mRNA_P-littoralis_Contig613.43.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig613.43.2
Unique NamemRNA_P-littoralis_Contig613.43.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: D7G8P0_ECTSI (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P0_ECTSI)

HSP 1 Score: 490 bits (1262), Expect = 4.620e-171
Identity = 245/266 (92.11%), Postives = 253/266 (95.11%), Query Frame = 1 
Query:    1 MKFTASLVLSSAACASAFVGTPVSTRASIKSSMVTMSASDPMGSMTRGDALKAAAASAAAAGFVFSNAFPAFADGPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            MKFT SLVLS AACASAFVGTPVSTRAS+KSS V MS SD MGS++RGDALKAAAASAAAAGFVFSN+FPAFADGPY+LPDLPY Y+ALEPYIDAATMKFHHDKHHAAYV NANKALAGKTAPSLL+LQKDAIKTGVRNAGGGHYNHCLFWNTLCNHE SG PS  LAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAM PILGLDVWEHAYYLKYQNRRPEYISAFW+VVNWAVV
Sbjct:   17 MKFTTSLVLSGAACASAFVGTPVSTRASLKSSAVRMSVSDSMGSLSRGDALKAAAASAAAAGFVFSNSFPAFADGPYNLPDLPYSYDALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLDLQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSGTLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVV 282
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: A0A835ZFH9_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH9_9STRA)

HSP 1 Score: 322 bits (826), Expect = 2.460e-105
Identity = 163/226 (72.12%), Postives = 179/226 (79.20%), Query Frame = 1 
Query:  127 GSMTRGDALKAAAASAAAAGFVF-SNAFPAFA-DGPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            G ++R  A++  AA+  A G  F +N+ PA A DGPY LPDLPY YEALEP+IDAATMKFHHDKHH AY+ NANKA+AGK A S+L+LQK AIK GVRNAGGGHYNH LFW TL     SG PS  L  AID +FGS D MK +FG  AAGVFGSGWAWLG T DGKL IT TPNQDNPLMEGAA TAM PILGLDVWEHAYYLKYQNRRPEYI+AFW+VVNWA V
Sbjct:   32 GGVSRRQAIQTGAATVTATGLAFLTNSVPARAEDGPYVLPDLPYAYEALEPHIDAATMKFHHDKHHLAYITNANKAVAGKEAVSILDLQKGAIKAGVRNAGGGHYNHSLFWTTLAPAADSGKPSAALTMAIDASFGSFDAMKEKFGAAAAGVFGSGWAWLGVTKDGKLDITTTPNQDNPLMEGAACTAMIPILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWAKV 257
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: A0A7S3XQ28_HETAK (Superoxide dismutase [Fe] n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ28_HETAK)

HSP 1 Score: 285 bits (729), Expect = 9.530e-91
Identity = 148/227 (65.20%), Postives = 170/227 (74.89%), Query Frame = 1 
Query:  136 TRGDALKA--AAASAAAAGFVFSNAFPAFADGPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAP-SLLELQKDAIKTG--VRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAA-GTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            +R D +KA  AAA  +AA  +     PA+ADGPY+LPDLPY Y+ALEP ID+ATMKFHHDKHHA YVAN NKALAGK    S+L+LQ  A+K G  VRN+GGGHYNHC FWN +   + SG+PS  LA AIDEAFGSMD MK +F   A G FGSGWAWLG   DGKL I GTPNQDNPLM+G     AM PILGLDVWEHAYYL+Y+NRR EY++ FW +VNWA V
Sbjct:   28 SRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWNCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQV 254
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: A0A8J5XSB1_DIALT (Superoxide dismutase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSB1_DIALT)

HSP 1 Score: 279 bits (713), Expect = 2.070e-88
Identity = 140/201 (69.65%), Postives = 155/201 (77.11%), Query Frame = 1 
Query:  202 AFPAFADGPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTG--VRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            A PA A+  Y+LPDLPY YEALEPYIDAATM+FHHDKHHA YVAN NKAL GK A S+LELQKDAI  G  VRN+GGGHYNH LFW  +    G G P+  LA  IDEAFGS D+ K +F   +AG FGSGW WLG  PDGKLAI  TPNQDNPLM+G   T M PILGLDVWEHAYYLKYQNRRPEYIS++++VVNW  V
Sbjct:   54 AAPALAE--YTLPDLPYDYEALEPYIDAATMRFHHDKHHATYVANVNKALEGKPAKSILELQKDAISAGGAVRNSGGGHYNHALFWEEMGPATGKG-PTGALAAKIDEAFGSFDKFKEEFSAKSAGRFGSGWCWLGVKPDGKLAIDTTPNQDNPLMDGGCETKMVPILGLDVWEHAYYLKYQNRRPEYISSWFNVVNWEKV 251
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: A0A7S1DDM0_HEMAN (Superoxide dismutase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DDM0_HEMAN)

