mRNA_P-littoralis_Contig614.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig614.31.1
Unique NamemRNA_P-littoralis_Contig614.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig614.31.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.950e-5
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   22 RWEYLVGRWVPLQMARSGDVVGVKRWV 102
            RWEYLVGRW+PLQMARSGDV+GV+ ++
Sbjct:  325 RWEYLVGRWIPLQMARSGDVLGVRSFL 351
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BLAST of mRNA_P-littoralis_Contig614.31.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 6.650e-5
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   22 RWEYLVGRWVPLQMARSGDVVGVKRWV 102
            RWEYLVGRW+PLQMARSGDV GV+ ++
Sbjct:  276 RWEYLVGRWIPLQMARSGDVHGVRSFL 302
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig614.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIX0_ECTSI1.950e-577.78Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5K0W6_9PHAE6.650e-577.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig614contigP-littoralis_Contig614:124246..124718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size473
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791279.6261523-UTR-P-littoralis_Contig614:124245..1243051680791279.6261523-UTR-P-littoralis_Contig614:124245..124305Pylaiella littoralis U1_48UTRP-littoralis_Contig614 124246..124305 +
1680791279.6494155-UTR-P-littoralis_Contig614:124650..1247181680791279.6494155-UTR-P-littoralis_Contig614:124650..124718Pylaiella littoralis U1_48UTRP-littoralis_Contig614 124651..124718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791279.6392145-CDS-P-littoralis_Contig614:124305..1246501680791279.6392145-CDS-P-littoralis_Contig614:124305..124650Pylaiella littoralis U1_48CDSP-littoralis_Contig614 124306..124650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig614.31.1prot_P-littoralis_Contig614.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig614 124306..124650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig614.31.1

>prot_P-littoralis_Contig614.31.1 ID=prot_P-littoralis_Contig614.31.1|Name=mRNA_P-littoralis_Contig614.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MARSGDVVGVKRWVTACNGARSPALRTPRCIILGVYKYCCVATVGFRVSV
AYCVAFVGEFLAGSKKHKRHQKCPRTTRVLNVHALCMCMLFCSRCNRFVL
RVACCCCMLLLLLL*
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mRNA from alignment at P-littoralis_Contig614:124246..124718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig614.31.1 ID=mRNA_P-littoralis_Contig614.31.1|Name=mRNA_P-littoralis_Contig614.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=473bp|location=Sequence derived from alignment at P-littoralis_Contig614:124246..124718+ (Pylaiella littoralis U1_48)
CTGGTTTTGCTTCGCCGCCGCAGATGGGAGTATCTAGTGGGTCGTTGGGT
ACCGCTGCAGATGGCGAGATCCGGAGACGTCGTGGGCGTCAAGAGGTGGG
TGACTGCGTGCAACGGGGCGCGATCGCCCGCGTTGCGTACCCCCCGTTGT
ATCATACTCGGAGTATATAAGTACTGCTGCGTAGCAACGGTTGGCTTTCG
GGTTTCCGTTGCGTACTGTGTGGCTTTTGTGGGTGAGTTCTTGGCAGGGT
CTAAGAAACACAAACGGCATCAAAAATGCCCTAGGACAACGCGGGTTTTA
AACGTGCATGCATTATGTATGTGCATGCTTTTTTGTTCCCGTTGTAATCG
TTTTGTGCTGCGTGTTGCGTGCTGCTGCTGCATGCTGCTGCTGCTGCTGC
TGTGATCTCTCCTCTCTTCGACTTCACACCCAACCTCCCTCCTGCTTCCC
AACCGCCCCTCCTACGCCGCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig614:124246..124718+

>mRNA_P-littoralis_Contig614.31.1 ID=mRNA_P-littoralis_Contig614.31.1|Name=mRNA_P-littoralis_Contig614.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig614:124246..124718+ (Pylaiella littoralis U1_48)
ATGGCGAGATCCGGAGACGTCGTGGGCGTCAAGAGGTGGGTGACTGCGTG
CAACGGGGCGCGATCGCCCGCGTTGCGTACCCCCCGTTGTATCATACTCG
GAGTATATAAGTACTGCTGCGTAGCAACGGTTGGCTTTCGGGTTTCCGTT
GCGTACTGTGTGGCTTTTGTGGGTGAGTTCTTGGCAGGGTCTAAGAAACA
CAAACGGCATCAAAAATGCCCTAGGACAACGCGGGTTTTAAACGTGCATG
CATTATGTATGTGCATGCTTTTTTGTTCCCGTTGTAATCGTTTTGTGCTG
CGTGTTGCGTGCTGCTGCTGCATGCTGCTGCTGCTGCTGCTGTGA
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