mRNA_P-littoralis_Contig116.60.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig116.60.2
Unique NamemRNA_P-littoralis_Contig116.60.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A6H5KZL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL7_9PHAE)

HSP 1 Score: 497 bits (1279), Expect = 1.380e-174
Identity = 262/323 (81.11%), Postives = 280/323 (86.69%), Query Frame = 1 
Query:   79 MRLNLVTKPPLLLAVVVGSSAFAPIPSGSRVSSIPSGSSCQPSPQRALPR--PLYA-KPTPPGPREGEREEDIPDDFGGSEPGFDFLARRRPGMQDRGGVRVRRRMDKSKTVPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYAGAMAISIPIGTTTFPNQLPEALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGGGLCDK 1038
            M L L     L LA++ GS AFAP           S SSC  SP+R LPR  P+ A    PP PREGEREED+P+D  G E GFDFL+RRRPGMQDRGGVRVRRRMDKS+TVPTDQQPFNELQELKEDPLFGWAQED KGL TRLAL YA AMA+SIPIGTTTFPNQLPEALL+AN+GGLGV+LAV IRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPA+DRLKA+LAAIGLGF+LTVVGFKVVVPDDPYAMLDDTYLN LKGDDD+ANDAA++AAARGTNRPVYCESRYYQAMAGGGLCDK
Sbjct:    1 MGLALANTSLLFLALITGSRAFAPS----------SSSSCH-SPRR-LPRTSPVGAVSAKPPRPREGEREEDLPEDLDGGEQGFDFLSRRRPGMQDRGGVRVRRRMDKSRTVPTDQQPFNELQELKEDPLFGWAQEDSKGLVTRLALIYAVAMAVSIPIGTTTFPNQLPEALLAANIGGLGVLLAVAIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAVDRLKAVLAAIGLGFMLTVVGFKVVVPDDPYAMLDDTYLNTLKGDDDIANDAAKKAAARGTNRPVYCESRYYQAMAGGGLCDK 311
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: D7FZ05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ05_ECTSI)

HSP 1 Score: 429 bits (1103), Expect = 4.080e-149
Identity = 210/227 (92.51%), Postives = 220/227 (96.92%), Query Frame = 1 
Query:  349 MQDRGGVRVRRRMDKSKTVPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYAGAMAISIPIGTTTFPNQLPEALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGGGL 1029
            MQDRGGVRVRRRMDKS+TVPTDQQPFNELQELKEDPLFGWAQED KGL TRLAL YA AMA+SIPIGTTTFPNQLPEALL+AN+GGLGV+LAV IRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPA+DRLKA+L AIGLGFILTVVGFKVVVPDDPYAMLDDTYLN LKGDDD+ANDAA++AAARGTNRPVYCESRYYQAMAGGGL
Sbjct:    1 MQDRGGVRVRRRMDKSRTVPTDQQPFNELQELKEDPLFGWAQEDSKGLVTRLALIYAVAMAVSIPIGTTTFPNQLPEALLAANIGGLGVLLAVAIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAVDRLKAVLGAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNTLKGDDDIANDAAKKAAARGTNRPVYCESRYYQAMAGGGL 227
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A836CC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC34_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.030e-72
Identity = 116/235 (49.36%), Postives = 157/235 (66.81%), Query Frame = 1 
Query:  343 PGMQD-RGGVRVRRRMDKSKTVPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYAGAMAISIPIGTTTFP--NQLPEALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTN-RPVYCESRYYQAMAGGGLCD 1035