HSP 1 Score: 272 bits (696), Expect = 1.700e-85
Identity = 133/193 (68.91%), Postives = 145/193 (75.13%), Query Frame = 1 
Query:  223 GPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKT-GVRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            GPY LP LPY Y ALEP ID  TMK HHDKHH AYV N NKAL GK APS+  LQKDA+K+  +RN GGGHYNH LFW+TL     SG PS  L KAIDEAFGS D+M   F   AA  FGSGWAWLG +P+GKL I  TPNQDNPLMEGA    M P+LGLDVWEHAYYLKYQN+RPEYI AF+SV+NW VV
Sbjct:   82 GPYKLPPLPYDYAALEPAIDEMTMKIHHDKHHQAYVNNVNKALEGKDAPSITALQKDAMKSPALRNNGGGHYNHALFWSTLSPVASSGKPSAALQKAIDEAFGSTDKMVEAFSGCAAKRFGSGWAWLGVSPEGKLVIDSTPNQDNPLMEGAGCAKMIPVLGLDVWEHAYYLKYQNKRPEYIKAFFSVINWGVV 274
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: A0A7S3WV96_9SPIT (Superoxide dismutase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WV96_9SPIT)

HSP 1 Score: 267 bits (683), Expect = 2.110e-84
Identity = 132/198 (66.67%), Postives = 152/198 (76.77%), Query Frame = 1 
Query:  199 NAFPAFADGP-YSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNW 789
            +A PA AD P ++LP LPY Y+ALEP+IDAATMKFHHD HH AY+ N NKA+AGK A SL+ L  DA K  + NAGGGHYNHCLFW T+    G GTPS  LA+ I++AFGS D+ K+QF T AAGVFGSGWAWL  T DG + IT TPNQDNPLM+        PILGLDVWEHAYYLKYQNRRPEYISAF++V+NW
Sbjct:   21 SASPALADDPMFTLPPLPYAYDALEPHIDAATMKFHHDFHHQAYITNLNKAMAGKPAASLVSLMPDAKKNKLNNAGGGHYNHCLFWTTMGPKAG-GTPSGVLAEKINDAFGSFDDFKSQFSTAAAGVFGSGWAWLVVTKDGSVKITSTPNQDNPLMDS---NGEIPILGLDVWEHAYYLKYQNRRPEYISAFFNVINW 214
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: L1K0Q9_GUITC (Superoxide dismutase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K0Q9_GUITC)

HSP 1 Score: 268 bits (684), Expect = 6.840e-84
Identity = 129/196 (65.82%), Postives = 148/196 (75.51%), Query Frame = 1 
Query:  217 ADGPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTG--VRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            A+G +SLP LPY Y++LEPYID  TMK HHDKH  AY+ N NKAL GK A  L ++QK+AIK G  +RN GGG+YNH LF+  +     SG PS  L KAID +FGSMD+MK +F   AA  FGSGWAWLG TP+GKLAIT TPNQDNPLMEG  G  M P+LGLDVWEHAYYLKYQNRRPEYI+ +WSVVNW  V
Sbjct:   66 AEGAFSLPALPYDYKSLEPYIDEETMKLHHDKHFNAYLTNLNKALEGKPAAKLTDIQKEAIKAGPAIRNNGGGYYNHALFFKEMGPAANSGKPSAALQKAIDASFGSMDKMKEEFNAAAAKRFGSGWAWLGVTPEGKLAITSTPNQDNPLMEGCEGQKMIPVLGLDVWEHAYYLKYQNRRPEYITNWWSVVNWEAV 261
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: A0A7S3APP8_9EUKA (Superoxide dismutase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3APP8_9EUKA)

