mRNA_P-littoralis_Contig614.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig614.14.1
Unique NamemRNA_P-littoralis_Contig614.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig614.14.1 vs. uniprot
Match: D8LHA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA7_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 1.170e-97
Identity = 172/377 (45.62%), Postives = 235/377 (62.33%), Query Frame = 1 
Query:   19 PSVQIDWGTLCGATREQKVPVSLFVLCKAIVEDEGGALFLNATVVQRVQVGNVPIPNPPDPTSEESTAEHLKALMFDIGLKGPFPGGEVKIRRDAALSGVGARPDSTQLCAQTFDLVCVPIDVRSIWHWFPFRILQGTVELELQAKSTSFGQREEVFLYPTLCVSDPEQYPKNVVKTKPMGQIDRSRKLALLQPKPTIEMCETSYVYARWKKGAKDRHQ------------GNDPT---PDSDDLFITFPLMRLTFWLHEPTSKAVFKVLGPLLLVVIVMWVNSNEFYGIFDIWD-GCPEQDRDSEYLANGIGIAIAAFFMIPLIRAESRNSYHDSFTRNDYVALAFLVELGVSTLRNCFATFIGCLISSIVVIGAM 1101
            P V   W TL G+  E KVPV+LFVLCK +VED+ GAL+LNATVVQRV +     P PP    E       K L+F++ +KGP  GG +  RR  ++  V  R   T +  +T DL   P+DVR  W+WFPFRIL+ T++LELQAK+   G R +V   P LC S+ +    NV K +  G + RS KL  LQ +P + + +        ++  KD H+            G  PT   PD D+LF+T+PLMRLTF+L+EP +KA+FK++GPL LV+ +M +N NEFYG+ +IWD GCP ++RDS+YLANGIGIAI A F++P IRA+   S + SFTR+D +A+AFL+ L +ST   C     GC +S +VV+ A+
Sbjct:   17 PLVASKWATLRGSQLEAKVPVALFVLCKTVVEDDQGALYLNATVVQRVPLETTR-PMPPQDQLE-------KDLLFEMKVKGPSAGGGITSRR-RSVEDVRGRSQPTVMVCETLDLKTAPLDVRQHWNWFPFRILKATIDLELQAKNVDVG-RTKVLFCPDLCASNKKD---NVAKVQTRGSLSRSSKLTFLQEQPIVHIVQDRRFKKNLEQAVKDGHKQQAETYQADVEAGLPPTVADPD-DNLFVTYPLMRLTFYLYEPPAKAMFKIVGPLFLVMYLMLMNFNEFYGLRNIWDDGCPGEERDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDLMAVAFLIGLALSTSPYCHWAISGCFVSFLVVVSAV 379
[Close]
BLAST of mRNA_P-littoralis_Contig614.14.1 vs. uniprot
Match: D7FKB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB9_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 1.740e-82
Identity = 163/381 (42.78%), Postives = 226/381 (59.32%), Query Frame = 1 
Query:   25 VQIDWGTLCGATREQKVPVSLFVLCKAIVEDEGGALFLNATVVQRVQVGNVPIPNPPDPTSEESTAEHLKALMFDIGLKGPFPGGEVKIR-------RDAALSGVGARPDSTQLCAQTFDLVCVPIDVRSIWHWFPFRILQGTVELELQA--KSTSFGQREEVFLYPTLC--VSDPEQYPK------NVVKTKPMGQIDRSRKLALLQPKPTIEMCETSYVYARWKKGAKDRHQGNDPTPDSDDLFITFPLMRLTFWLHEPTSKAVFKVLGPLLLVVIVMWVNSNEFYGIFDIWDG--CPEQ---DRDSEYLANGIGIAIAAFFMIPLIRAESRNSYHDSFTRNDYVALAFLVELGVSTLRNCFATFIGCLISSIVVIGAM 1101