            PG+QD +GG ++ RR    K VP DQQPFNELQ LKE P+FGWAQ+D+     RL   Y G   +S PI   TFP  +Q  + +L+ N+G LG+V A+ +RLY+GW+YV+ RL  +VV YE+SGWYDGS + KPPD++ARD+ML+ YE +P + RL+  LA +   F+ T+V ++V+VP DPY M  D YL  L  ++  A + A  + A G   RP YC SRYY+A+AGG  CD
Sbjct:    5 PGLQDVQGGPKILRRARGGKKVPLDQQPFNELQNLKEAPMFGWAQKDLNSFLLRLGGVYTGGALVSFPIARVTFPGDDQFAQLVLATNIGALGLVTALTLRLYAGWDYVAQRLDEDVVAYEQSGWYDGSTYAKPPDVQARDQMLSIYEARPVLKRLRVTLAVLASLFVTTIVAYRVLVPTDPYEMYGDAYLKDLPANEWKAKETAEASKAAGAKARPAYCGSRYYKALAGGNGCD 239
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A6U1LWA6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LWA6_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.010e-59
Identity = 115/265 (43.40%), Postives = 167/265 (63.02%), Query Frame = 1 
Query:  250 PPGPREGEREEDIPDDFGGSEPGFDFLARRRPGMQDRGGVRVRRRMDKSKTVPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYA-GAMAISIPIGTTTFP--NQLPEALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGGGLCD 1035
            PP PR+ + +ED  DDF G+           PG+QD     + R  DK+ TVP DQQPFNEL  LK+ P FGWAQ+D+K L  RL + YA   + +S PI   T+P  +QL E L +AN+G + VV  +V+RLY GW Y+  +LG+EVVEYEE+GWYDG++W KP +++ RD+ +  YEV+P ++R++ I+   G+  +L+V+ FK++   D Y   D   L  L+ D++    AA + AA+   +P YC SRYY+ +AGG  C+
Sbjct:   57 PPLPRDDDGDED--DDFFGA-----------PGLQDPDAKPMYRMGDKTNTVPLDQQPFNELTNLKKAPFFGWAQKDLKFLLGRLGMVYALFFITLSYPISYATYPYGDQLLERLAAANLGNIIVVAVLVLRLYVGWAYIYDKLGSEVVEYEETGWYDGAQWVKPANVKTRDQFIATYEVKPVVERMEKIVGVFGVLVLLSVLAFKLLSVGD-YDPYDPKILQTLQMDEN----AAIKDAAQNRGKPTYCGSRYYKTVAGGNNCE 303
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A7S2F0W8_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F0W8_9STRA)

HSP 1 Score: 184 bits (468), Expect = 7.180e-52
Identity = 94/214 (43.93%), Postives = 136/214 (63.55%), Query Frame = 1 
Query:  400 TVPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYAGAMAI-SIPIGTTTFP--NQLPEALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGGGLC 1032
            +VP  QQP  EL++LK  P FGWAQ +     T+++  Y  +    S+ I   T+    Q  +ALL+ANVG + +   +++RLY GW+YV  RL  +V  YEESGWYDG    KP D+RARDE+L  +EV+P + R+    A +G+ FI +++ FK+  P DPY   + +YL+ L+GDD  A   A++A AR +N+P YC+SRYY+A+AGG  C
Sbjct:  113 SVPEGQQPAQELEDLKAAPFFGWAQLEDGEFLTKVSYLYGASFIFPSLAIAAITYELDRQPLQALLAANVGSMALTFVILVRLYVGWSYVGDRLEKDVGYYEESGWYDGFLSVKPKDVRARDELLFKFEVEPVLARVTKFTALVGVAFIASILAFKLAAPLDPYGQFESSYLDNLRGDDAAAMREAQEAGAR-SNKPTYCDSRYYKAVAGGNGC 325
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A7S1TYX4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYX4_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.890e-44
Identity = 89/219 (40.64%), Postives = 131/219 (59.82%), Query Frame = 1 
Query:  388 DKSKTVPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYAGA-MAISIPIGTTTFPNQLPE--ALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGGGLCD 1035