HSP 1 Score: 263 bits (672), Expect = 2.840e-82
Identity = 135/224 (60.27%), Postives = 159/224 (70.98%), Query Frame = 1 
Query:  136 TRGDALKAAAASAAAAGFVFSNAFPAFA---DGPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            +R D L   AA++AA      NAF   A   DG ++LP LPY Y ALEP+IDAATMKFHHD HH AY+ N NKA+AGK A SL+ L   A    + NAGGGHYNHC+FW T+    G GTP+  LA+ +D AFGS DE K+QF   AAGVFGSGWAWL  T DG + I  TPNQDNPLMEGA    + PI+G+DVWEHAYYLKYQNRRPEYI+AF++VV+W  V
Sbjct:   34 SRRDVLGLVAAASAA------NAFQGAAVAQDGMFTLPPLPYDYAALEPHIDAATMKFHHDFHHQAYINNLNKAMAGKDAVSLVSLMPGAKAAKLNNAGGGHYNHCMFW-TIMGKGGGGTPTGVLAEKMDAAFGSYDEFKSQFSAAAAGVFGSGWAWLAVTSDGSVKIVTTPNQDNPLMEGATEAGLIPIMGIDVWEHAYYLKYQNRRPEYIAAFYNVVDWTKV 250
[Close]
BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: A0A7S0L727_9EUKA (Superoxide dismutase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L727_9EUKA)

HSP 1 Score: 261 bits (668), Expect = 3.090e-81
Identity = 135/223 (60.54%), Postives = 160/223 (71.75%), Query Frame = 1 
Query:  133 MTRGDALKAAAASAAAAGFVFSNAFPAFA-DGPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            +TR +AL    A+A AA  + + + PA A D  +SLP LPY Y+ALEP++DAATMKFHHD HH AY+ N NKA+AGK + SL+ L   A    + NAGGGHYNHCLFW T+    G G P+  LA  ID AFGS DE KA+F   AAGVFGSGWAWL    DG + I  TPNQDNPLM+GA    + PILG+DVWEHAYYLKYQNRRPEYI+AF++VVNWA V
Sbjct:   60 ITRRNALNLGVAAAVAAPLLGAQS-PALAEDAMFSLPPLPYAYDALEPHVDAATMKFHHDFHHQAYINNLNKAMAGKPSASLVSLMPGAKAAKLNNAGGGHYNHCLFWTTMGPKCG-GAPTGTLATKIDAAFGSYDEFKAKFSAAAAGVFGSGWAWLAVAKDGSVQIVTTPNQDNPLMDGATEPGLVPILGIDVWEHAYYLKYQNRRPEYITAFYNVVNWAKV 280
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BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Match: A0A7S3RIY5_EMIHU (Superoxide dismutase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RIY5_EMIHU)