            V+ DW  L    ++  VP SLFV+CK +VED+GG LFLN T+VQRV V NVP  +  D T + +T   L++L+F I LKGP PGG++K R       R+ +     A P + QLCAQT DL+  P+DVR  W+ FP RIL+GT+ELELQ+  +   FG ++ + L P L   V D     K      N+++ KP   + R R+LA L+  P +E+C       R KKG +   + +D     ++L I +P + L FWL+EP SKAVFK+LGPL LV+ +M +N  EF+G         C EQ   D   +YLANGIGI +AAFF IP IR  +  S   SF R+D++A+AFL+ L +S  R C    +G L+S +VV+ A+
Sbjct:   31 VEADWEKLEQTEQDFIVPASLFVMCKTVVEDDGGGLFLNGTLVQRVLVKNVPTISFSDGTIDAATHSKLESLLFPIHLKGPLPGGDIKHRTLYIDDPREPSDQEAEA-PGTVQLCAQTLDLISAPLDVRQHWNTFPCRILEGTIELELQSSFRHEDFGSKK-ILLCPDLLRPVLDDLSGKKLQDRLENIIRIKPSSGLSRLRRLAFLREVPVVELC----YEIRLKKGVR---RADDEAGLDNNLLIRYPQLTLRFWLYEPISKAVFKILGPLALVLALMLMNFQEFFGFSAAVQSNDCLEQPASDTYRDYLANGIGIVLAAFFAIPSIREGNIKSPGISFKRDDFMAVAFLIGLALSNARQCRVALVGILLSCVVVVWAL 402
[Close]
BLAST of mRNA_P-littoralis_Contig614.14.1 vs. uniprot
Match: A0A6H5JJB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB2_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 7.780e-42
Identity = 101/272 (37.13%), Postives = 140/272 (51.47%), Query Frame = 1 
Query:  481 EVFLYPTLCVSDPEQYPKNVVKTKPMGQIDRSRKLALLQPKPTIEM----------------------CETSYVYA-----------------------RWKKGAK----DRHQGNDPT---------------PDSDDLFITFPLMRLTFWLHEPTSKAVFKVLGPLLLVVIVMWVNSNEFYGIFDIWD-GCPEQDRDSEYLANGIGIAIAAFFMIPLIRAESRNSYHDSFTRNDYVALAFLVELGVSTLRNCFATFIGCLISSIVVIGAM 1101
            +V   P LC S+      NV K +  G + RS KL  LQ +P + +                      C T   Y+                       R+KKG +    D H+    T               PD DD+F+T+PLMRLTF+L+EP +KA++K++GPL LV+ +M +N NEFYG+ +IWD GCP   RDS+YLANGIGIAI A F++P IRA+   S + SFTR+D  A+ FL+ L +ST   C     GC +S +VV+ A+
Sbjct:   30 KVLFCPDLCASNVTD---NVAKVQTRGSLSRSSKLTFLQEQPIVHVRNVQDTAPRISLHALLDKGITACGTFRCYSTPRLANIVGDVKRGIIAVDLNAQRFKKGLEQAVMDGHKQQAETYQADVEASRAPTVADPD-DDVFVTYPLMRLTFYLYEPPAKAMYKIVGPLFLVLYLMLMNFNEFYGLRNIWDDGCPRGKRDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDLTAVTFLLGLALSTSSYCHWAISGCFVSFLVVVSAV 297
[Close]
BLAST of mRNA_P-littoralis_Contig614.14.1 vs. uniprot
Match: A0A6H5JLS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.450e-5
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 1 
Query:   40 GTLCGATREQKVPVSLFVLCKAIVEDEGGALFLNATVVQRVQVGNVPIPNPPDPTSEESTAEHLKALMFDIGL-KGPFPGGEVKIRRDAALSGVGARPDSTQLCAQTFDLVCVPIDVRSIWHW 405
            G   G    Q+VPV L +L K + ED+ GA++LNATVVQ V +        P  T E+      + L+F++ + +GP  GGE+        S  G R     +  +T +L  +P+DV     W