            ++ +    +Q P  EL++L++ PLF WAQ D      R+ L YAGA +   +PI   T+P +     A L+ + G   +VL +++RL  GW+Y+  RL ++V++YEE+GWYDG    K  D+  RD++L++ EV P + RL     A G  F+ + +  KV  P DPYAM D  YL  L  DDD A +A R AA+RG  RP+YC+SRYY+ +AG   C+
Sbjct:  103 ERQRAAMIEQGPAAELKDLQKAPLFSWAQLDDVPFLQRMGLVYAGAFVGAGLPIALVTYPREDERLVAFLAGSAGATFLVLMLIVRLAVGWSYIKDRLESDVLDYEETGWYDGFRSTKSKDVANRDKLLSSLEVVPVLTRLTKAGVAFGGLFLASCLLLKVAAPTDPYAMFDPEYLETLSRDDDAAAEAQRAAASRG--RPLYCDSRYYRTVAGASNCN 319
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A6S9UH15_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9UH15_CHRCT)

HSP 1 Score: 161 bits (407), Expect = 3.360e-43
Identity = 92/219 (42.01%), Postives = 135/219 (61.64%), Query Frame = 1 
Query:  403 VPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYAG-AMAISIPIGTTTFPNQ--LPEALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRA--RDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGG---GLCD 1035
            VPT+QQP  E++ L+E+P F WA+   + L  RLA  Y+  A+ IS+PI  TTF     LP+ALL+ +VGG GVVLA ++RL +GW YVS+RL      YEE+G      +    D  A  RD +L++YEVQP + ++  + A +G    L  +  + + PDDPY    + YL++L+ DD +A    ++A ++   +P YC+SRYY+A+AGG   GLCD
Sbjct:   79 VPTEQQPVVEMRNLREEPFFDWAELPDEQLVQRLAALYSFFAIVISLPIALTTFATAETLPQALLATHVGGSGVVLAFLLRLRTGWGYVSMRLRDRQTYYEENGASGRGGYLAEKDAEATMRDRLLDDYEVQPVLRKVDRLSAVVGGSLGLAAIALRTLTPDDPYKQFSNDYLSQLQMDDKLAAKEQQRAQSQSL-KPSYCDSRYYKAIAGGEKSGLCD 296
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A7S2C3X8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3X8_9STRA)

HSP 1 Score: 156 bits (394), Expect = 8.460e-42
Identity = 88/214 (41.12%), Postives = 127/214 (59.35%), Query Frame = 1 
Query:  403 VPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYAGAMAI--SIPIGTTTFPN-QLP-EALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGGGLC 1032
            VP  QQP  EL++LKE P F  A  +    A ++ + Y GA+ +  S+PI   T+P  + P +A+LSAN+G   V    +IRLY GW+YV  RL  +V  YEESGWYDG    KPP++  RD++L  +EV+PA+DR+   +         ++  F V  P DPY  L + YL +++ DD  A    R++A+    +P YC+SRYY+A+AGG  C
Sbjct:   43 VPESQQPAQELEDLKEAPFFSMAALEDADFAKKIGIVY-GALFVFPSLPISLITYPLFEAPIQAILSANLGATVVTFLFLIRLYVGWSYVGDRLEKDVGYYEESGWYDGFLAVKPPEVAQRDQLLYQFEVKPALDRVIKFMLLGTASVAASIALFNVAAPSDPYDYLSEDYLQRVRQDDGAAMMETRRSAS---GKPTYCDSRYYKAVAGGNGC 252
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A7S2NRE5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NRE5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.790e-41
Identity = 91/214 (42.52%), Postives = 121/214 (56.54%), Query Frame = 1 
Query:  403 VPTDQQPFNELQELKEDPLFGWAQEDI--KGLATRLALTYAGAMA-ISIPIGTTTF--PNQLPEALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDP-YAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGGG 1026
            +P DQ+P  E   +++ PLF WA E+    GL  RL LTY    A +  PI   TF  P+   + L +ANVG L  +L +++RLYSGW Y+  RL ++VVE+EE+GWYDG   YK  +  ARD  L   EVQP   R+K +    G   +L  VGF   +   P +   D   L  L+ DD +A  A +QA   G  RP YCESRYY+A+A GG