HSP 1 Score: 260 bits (664), Expect = 3.260e-81
Identity = 135/225 (60.00%), Postives = 158/225 (70.22%), Query Frame = 1 
Query:  130 SMTRGDALKAAAASAAAAGFVFSNAFPAFA--DGPYSLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRRPEYISAFWSVVNWAVV 798
            S+ R  AL   AA+ AA G     + PAFA  D  ++LP LPY Y+ALEP+IDAATMKFHHD HH AY+ N NKA+AGK    L+ L   A    + NAGGGHYNHC+FW+TL    G G PS  L  A+ +AFGS D+ KAQF   AAGVFGSGWAWL    DG + I  TPNQDNPLM+GA    + PILG+DVWEHAYYLKYQNRRPEYI+AF++VVNWA V
Sbjct:   21 SVDRRGALGLGAAACAALG----TSMPAFAADDPMFTLPPLPYAYDALEPHIDAATMKFHHDFHHQAYITNLNKAMAGKPKADLVSLMPGAKAAKLNNAGGGHYNHCMFWSTLGPKAG-GEPSGALGDAMAKAFGSYDDFKAQFSAAAAGVFGSGWAWLAVAKDGSVKIVTTPNQDNPLMDGATEAGLIPILGIDVWEHAYYLKYQNRRPEYIAAFYNVVNWAKV 240
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig613.43.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8P0_ECTSI4.620e-17192.11Superoxide dismutase [Fe] n=1 Tax=Ectocarpus silic... [more]
A0A835ZFH9_9STRA2.460e-10572.12Superoxide dismutase [Fe] n=1 Tax=Tribonema minus ... [more]
A0A7S3XQ28_HETAK9.530e-9165.20Superoxide dismutase [Fe] n=2 Tax=Heterosigma akas... [more]
A0A8J5XSB1_DIALT2.070e-8869.65Superoxide dismutase n=1 Tax=Diacronema lutheri Ta... [more]
A0A7S1DDM0_HEMAN1.700e-8568.91Superoxide dismutase n=2 Tax=Hemiselmis andersenii... [more]
A0A7S3WV96_9SPIT2.110e-8466.67Superoxide dismutase n=1 Tax=Strombidinopsis acumi... [more]
L1K0Q9_GUITC6.840e-8465.82Superoxide dismutase n=1 Tax=Guillardia theta (str... [more]
A0A7S3APP8_9EUKA2.840e-8260.27Superoxide dismutase n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0L727_9EUKA3.090e-8160.54Superoxide dismutase n=1 Tax=Coccolithus braarudii... [more]
A0A7S3RIY5_EMIHU3.260e-8160.00Superoxide dismutase n=2 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig613contigP-littoralis_Contig613:162386..168522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8P0
PFAMsSod_Fe_C,Sod_Fe_N
Model size1329
Max annot lvl2759|Eukaryota
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categorychloroplast
Exons8
Evalue2.12e-174
EggNOG OGsCOG0605@1|root,KOG0876@2759|Eukaryota
Ec32 ortholog descriptionmanganese superoxide dismutase
Ec32 orthologEc-22_002450.1
EC1.15.1.1
Descriptionoxidoreductase activity, acting on superoxide radicals as acceptor
Cds size870
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig613.43.2prot_P-littoralis_Contig613.43.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig613 162845..168522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791279.1263986-UTR-P-littoralis_Contig613:162385..1628441680791279.1263986-UTR-P-littoralis_Contig613:162385..162844Pylaiella littoralis U1_48UTRP-littoralis_Contig613 162386..162844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791279.1384706-CDS-P-littoralis_Contig613:162844..1630651680791279.1384706-CDS-P-littoralis_Contig613:162844..163065Pylaiella littoralis U1_48CDSP-littoralis_Contig613 162845..163065 -
1680791279.1518707-CDS-P-littoralis_Contig613:163403..1635541680791279.1518707-CDS-P-littoralis_Contig613:163403..163554Pylaiella littoralis U1_48CDSP-littoralis_Contig613 163404..163554 -
1680791279.1718128-CDS-P-littoralis_Contig613:164140..1642111680791279.1718128-CDS-P-littoralis_Contig613:164140..164211Pylaiella littoralis U1_48CDSP-littoralis_Contig613 164141..164211 -
1680791279.181636-CDS-P-littoralis_Contig613:164597..1646791680791279.181636-CDS-P-littoralis_Contig613:164597..164679Pylaiella littoralis U1_48CDSP-littoralis_Contig613 164598..164679 -
1680791279.1906266-CDS-P-littoralis_Contig613:165032..1650801680791279.1906266-CDS-P-littoralis_Contig613:165032..165080Pylaiella littoralis U1_48CDSP-littoralis_Contig613 165033..165080 -
1680791279.2035518-CDS-P-littoralis_Contig613:165464..1656051680791279.2035518-CDS-P-littoralis_Contig613:165464..165605Pylaiella littoralis U1_48CDSP-littoralis_Contig613 165465..165605 -
1680791279.215054-CDS-P-littoralis_Contig613:165921..1660401680791279.215054-CDS-P-littoralis_Contig613:165921..166040Pylaiella littoralis U1_48CDSP-littoralis_Contig613 165922..166040 -
1680791279.2250385-CDS-P-littoralis_Contig613:168485..1685221680791279.2250385-CDS-P-littoralis_Contig613:168485..168522Pylaiella littoralis U1_48CDSP-littoralis_Contig613 168486..168522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig613.43.2

