACDKNEEMAANFLFDNGGD 396
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: D8TQP4_VOLCA (Ubiquitin receptor RAD23 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQP4_VOLCA)

HSP 1 Score: 55.8 bits (133), Expect = 1.290e-6
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:   74 GGRTGITIHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNS 229
            GG  G+ + LTE++ AA+TRLAALGFD+   L++Y     NEE+AAN L  +
Sbjct:  312 GGEGGMVVELTEDDEAAITRLAALGFDRNACLEAYLACDKNEEMAANFLAEN 363
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: A0A1Y1UX38_9FUNG (UV excision repair protein RAD23 n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1UX38_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 1.300e-6
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:   86 GITIHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNSKGE 238
            G+ I +++EEA A+TRL ALGF+++  +++YF    NEELAAN L N++ E
Sbjct:  328 GVPIQISQEEAEAITRLEALGFERSLVIEAYFACDKNEELAANYLFNTQNE 378
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: A0A1E7FAG2_9STRA (XPC-binding-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAG2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.360e-6
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:   68 AGGGRTG--ITIHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNSKGEG 241
            AGGG  G    + LT+EE AAV RLA +GFD+ +A  +Y     NE LAAN+L++S G+G
Sbjct:  367 AGGGGPGGPQVLRLTQEEMAAVDRLADMGFDRTEAAQAYLACDKNEALAANLLMDSMGDG 426
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: A0A1Y3N2W0_PIRSE (UV excision repair protein RAD23 n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N2W0_PIRSE)

HSP 1 Score: 53.9 bits (128), Expect = 2.620e-6
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:   89 ITIHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNSKGE 238
            + I +++EEA A+TRL ALGF+++  +++YF    NEELAAN L N++ E
Sbjct:  136 VPIQISQEEAEAITRLEALGFERSLVIEAYFACDKNEELAANYLFNTQNE 185
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: A0A8J4CCS9_9CHLO (Ubiquitin receptor RAD23 n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4CCS9_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 4.530e-6
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 2 
Query:   86 GITIHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNS 229
            G+ + LTEE+ AA+TRLAALGFD+   L++Y     NEE+AAN L  +
Sbjct:  336 GMVVELTEEDEAAITRLAALGFDRTACLEAYLACDKNEEMAANFLAEN 383
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: A0A7S1Z1S2_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z1S2_TRICV)

HSP 1 Score: 54.3 bits (129), Expect = 4.720e-6
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 2 
Query:    2 GQMRPYQFR----LAMRTVNAGGVLDAGGGRTGIT-----------IHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLN 226
            GQM P QFR    +AM+   AG      GG                + L+EEE AAV RLA +GFD+A+A  +Y     NE LAAN+L++
Sbjct:  373 GQMPPEQFREYMSVAMQGGGAGAAXXMMGGEXXXXXXXXXXXXPQILRLSEEEMAAVNRLADMGFDRAEAAQAYIACDKNEALAANLLMD 462
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: B7FSN5_PHATC (RAD23 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSN5_PHATC)

HSP 1 Score: 53.9 bits (128), Expect = 6.330e-6
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 2 
Query:   95 IHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNSKGEG 241
            + LTEEE AAV RLA +GFD+++A  ++     NE LAAN+L++S G+G
Sbjct:  359 LRLTEEEMAAVDRLAEMGFDRSEAAQAFLACDKNEALAANLLMDSMGDG 407
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BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Match: A0A1Y2AC25_9FUNG (UV excision repair protein RAD23 n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2AC25_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 1.160e-5
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:   71 GGGRTGITIHLTEEEAAAVTRLAALGFDKADALDSYFEYGTNEELAANVLLNSKGE 238
            GGG   + I +++EEA A++RL ALGF+++  +++YF    NEELAAN L N++ E
Sbjct:  342 GGGA--VPIQISQEEAEAISRLEALGFERSLVIEAYFACDKNEELAANYLFNTQNE 395
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig614.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A1Z5KBW7_FISSO2.080e-741.25UV excision repair protein RAD23 n=2 Tax=Fistulife... [more]
A0A813H1J7_POLGL3.810e-746.75UV excision repair protein RAD23 n=1 Tax=Polarella... [more]
D8TQP4_VOLCA1.290e-650.00Ubiquitin receptor RAD23 n=1 Tax=Volvox carteri f.... [more]
A0A1Y1UX38_9FUNG1.300e-649.02UV excision repair protein RAD23 n=1 Tax=Piromyces... [more]
A0A1E7FAG2_9STRA1.360e-650.00XPC-binding-domain-containing protein n=1 Tax=Frag... [more]
A0A1Y3N2W0_PIRSE2.620e-648.00UV excision repair protein RAD23 n=1 Tax=Piromyces... [more]
A0A8J4CCS9_9CHLO4.530e-652.08Ubiquitin receptor RAD23 n=2 Tax=Volvox TaxID=3066... [more]
A0A7S1Z1S2_TRICV4.720e-640.00Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
B7FSN5_PHATC6.330e-651.02RAD23 n=3 Tax=Phaeodactylum tricornutum TaxID=2850... [more]
A0A1Y2AC25_9FUNG1.160e-546.43UV excision repair protein RAD23 n=1 Tax=Neocallim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig614contigP-littoralis_Contig614:62748..63358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FMK9
Preferred nameRad23
PFAMsUBA,XPC-binding,ubiquitin
Model size369
Max annot lvl2759|Eukaryota
KEGG koko:K10839,ko:K18180
KEGG Pathwayko03420,ko04141,ko04714,map03420,map04141,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0015630,GO:0016579,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031593,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045070,GO:0045732,GO:0045787,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140030,GO:1901360,GO:1901363,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903900,GO:1903902,GO:1990381,GO:2000058,GO:2000060
Exons2
Evalue5.42e-12
EggNOG OGsCOG5272@1|root,KOG0011@2759|Eukaryota
Descriptiondamaged DNA binding
Cds size360
COG categoryO
BRITEko00000,ko00001,ko03029,ko03051,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791280.498159-CDS-P-littoralis_Contig614:62747..628201680791280.498159-CDS-P-littoralis_Contig614:62747..62820Pylaiella littoralis U1_48CDSP-littoralis_Contig614 62748..62820 -
1680791280.512453-CDS-P-littoralis_Contig614:63064..633511680791280.512453-CDS-P-littoralis_Contig614:63064..63351Pylaiella littoralis U1_48CDSP-littoralis_Contig614 63065..63351 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791280.524114-UTR-P-littoralis_Contig614:63351..633581680791280.524114-UTR-P-littoralis_Contig614:63351..63358Pylaiella littoralis U1_48UTRP-littoralis_Contig614 63352..63358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig614.15.1prot_P-littoralis_Contig614.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig614 62748..63351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig614.15.1