Sbjct:   84 IPEDQRPATEYFNMRQQPLFNWASEETGTNGLIARLGLTYVALFALVCYPIAGATFILPDYEIQKLTAANVGDLAFLLVLLVRLYSGWGYIGARLQSKVVEFEETGWYDGDFEYKTKEETARDLFLYRSEVQPVEQRIKLVTLVTGALLVLGCVGFNASLKAKPMFNEYDPELLKVLQADDKLAGVAQKQAQLSG--RPTYCESRYYRAVANGG 295
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BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Match: A0A7S2A6D1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6D1_TRICV)

HSP 1 Score: 154 bits (390), Expect = 1.140e-40
Identity = 93/217 (42.86%), Postives = 127/217 (58.53%), Query Frame = 1 
Query:  394 SKTVPTDQQPFNELQELKEDPLFGWAQED--IKGLATRLALTYAG-AMAISIPIGTTTFPNQLPEA--LLSANVGGLGVVLAVVIRLYSGWNYVSLRLGAEVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGLGFILTVVGFKVVVPDDP-YAMLDDTYLNKLKGDDDVANDAARQAAARGTNRPVYCESRYYQAMAGGG 1026
            ++ VP +Q+P NE  +L   PLFGWA E    KGLA RL   YA   + I  PI   T+     E   L +AN G + VVL ++IRLYSGW YV  RL ++V+EYEESGWYDG   +K    +ARD  L   +V+P  DRLK   AA+   +I ++VG  V    +P +   D   L  L+ D+ +AN    +AA + + RP YC++RYY+A+A GG
Sbjct:   84 AEAVPEEQRPANEYLDLIRQPLFGWADETRGTKGLAIRLGAVYAAFGVLICYPIAGATYTQSGYELNKLAAANFGAVSVVLVLLIRLYSGWGYVGSRLKSKVIEYEESGWYDGDIEFKTEAEKARDLFLYRQDVRPVEDRLKGFSAAVAALWIASIVGLNVASSVNPIFNEYDPDMLKTLQYDEKMAN----KAAEKSSGRPTYCDNRYYRAVANGG 296
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig116.60.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZL7_9PHAE1.380e-17481.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ05_ECTSI4.080e-14992.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC34_9STRA2.030e-7249.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1LWA6_9STRA4.010e-5943.40Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2F0W8_9STRA7.180e-5243.93Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1TYX4_9STRA2.890e-4440.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6S9UH15_CHRCT3.360e-4342.01Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2C3X8_9STRA8.460e-4241.12Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2NRE5_9STRA5.790e-4142.52Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2A6D1_TRICV1.140e-4042.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig116contigP-littoralis_Contig116:228737..235385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZ05
Preferred nameCGLD27
PFAMsDUF1230
Model size1127
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
GOsGO:0006950,GO:0008150,GO:0009605,GO:0009991,GO:0031667,GO:0042594,GO:0050896,GO:1990641
Exons8
Evalue6.08e-151
EggNOG OGs28JNY@1|root,2QS25@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family Ycf36
Ec32 orthologEc-06_002060.1
DescriptionProtein of unknown function (DUF1230)
Cds size963