Sbjct:    5 GRAAGTVAPQEVPVPLSLLWKTVGEDDQGAIYLNATVVQSVLLE-------PATTPEQLEKYRPQDLLFEMRVNEGPIAGGEIG---SGIKSVEGVR--GCVMVHETLELKNIPLDVCLQKSW 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig614.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHA7_ECTSI1.170e-9745.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKB9_ECTSI1.740e-8242.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JJB2_9PHAE7.780e-4237.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLS3_9PHAE5.450e-532.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig614contigP-littoralis_Contig614:57642..60371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1101
Hectar predicted targeting categoryother localisation
Exons5
Cds size1101
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791280.410026-CDS-P-littoralis_Contig614:57641..580451680791280.410026-CDS-P-littoralis_Contig614:57641..58045Pylaiella littoralis U1_48CDSP-littoralis_Contig614 57642..58045 +
1680791280.4265215-CDS-P-littoralis_Contig614:58343..585761680791280.4265215-CDS-P-littoralis_Contig614:58343..58576Pylaiella littoralis U1_48CDSP-littoralis_Contig614 58344..58576 +
1680791280.4363863-CDS-P-littoralis_Contig614:59260..594391680791280.4363863-CDS-P-littoralis_Contig614:59260..59439Pylaiella littoralis U1_48CDSP-littoralis_Contig614 59261..59439 +
1680791280.4520824-CDS-P-littoralis_Contig614:59632..597931680791280.4520824-CDS-P-littoralis_Contig614:59632..59793Pylaiella littoralis U1_48CDSP-littoralis_Contig614 59633..59793 +
1680791280.463425-CDS-P-littoralis_Contig614:60247..603711680791280.463425-CDS-P-littoralis_Contig614:60247..60371Pylaiella littoralis U1_48CDSP-littoralis_Contig614 60248..60371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig614.14.1prot_P-littoralis_Contig614.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig614 57642..60371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig614.14.1

>prot_P-littoralis_Contig614.14.1 ID=prot_P-littoralis_Contig614.14.1|Name=mRNA_P-littoralis_Contig614.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=367bp
MAEQEQPSVQIDWGTLCGATREQKVPVSLFVLCKAIVEDEGGALFLNATV
VQRVQVGNVPIPNPPDPTSEESTAEHLKALMFDIGLKGPFPGGEVKIRRD
AALSGVGARPDSTQLCAQTFDLVCVPIDVRSIWHWFPFRILQGTVELELQ
AKSTSFGQREEVFLYPTLCVSDPEQYPKNVVKTKPMGQIDRSRKLALLQP
KPTIEMCETSYVYARWKKGAKDRHQGNDPTPDSDDLFITFPLMRLTFWLH
EPTSKAVFKVLGPLLLVVIVMWVNSNEFYGIFDIWDGCPEQDRDSEYLAN