>prot_P-littoralis_Contig613.43.2 ID=prot_P-littoralis_Contig613.43.2|Name=mRNA_P-littoralis_Contig613.43.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp
MKFTASLVLSSAACASAFVGTPVSTRASIKSSMVTMSASDPMGSMTRGDA
LKAAAASAAAAGFVFSNAFPAFADGPYSLPDLPYPYEALEPYIDAATMKF
HHDKHHAAYVANANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLF
WNTLCNHEGSGTPSPKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWL
GCTPDGKLAITGTPNQDNPLMEGAAGTAMFPILGLDVWEHAYYLKYQNRR
PEYISAFWSVVNWAVVRHTTAAWIRQCCCSKEYYRRFCT*
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mRNA from alignment at P-littoralis_Contig613:162386..168522-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig613.43.2 ID=mRNA_P-littoralis_Contig613.43.2|Name=mRNA_P-littoralis_Contig613.43.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6137bp|location=Sequence derived from alignment at P-littoralis_Contig613:162386..168522- (Pylaiella littoralis U1_48)
ATGAAGTTCACCGCATCTCTCGTCCTCAGCAGTGCAGGTGAGGGGCTTTA
GTTTTCGTTGCACTATCCGCACGCGGGTGTGCATGCACCGACGCTGAAAA
TGCTACCATCGAAGCACACAAATAAGGGCTGTCCTCCTTTCTGCCTCTCG
TTTTTTCTAGGCTGGAGGGTTTCTCGCTCAAATCGCGCCCCAACAAATGG
CCGCGTGCATGTTTGATCGCTCACTCGGTGCGCGTGCGCAGAGGCAGCAA
CCCAAACCCACCGAGAGTACTGTGCGATGAAGCGCTTGGTAGTGAAAAAA
CGGCTCGTTCTAGGCGGTAGGCTCCTCATCTAGCACTTTGTGGGATGTGT
CCCATCTGCTCTCTCCACGCTTCCTGCCTCTTTTGTTCATGTTCGCTCCC
GTTTATTGCCCGCTTCCGTGTGGGTTGATCTCTCTGATGTCCATCAGGAG
GGTTCAAAGCGAAGGACGCCACAGCAGTATCATACAGCACGTGCTCTGTC
TGTCTGTTCTGCAACACCACGCTGTGGGTTAGGTCCCTCTGTGTGTACAT
ACAGCATGTGGACAGCAAGTTGACACTTTGCACGAACTCCATCCTGAAAA
TGAGCTGGTTGAACATGCAGTCTTTACGATCTGTCACTGGCTCACTGGCG
GCGAATGTCTCACACGGGAGAACACAACATCAGGGTCCAGAGTTTCAGTG
TTTCAGTGTTTCCGTTTGTGCCGCCCCCAGTAACGCAGTACACTAGCTCG
AGTACCCAGCAAATCATATGATCAAATAGGAGTTGCAACAAAAGTTCAAC
TTTCCTCGTCCGCCATATGGTATGATACAGCAGTACGTGTTGATGGGGTC
GTCGCGTCTTCGATTTTCAGTCCACACTTCATTCTGCCCGTCTGTCCATG
TCTTGGCGAGAGACAGGACCATCGAGATTTGACTGGTTTCGACCAAAGAG
CGAATACTGCTGTACTTCGTTCATATGATATGATACTTCGAAGTAAAACG
CAACCTTTCATTTGATGTGATAGCATTTCGAAATCCAGCATGCACATGAT
TGTCGTTCCGCCCATCTTCACTGCTGGATTATAAAGTATTATTTTTCACA
AAAGTGTATGTACACAGCCTAAATGACCGCCCCCCACCCTCCCCCATGGG
CCCATATTTCGAGCGCGATCGAGATATGTATACTGTACCCGCAGCACAAA
GAGTCTCTGTGTGTCTCATGTGGTAGCGTTGGAAAGATCCCAACGTGTTT
TTTTTTTAGCCCGTTTTTTTTGGGTATATCATCGACCCGTGAAAATCAGT