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig116.60.2prot_P-littoralis_Contig116.60.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig116 228815..235299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789479.771753-UTR-P-littoralis_Contig116:228736..2288141680789479.771753-UTR-P-littoralis_Contig116:228736..228814Pylaiella littoralis U1_48UTRP-littoralis_Contig116 228737..228814 +
1680789479.8747418-UTR-P-littoralis_Contig116:235299..2353851680789479.8747418-UTR-P-littoralis_Contig116:235299..235385Pylaiella littoralis U1_48UTRP-littoralis_Contig116 235300..235385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789479.78667-CDS-P-littoralis_Contig116:228814..2290371680789479.78667-CDS-P-littoralis_Contig116:228814..229037Pylaiella littoralis U1_48CDSP-littoralis_Contig116 228815..229037 +
1680789479.7953348-CDS-P-littoralis_Contig116:230447..2306321680789479.7953348-CDS-P-littoralis_Contig116:230447..230632Pylaiella littoralis U1_48CDSP-littoralis_Contig116 230448..230632 +
1680789479.8055782-CDS-P-littoralis_Contig116:232060..2321101680789479.8055782-CDS-P-littoralis_Contig116:232060..232110Pylaiella littoralis U1_48CDSP-littoralis_Contig116 232061..232110 +
1680789479.8170085-CDS-P-littoralis_Contig116:232711..2327971680789479.8170085-CDS-P-littoralis_Contig116:232711..232797Pylaiella littoralis U1_48CDSP-littoralis_Contig116 232712..232797 +
1680789479.8269327-CDS-P-littoralis_Contig116:233495..2335761680789479.8269327-CDS-P-littoralis_Contig116:233495..233576Pylaiella littoralis U1_48CDSP-littoralis_Contig116 233496..233576 +
1680789479.837139-CDS-P-littoralis_Contig116:233911..2340141680789479.837139-CDS-P-littoralis_Contig116:233911..234014Pylaiella littoralis U1_48CDSP-littoralis_Contig116 233912..234014 +
1680789479.844873-CDS-P-littoralis_Contig116:234545..2346931680789479.844873-CDS-P-littoralis_Contig116:234545..234693Pylaiella littoralis U1_48CDSP-littoralis_Contig116 234546..234693 +
1680789479.860629-CDS-P-littoralis_Contig116:235212..2352991680789479.860629-CDS-P-littoralis_Contig116:235212..235299Pylaiella littoralis U1_48CDSP-littoralis_Contig116 235213..235299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig116.60.2

>prot_P-littoralis_Contig116.60.2 ID=prot_P-littoralis_Contig116.60.2|Name=mRNA_P-littoralis_Contig116.60.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=321bp
MRLNLVTKPPLLLAVVVGSSAFAPIPSGSRVSSIPSGSSCQPSPQRALPR
PLYAKPTPPGPREGEREEDIPDDFGGSEPGFDFLARRRPGMQDRGGVRVR
RRMDKSKTVPTDQQPFNELQELKEDPLFGWAQEDIKGLATRLALTYAGAM
AISIPIGTTTFPNQLPEALLSANVGGLGVVLAVVIRLYSGWNYVSLRLGA
EVVEYEESGWYDGSEWYKPPDIRARDEMLNNYEVQPAIDRLKAILAAIGL
GFILTVVGFKVVVPDDPYAMLDDTYLNKLKGDDDVANDAARQAAARGTNR
PVYCESRYYQAMAGGGLCDK*