GIGIAIAAFFMIPLIRAESRNSYHDSFTRNDYVALAFLVELGVSTLRNCF
ATFIGCLISSIVVIGAM
back to top

mRNA from alignment at P-littoralis_Contig614:57642..60371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig614.14.1 ID=mRNA_P-littoralis_Contig614.14.1|Name=mRNA_P-littoralis_Contig614.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2730bp|location=Sequence derived from alignment at P-littoralis_Contig614:57642..60371+ (Pylaiella littoralis U1_48)
ATGGCTGAGCAGGAGCAGCCGAGCGTGCAGATTGACTGGGGTACTCTTTG
CGGGGCGACGCGCGAGCAAAAAGTCCCCGTTTCTCTGTTCGTTCTGTGCA
AGGCGATTGTTGAGGACGAGGGGGGCGCTCTCTTCCTGAACGCAACAGTG
GTTCAGAGGGTTCAGGTTGGAAACGTTCCAATACCGAATCCCCCAGACCC
GACATCAGAGGAGTCGACTGCCGAGCATTTGAAAGCGTTGATGTTCGACA
TCGGCCTCAAAGGCCCGTTTCCAGGCGGGGAAGTCAAAATTCGGAGAGAT
GCCGCCCTATCTGGAGTAGGAGCACGGCCCGATTCAACTCAGTTGTGTGC
GCAGACGTTCGACCTTGTCTGTGTCCCGATCGACGTCCGTTCAATATGGC
ACTGGTGAGCGATGATAAAGTGTTGTCCTCATGTTCGCGCGAGCGCAAGT
ATTTCGGCGTATTGATAGCGCCTCTGATCATTTTCAAATCGTTGCGGATC
GAGGATGTTGTAGTTTTCGGCTGGAATGTTCAAGTCGCTGCTCGAACTTG
TGGACTTTTTCTGCAGCAGAACGTACGCCATATTTACAGTCCCTTGTTTA
CCAGCAAGAGGCCCACGCAATGTCGAAACTTTTTTATCGGGATCGTTCTG
AACTCTTGTGCACTCTCTCGACCACACGTGTTTGTGGATCATCGTTCATC
AGGTTCCCGTTCCGCATTTTGCAAGGGACGGTGGAGCTGGAGCTGCAAGC
AAAGTCAACAAGCTTTGGACAAAGGGAGGAAGTTTTTTTGTACCCGACTC
TCTGCGTTAGCGACCCCGAACAGTACCCGAAGAACGTTGTGAAGACTAAG
CCCATGGGCCAAATTGATCGTTCTCGCAAGCTAGCTTTGCTGCAGCCAAA
GCCAACCATCGAGATGTGTGAAACATCGTATGTATGTTGGTTTTAGTAGT
GGTGTTCGAATACAGAATCAGGGTACAATTTTAACTTATACCGGCTTGCT
TGACTTATACCGGCTTGCTTGTTGTGGGTGGTGCTGACCTCAGATTATTG
TATCACAGTAATATTATGATGCAACACTAGGAATGATGTCCTATCCACGA
ATCCGTGACACTTGCGGTGGTTTCAAAAAAGCAACTAGTCGCAGCTGCCG
TGTTGCTTGCTTTCAGACAACGCTGCACAACTGTGGTTTCCAGTCACACT
ATTGCAAAAGCTTGTACTCCTACTGCTCAAGATTTGCACGTGAATTTTTT
GGCGCCCTAAATACTATGATGCGAACCTACCCGTTATATTCCTGCACACT
TAGCTGCTTGGAGCTTTCTATTGTCGTCGTGTGCCTTTGTGTGATTGCTG
ATTGGCTTGGAAACACAGCCTAAACGCCTATATTCCTACGAACGTCACGG
TTCTTCTCCGCACGCGTGCTGAGGAATTAGTCTGTACTGATGCGATTCGT
GATGGTTTATGGATCGTTAACATCAAGCTGCGGTGCAAACTACAACGACG
TGCTCGTTTGGCGGGACACGACGCCTTGCGTTGGGTGTATGATATTTCCA
ACGTATCGTCTCTTCCGAACAAATCGTTTTTGTTTGAAAATACATAATTA
TTATTGCAGATTTTGGAAGATGCGAGGTGGAAGAAGGGTGCGAAAGATCG
CCACCAAGGTAATGATCCTACTCCGGATTCGGATGACTTGTTCATCACGT
TTCCCCTGATGCGGCTGACTTTTTGGTTGCACGAGCCCACCAGCAAGGCC
GTCTTCAAGGTGCTTGGTCCTCTTCTCCTGGTGGTCATCGTGATGTGGGT
AAGGAAACTCTCTGCCAGTTTTGGTTGTGTGATCTCATCGGTCTTTATGC