>prot_P-littoralis_Contig614.15.1 ID=prot_P-littoralis_Contig614.15.1|Name=mRNA_P-littoralis_Contig614.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MRPYQFRLAMRTVNAGGVLDAGGGRTGITIHLTEEEAAAVTRLAALGFDK
ADALDSYFEYGTNEELAANVLLNSKGEGIQACAQATPTEADNPEDRSYGV
ERRNVVRLTTEASAAVTRLK
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mRNA from alignment at P-littoralis_Contig614:62748..63358-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig614.15.1 ID=mRNA_P-littoralis_Contig614.15.1|Name=mRNA_P-littoralis_Contig614.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=611bp|location=Sequence derived from alignment at P-littoralis_Contig614:62748..63358- (Pylaiella littoralis U1_48)
CGGTCAGATGCGGCCGTATCAGTTTCGACTGGCGATGAGGACGGTGAATG
CCGGGGGAGTTCTAGATGCGGGAGGCGGTCGCACCGGGATTACGATTCAC
CTGACGGAGGAAGAAGCAGCAGCAGTCACCCGCCTCGCAGCGCTTGGGTT
CGACAAAGCAGATGCACTGGATTCCTATTTTGAGTACGGCACGAACGAAG
AGCTTGCGGCGAATGTACTTCTCAACAGTAAGGGGGAAGGTATCCAGGCA
TGCGCCCAAGCAACACCCACTGAAGCGGACAACCCAGAAGACAGGTGCCT
GTTGTAGATGATTCGTTTGGGGTACGTGCTGTGCCATCGGGTCGAGATGT
TCGGAGTTTCTCGTCGCGCAAAAATGTGGACAAGTCCAATCAACCAAAAC
GATATCGCTGTCTTTGAGCGGCTCAATACCCTCGTACAACCAAGCACAGG
GACGTGGTGCGCTTGCCGACTGACCACGAGTATTGTATGAATGTCGTCCG
AATGGTAGATTTTATCTCTTTGCGACCCCTCCCCGCAGGTCCTACGGTGT
TGAAAGGCGAAATGTGGTTCGTCTTACAACCGAAGCTTCGGCTGCCGTAA
CACGTCTCAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig614:62748..63358-

>mRNA_P-littoralis_Contig614.15.1 ID=mRNA_P-littoralis_Contig614.15.1|Name=mRNA_P-littoralis_Contig614.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig614:62748..63358- (Pylaiella littoralis U1_48)
ATGCGGCCGTATCAGTTTCGACTGGCGATGAGGACGGTGAATGCCGGGGG
AGTTCTAGATGCGGGAGGCGGTCGCACCGGGATTACGATTCACCTGACGG
AGGAAGAAGCAGCAGCAGTCACCCGCCTCGCAGCGCTTGGGTTCGACAAA
GCAGATGCACTGGATTCCTATTTTGAGTACGGCACGAACGAAGAGCTTGC
GGCGAATGTACTTCTCAACAGTAAGGGGGAAGGTATCCAGGCATGCGCCC
AAGCAACACCCACTGAAGCGGACAACCCAGAAGACAGGTCCTACGGTGTT
GAAAGGCGAAATGTGGTTCGTCTTACAACCGAAGCTTCGGCTGCCGTAAC
ACGTCTCAAA
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