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mRNA from alignment at P-littoralis_Contig116:228737..235385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig116.60.2 ID=mRNA_P-littoralis_Contig116.60.2|Name=mRNA_P-littoralis_Contig116.60.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6649bp|location=Sequence derived from alignment at P-littoralis_Contig116:228737..235385+ (Pylaiella littoralis U1_48)
GCGAAACGCGGGTTCGACGTGTACTCAGCCCCCGTGGCCTACCAACAGCA
CCGTTTGACCGTGCAAGTAATCTTTGATATGAGGTTAAACTTGGTCACTA
AGCCACCTCTACTGCTCGCAGTAGTCGTGGGTTCGAGTGCTTTCGCCCCG
ATACCGTCAGGTTCGAGAGTGTCATCGATACCATCAGGATCATCATGTCA
ACCATCTCCGCAACGAGCATTACCGCGTCCTCTCTACGCAAAGCCAACTC
CTCCTGGTCCGCGAGAGGGCGAGAGGGAAGAAGATATCCCGGATGATTTT
GGTGAGATACAGCAGCGTGTACAGAGAATTCTTGTGCCATCCTGTCGCAC
GGCCGTCCTACAAAATGATGCTACTCCCTGCTGCTGTGTCGACGCAGAAG
GTGCAGTTCTGGTTGTTTCTGATTCAAATACGAGTACAAATTCAACACCA
ATTATACGTCGAAGTACCAGGTATCAGCCATGATAGTCCTGAATAGAGCT
GCCTGAGTACAGGAAATAGTGGTGCCAAAGCGGCTTCGAAGGGGCAGTGC
TGTACACGCCGTAGTAAACCCGAATGAAAAGTCTTGTATCCGGTCTTCAG
CATGGCGTGGTCTCTCTTCATCCTACGGAAATGTACGAGTATCATGTACG
AAGTAATATCTTTCGCATTTCCTGCAGTGGCAGAGCTTCTTACCCCCACA
AGAGGCGTTGAATTTCGCTTGAGTACCTTGTTAAAAAGGAGAAAATCCCA
AACTCCTGCGATAGCGAAAGCATGATGACTTTTTCATCCCCCACCAAATT
CTGCAGGAACTTTCTGTTTGGCCCCGAAGTGCTGATGGAATGGTTACCAA
GTTGGCGCACAGCAGAAAACAGAAATAAATATGGAAAAAAGAAGAAAAAA
AAAACGAGCGGGCGCGCGAACGTTTCAAAGCGTGCATCCTTATCCTTCCC
GTCACGGCTGTCAACCATAGGTCATCACCACCGCCGTTGCCAACCGTGGA
ACTCGACGATCATTGTCGTCGTTAGTAAAATAAAGTGACCTTTGACATTC
GCTTTCTGCTCGAGAAGCACAGGAGGTACGTGGTTGATGGGCCTGCCCGT
GTTACGGGCACAAGCCCTTCCGGTTGTTCATACGAACGAATGATACAAGG
ATTACTTTTTGGGAGCTTCCACCACTTGCCGACAAGGTAGTGGTTTAAGC
CGAACGATGTGCAGATGGAGCAGGAGCGGTCGATGGTCAGCCTCATTTGT
TTGACACTGGTTGCTTTTTGATGTTTCGGCAGCAGCTCCACAACTGTGAT
ACTGCCGTGTCGGCGCATCCTTCTGGCCCTCCGCACGACCCACACATCAT
TTCTACCCCTTGGTGCGACATCAAGAGCATGCGGTACCGCTGCCTGCCTC
GTCCGATGCCTGCTACATAGTGCCCACAGACCGACAGCGAGTACCCATCT
CCCCCTCCAAACCCGATGTCATTTCACTGGCAAAATAATCAACCCAGGAA
GGCGGCAGCTACAGCAGAGGGTATTTTTACTCCAGCAGCACGATACCTGC
GCCTGGATTCTTGGGTGACCTCGACCTATCACGAAAGAGGTTTCTTGACG
AAAGAGGTTCCTTTCGTTTTCAAGCCCTTTTTTTTCAAGGAGTTGGGTCT
GCCGTTGTTGTCTCTCCCCCCTTCCCCCCCCCCTGTTTTTTCTTTCTCCT
ATTTTGTGGAGGTGGAAGCGAACCGGGATTTGACTTTCTCGCGCGAAGGC
GCCCCGGCATGCAGGATCGTGGGGGGGTGCGCGTGCGACGTCGCATGGAT
AAATCCAAAACCGTCCCTACAGACCAGCAGCCCTTCAACGAGCTGCAGGA
GCTCAAGGAGGACCCCCTTTTCGGATGGGCCCAGGAGGATATTAAGGTAA
CTTCGCCGCTGTACCGCCGTAGAAAGCCGCACTGCTTGATGCGTGTACAG
CTTCTTGACACCTGTGGCGCTGTGCAGCATCGTCGAGATATGTCAAGTTT
TTCTCGCCCCCTCTTATCTGGGCCATAGCTTACTCCACACGTTTGTATCA
GTACTCTGGTTTTTAAGCTTTCGAAACTACGGACGGTTTGACGAACGACA
GCCCGACAAACATTGAAATCGCAACCGCCACCGTGGACAACGGCCGCGAC
GGAGAAGAGTGATGTTCCCCGTGGTATTATACACGGGGGTGGTAAAGGGG
GCTGCGAGGTTTTTGACCTCACCTGGAAAAAGGATGAGAGGGAGGGAAGC
TCGAAACGAGGGGGGAACACAGTCAGGGGATAATCCATTGTCATCAAGGA
GATAATTACGGAGAAGGGGGAGGGGGAATCTCGGGAAAGCAAGTGCATGA
AGATTCAGATCTGTGTGACGACCGCGGCGGAAAAGATCAAGAGGGAAGAG
ACGGAACGCGAATCGCTCACTCTTCACGTAAATTCCCCCTTTTCGCGGCG
CCTCTTCTGCTCCCGCGTTCCAGTGTATCTACAGCAGTTCTTCTTTTACG
TTCTGCAATTTGAGCTATCATGATTTTTTTCCGTTTCTTTTCTGATTTTT