CCAAGCGTGTGAAGCTCATTGGCGGCGCAAGTCACGAAGTCTGAGTTCAA
GGGCAGGCGACACTTTCAGTTACAACAGCAGAATGTTTTCTCCGCCGTTT
CAAAGTGCCCCATTCGATACCGCTGTCATACATTTGACCAGGTGAACTCC
AACGAGTTCTACGGAATCTTCGACATCTGGGACGGTTGCCCGGAGCAGGA
CCGCGACTCGGAGTACCTTGCCAACGGGATTGGCATAGCAATTGCCGCAT
TTTTCATGATCCCCTTGATTCGCGCGGAGTCCAGGAACTCGTACCATGAC
AGGTACGGTATGAACATTAAAAAAACTTTGCTATGGTGGCACCGTGTGTA
TCATTCTGTCTGGTAATATACATTCTTCAATCCCCTTCGTCCCTAACCCA
AAATGCAAATTCGTCATGTCTGTGTTGGTGTTTTTCATAACCACTTTGTC
TTTGCGGTGTTGCTCAGCGTGAAAGAATTTCAACCTGAAATGCTATATTC
CCACAGGCAAATTGGTAGAGTGAAGAATTATAAACAATATTCAAGTGTTT
TAGAAATATGGGCGGGGCAAGATTCCGCGGCTCGAACTCGCGTCCGAAAA
TTCGGCGTTTAGCGCGAGAAATTCCACTGGGCGTGATATAGGCTGATTAA
TCGTATCCTGTGGTAGTTTGAGCATGCGTATATTCGGCGTCGCCATATTG
TGATGTCACCACCAAAACACCACTTTCCCCGTCGCGACTTTATCCCGTGC
GTGCAGCTTTACTCGCAACGACTACGTTGCTTTGGCCTTCCTAGTGGAAC
TTGGGGTTTCTACCCTGCGGAACTGCTTTGCCACCTTCATTGGTTGTCTC
ATCAGTTCCATCGTAGTTATCGGTGCAATG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig614:57642..60371+

>mRNA_P-littoralis_Contig614.14.1 ID=mRNA_P-littoralis_Contig614.14.1|Name=mRNA_P-littoralis_Contig614.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1101bp|location=Sequence derived from alignment at P-littoralis_Contig614:57642..60371+ (Pylaiella littoralis U1_48)
ATGGCTGAGCAGGAGCAGCCGAGCGTGCAGATTGACTGGGGTACTCTTTG
CGGGGCGACGCGCGAGCAAAAAGTCCCCGTTTCTCTGTTCGTTCTGTGCA
AGGCGATTGTTGAGGACGAGGGGGGCGCTCTCTTCCTGAACGCAACAGTG
GTTCAGAGGGTTCAGGTTGGAAACGTTCCAATACCGAATCCCCCAGACCC
GACATCAGAGGAGTCGACTGCCGAGCATTTGAAAGCGTTGATGTTCGACA
TCGGCCTCAAAGGCCCGTTTCCAGGCGGGGAAGTCAAAATTCGGAGAGAT
GCCGCCCTATCTGGAGTAGGAGCACGGCCCGATTCAACTCAGTTGTGTGC
GCAGACGTTCGACCTTGTCTGTGTCCCGATCGACGTCCGTTCAATATGGC
ACTGGTTCCCGTTCCGCATTTTGCAAGGGACGGTGGAGCTGGAGCTGCAA
GCAAAGTCAACAAGCTTTGGACAAAGGGAGGAAGTTTTTTTGTACCCGAC
TCTCTGCGTTAGCGACCCCGAACAGTACCCGAAGAACGTTGTGAAGACTA
AGCCCATGGGCCAAATTGATCGTTCTCGCAAGCTAGCTTTGCTGCAGCCA
AAGCCAACCATCGAGATGTGTGAAACATCGTATGTATATGCGAGGTGGAA
GAAGGGTGCGAAAGATCGCCACCAAGGTAATGATCCTACTCCGGATTCGG
ATGACTTGTTCATCACGTTTCCCCTGATGCGGCTGACTTTTTGGTTGCAC
GAGCCCACCAGCAAGGCCGTCTTCAAGGTGCTTGGTCCTCTTCTCCTGGT
GGTCATCGTGATGTGGGTGAACTCCAACGAGTTCTACGGAATCTTCGACA
TCTGGGACGGTTGCCCGGAGCAGGACCGCGACTCGGAGTACCTTGCCAAC
GGGATTGGCATAGCAATTGCCGCATTTTTCATGATCCCCTTGATTCGCGC
GGAGTCCAGGAACTCGTACCATGACAGCTTTACTCGCAACGACTACGTTG
CTTTGGCCTTCCTAGTGGAACTTGGGGTTTCTACCCTGCGGAACTGCTTT
GCCACCTTCATTGGTTGTCTCATCAGTTCCATCGTAGTTATCGGTGCAAT
G
back to top