GAGTTAAAGTTTTTATTTACCTTGCTCGCTGAGTCCACGGAAGTTGTAAC
GGTTCCCTCGATGTCTGATTCCGGCACTTGGCTCTTAGTTTTGTTCGGGG
CCTCACTTTTTCTCCTATTTTTTCATTTCATTTTATTTTATTTTTGTATC
GTTGTGATCCTTCGGGGTACGTTTCGTTTTTCGAATTTTCTTCCTCTTTT
ATCGGGTTGATACCACACATTACTTTCGGGGGTAAAGCCGCCTGCGCCCA
CGGAAAGCGTTCCCTATCCGATAAACGGACAGTGGTGAGGTACTGGGCGA
TCGGAACTTTTTTTGATGTTTTCAAGGTCAAGACGAAACGTACACCCACG
ATACGATCAACAGCATTAATTTATATTAGCACGCGAATGCAACGTAAGGC
AAGGGCAGAGCGGCAACTCGTTTGCTGTTTCAAGATAAATTTTTCGAAGC
AGTTGGCGTACACCTATGCCGGTTCCGCGTGAAGGTAACACTGGCAGGAA
TGCTGTGGAAGACCACCGACACTGCGCCGTCGTTTCTTTGCAAATCGTGT
GCTCATGTTCTCTGTATAGGGCCGCTGTACAGCACTACTGAAAACATCCG
TATCAGTGTCTGGAACGAGTGTTTGTAGGCGGTGGTTTCGCAGGCTGGTC
GCACGGAGAGTTTTGTACTTGTGTCCATGTGTGGGACCGCTGTCTAACCT
CAAAACTCTTTTCATTATTGTTCCTCGCGAACATGTCCCTCGTCCGTTTT
ATTCCAACGGTTGATATCTGACAGGGTCTGGCCACCCGGCTAGCACTGAC
GTACGCGGGGGCAATGGCTATCAGGTGGGTCGGCTCTGCCGTAAGCGGGC
GTGTTACCGGGAAATCGCCCAACCTGGACGCACTTGCCGTGTGTACGATG
TATGGGCATGTTCGTCGCGCCTTTCGGGTGACATCTCAGCGCTTCTGATG
TTTAGTTTCCAACGATTAAGAAAAATGAGGTTTCTTCCTTATTTTGTATT
CGCTTTTTGTAATTATTATTTTTTCGGTGCTTGTCAAGGCTCTGGATACT
CATGACTGTACCTGACCGTGCGATCAAAGGCGAAAGAAGCCGCCCCCGAC
TACACACACATAACACAAATACACAGAATTGCCCACAGCAGCGGTGTGCG
TGCGTGCGTTCGCGTGTTTCTGTCGACACGAAAACATGAGGCAGCCGAAA
TTCGGGTTCTGCGGTCACCAGCATGCTGAAAATAAGTCGCTCGCGGTACG
AGTACCCGGCGCGGCCCGTGGACACAGATCTTATATACAGAAAGCACAAC
CCCAACCCCTCGCGTGAGCTTTACAATCAAAGACCTTATGCACAAAAAAC
ATCCCATGCATAACCCAAACCCCTCGCGCGCTCTTTGCAATTGCCGTGCC
CCCCGTCGCTGTCCCCCTGTTCCAGCATTCCGATCGGCACCACGACGTTC
CCAAATCAGCTGCCCGAGGCGCTGCTGTCAGCGAACGTTGGAGGCTTGGG
AGTTGTCTTAGGTGAGAACTCGCGCATGGAGGAGGGGAGCAAGAAACTCA
GTGGTGTGGGTGCCGTGACACGGAACTGACCCGTCGCACTACTTTCTCTA
ATAGCGTACGCGGAATATCGAGGACACACGTATTCATTCCTCGTCGTATG
GTACTCATCGGTCACACCCAGGCATTCCACCCTGTGCCTATCCAAGATCG
CACACCCTTTTGTATTTTTTCCGACCTTTGCCAGGCAGTGAGATACAGCA
GCTAGTTTCTATCCCGCGAATTCACACACGTTTTCCTGGGCATGGATGAC
ATCTTCGCCGATGGGCTTTGTGGAGAAGAAGGCAGGCTCGCCTCTCGCCC
CCCCCCCCCCCCTGCCCTGCCTCCACGCGTATTGCGGCAACCCCCTGAAA
AGCGCTCGACAGTTCGAACTTTTTTGCACTGTTTCCCACCGCAAAGGGGT
GCGCCGACATCGATTTCCTTAGAGCGTACAATAACGGCGCACGCCCCCCC
CCCCACCCCCCGCTCCTTCGCTTGCGTACACGTGGTTGGTCGCGTGTCCC
GAGGCCACCGCGACCGCAGAACGCTTTGGTTGTGTCCATACACGAATAAC
CGGGGTGCGATTAGTCCTCTCTAAGACTAACTTCTCCCCCTCCTCCTTGG
CCTCCTTATGTCGATGACTGTGTCCGTCGATCGATGGTCCGATCAAAAAT
ACGGAACAGCGGTGGTGATTCGGCTGTACAGCGGTTGGAACTACGTGTCT
CTTCGCCTTGGAGCGGAAGTGGTGGAATACGAGGAGTCAGGTACAGCAGT
AATTTTGGTTTCGAACGGTGCACCGTCAAGCACATACTGCTGCGGTATAT
GCTCGTGATATATCATGCAGGTCCCATATCAAACTGCTATCACAGGTTGC
TTTTCCCGCCTATAAGGGTCTTGCTGGTTGGAAAGCAAGCGTTTTTCGTT
CAACGGTTTTGCGTTTTCTCCAACGTGTCGTGTCGACGCTTGGTGACTTC
ATTCGGACCCCGCCGTCCCCCCCCATGTTGAGAGTGTTAGTCGCATGCGT
CCACCACCATCTCGCCTCTCCTTCGGCAGCAATGCATCGAGAACTCGGTC
CCACCTCTCATTGTTGTCTCTCCAGGTTGGTATGACGGGAGCGAGTGGTA
CAAGCCTCCGGATATTCGCGCCAGAGATGAGATGCTGAACAACTACGAAG
TACAGCCGGCGATCGATCGTCTCAAAGCGTGAGTGGAAAGCGAGTCTACC
AAAATGTACAAAGTTCACGCTTTCTTCCCGGCTGCTGAAACACGTCTGTT
GCGCGGCCGAGGAAGCACCCTGCGCGTTCCGTTGCGGATTTCGAGGGGCG
CATCCCCCTGTGATGTCCGCACGCACGTATCGAATTTATGGATCGCGTGT
GACATCCCTGCGGTCATGTACGTCGGCAGGACCGCCTAAGCTGCCGCATG
CGTCGCAGAGACTACCCCTCGTCGAGACAAATAGGAGTGCTCTGTTTTTG
GCATTTACTCGTTGGGTCCGGCACGGCAGGAGTTGCACGAGACGCACAAA
AATGCGAAATGAAAATCCAAATTTGTGTTCATGGATACTACCACGATACA
GTGCCCGTGATGCTGTTGTTTTGTCTCCTCCTACCATCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTGTTCGCTAATCTGGTTTCGTGTTTGGTGTTG
TTTTAATTTTTTGTGTCTTGTGTACTGCTGCGGCGACGCGACGGCGGTGG
GGGGAGCAGGATCCTTGCCGCGATCGGGCTCGGTTTCATTCTAACCGTGG
TTGGATTCAAAGTGGTGGTGCCGGATGACCCTTACGCGATGCTGGACGAC
ACGTACCTCAACAAGCTTAAGGGCGACGATGACGTTGCGAACGACGCGGC
CAGACAGGTACGCCGTCTTTGTTTCACAGGTCATGATACTTCTCCAAGGT
TCCAGTGCTTGATGTTCATGTTTGCATGCATTTCCTCACGCTTCTGTCGA
ATGTGTTCATCACATCTGCCATCATTCTTCATTACTCTGGAGGACAAAAA
TATTCTTCAGCGCACAAGAGGCCCGGGAAAAGTGTGTCTGTACTCCCTTC
AGCGGTCGCCCGGAAGGTGTTTCAGAGCAAGACGTGAACTTGAGCGACAA
AAATGATACGGGTGCTTGTATCTGACGTCACACTTCGTACCTGAATATGC
CCACGACGGACACGATCTTGTCGTCCGAAATGCTGACACCTGACGTGCGA
TGAACTCAGACGTGGCAGCCTACACCCCCACTTGCGTGACGATCCGGCTC
CGCCTCACCGCGCATCTACCACAGGTGCTACCTCTTGTCATCGGGTACCA
TTTTTCACCGATTAATCACCACCGCTTCTACTAAAACCCCGTTTCATCAC
CTGCACACTGTTTTTGTTTTTCCTAGGCGGCGGCAAGGGGTACGAACCGA
CCAGTCTACTGCGAATCGCGATACTACCAGGCCATGGCAGGAGGCGGTCT
CTGCGACAAGTAACCATTGGTCTCATGGGGCCTGACACTCGAACACCAAG
GACACACCATGAGCCAAATACGCTTGGTGGAGATATTGACGAGAGGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig116:228737..235385+

>mRNA_P-littoralis_Contig116.60.2 ID=mRNA_P-littoralis_Contig116.60.2|Name=mRNA_P-littoralis_Contig116.60.2|organism=Pylaiella littoralis U1_48|type=CDS|length=963bp|location=Sequence derived from alignment at P-littoralis_Contig116:228737..235385+ (Pylaiella littoralis U1_48)
ATGAGGTTAAACTTGGTCACTAAGCCACCTCTACTGCTCGCAGTAGTCGT
GGGTTCGAGTGCTTTCGCCCCGATACCGTCAGGTTCGAGAGTGTCATCGA
TACCATCAGGATCATCATGTCAACCATCTCCGCAACGAGCATTACCGCGT
CCTCTCTACGCAAAGCCAACTCCTCCTGGTCCGCGAGAGGGCGAGAGGGA
AGAAGATATCCCGGATGATTTTGGTGGAAGCGAACCGGGATTTGACTTTC
TCGCGCGAAGGCGCCCCGGCATGCAGGATCGTGGGGGGGTGCGCGTGCGA
CGTCGCATGGATAAATCCAAAACCGTCCCTACAGACCAGCAGCCCTTCAA
CGAGCTGCAGGAGCTCAAGGAGGACCCCCTTTTCGGATGGGCCCAGGAGG
ATATTAAGGGTCTGGCCACCCGGCTAGCACTGACGTACGCGGGGGCAATG
GCTATCAGCATTCCGATCGGCACCACGACGTTCCCAAATCAGCTGCCCGA
GGCGCTGCTGTCAGCGAACGTTGGAGGCTTGGGAGTTGTCTTAGCGGTGG
TGATTCGGCTGTACAGCGGTTGGAACTACGTGTCTCTTCGCCTTGGAGCG
GAAGTGGTGGAATACGAGGAGTCAGGTTGGTATGACGGGAGCGAGTGGTA
CAAGCCTCCGGATATTCGCGCCAGAGATGAGATGCTGAACAACTACGAAG
TACAGCCGGCGATCGATCGTCTCAAAGCGATCCTTGCCGCGATCGGGCTC
GGTTTCATTCTAACCGTGGTTGGATTCAAAGTGGTGGTGCCGGATGACCC
TTACGCGATGCTGGACGACACGTACCTCAACAAGCTTAAGGGCGACGATG
ACGTTGCGAACGACGCGGCCAGACAGGCGGCGGCAAGGGGTACGAACCGA
CCAGTCTACTGCGAATCGCGATACTACCAGGCCATGGCAGGAGGCGGTCT
CTGCGACAAGTAA
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