CCACGGAGGGGAGGTAGTGTGCCACGACCTTACACCGTGCGGTATATCAT
AGTGCCCGTACCACAGCAACGAGATCAATTCAAGTGTGCTTATCCGAAAT
CGCAAAATAGATGGCGCGCTCAGGACGCAGAAAGAGTAGCAGACACTGAT
CTCAAGCCCCGAAGAGTGCAGATCCTTCTTTTTAACAGCACAGCTATTCT
GCTTTTTGCTGCTCAACTACCATCCATCATCATTTTTGACGCCACCGTGT
GTTCCGTTCGAGTACCGGTCATTCTTCGGCAGTACCTGCAGAACACTTTG
ATGGTATGATATGATAGCAGTAAATTGTTGTGTGCATGTGTTATTCCACA
CGATTCTCACAATACGGGGCCCGCGCCCCCCCCTTCCCCCAGTTGGACCC
CCCATGAAAGAAAGCCTTCACGCAGCTTCCAACTACTGAAATCATATGAT
ACCTATCGGCAGCCACATTCTGTCTGCCGTGGAATGTGCGATTTTTAGGA
CCGTTATCTGTCACTCTCCCACCCCACTACCTGTCCATGCTCTCCAAGCA
CCAAATACTTGACTTGCCCAATGGTGATCCGAATACTAAGCGACTTAGCC
CGAGATCCACCCGCTGGGTACGGGTTGCGCCGGCAGTGCGTGGCCATACG
GTTGGGGAAGTATGCAGCGTTAATAACGGCCCCACTGCCAAAAAGTGTGT
TTTACAAGAAGACGAGGCTGACGTTCTCAAAAATTCACCACTACACACGA
GTTCGTACCGGGCAGAAGATGTCAATCGGCCCCAGGTGTTGACTGGTGCT
TTAAGTCTTTTACTTCGTATACTCTGTAGTAGGCCACGAGCAATCTCCGC
CGTGCGTGAGGAAAGCGAGGCTGAGCCTGTTTTCGGGTGTGTTGCGTGAC
GAGGTCGGTACTGCTGTGTGCACGGTGCCCTACAGGGCAGCGTTTAAAGG
AGGACAGGACACCATGTTGCTTCGGAATCATCCACCACCAATGTGGTATC
CAATATCTTCTCACGGAGAGCGGAGGGGTGTCAGTGGTGCAGCTGTACGA
TATGCCCTCGCCGTTCTCGCGTTTGGACGCTTTTACTCTTCAGTGATTTT
TGTTGCTCACGCCTGCTCTCCCCACCCCCAATCCCAACCGTTCCGCCGGG
GCCTTGATTTTGTTTGTTCTTGCTGTCAACAGCATGCGCATCGGCCTTCG
TGGGCACGCCGGTGTCGACCCGGGCGTCGATCAAGTCGTCCATGGTGACC
ATGAGCGCTTCCGACCCGATGGGGTCGATGACCAGGGGTGACGCTCTCAA
GGTGAGTCGAAAGGCCTTGCCGCTTACCTCGTTTTCAAATGCCTGCTTTG
TTCATTCATGCTGCTGCTGCTGCTGCTGAGGCCGTCGTCGTCGACGTTCG
TCGTTGTTGCTGTGGCCGGTTGGAAAGAGAACGAGACATTTTTGTTTTTC
AAAGCTGTCCGGAAGAGGATAGATGGGTGCGAGCAAAGACAGAGCGCCTG
GATCCTGTAGACGCTGCTGTATCCTCAGACCTTGTTTTCACGCGCATGCC
GTCGACGGCCACTTCTTCCCCAAAATGTGCCGAAATCCACTCGTATCGTC
ATGTGTGGGTATGCCAGGCCGCAGCAGCCTCCGCCGCCGCCGCTGGGTTC
GTGTTCTCCAACGCGTTCCCCGCTTTCGCCGACGGGCCTTACAGTCTTCC
CGACCTTCCGTACCCCTACGAGGCTCTCGAGCCCTACATTGATGCGGCGA
CCATGAAGGTTTGTTTTGGTGAAAGTGCATATATCTGCCGTAGATTCACT
GCGCTGTGGTGTGATGTGATACAACATTGTACCGAAACCCCACCCACTAC
GTTCATCTTGAACGCTTGAACATGAATCCCTCAAGCTGGGCTGATGCCGT
GTGGTTGCAACGTACACGTTCTTGCAGCCTGCTCGACCCTGTTTCCTGCT
TGAACAATCGACCGCATCGACACTGCCTAACATGACCACGTTATTCTACC
GCTGCTGCTGCTGATAATGATGATGATGACGATGACGCTGGTCTTCCGAT
GTTGCTGTTGCGTCGGTTGCTGGCTTTTGTGGGGGCGGGGGGGGCGAACG
GATGGACAACGCGGAATTTAATTTCCCGCCTTGATGTGACAGTTCCACCA
CGACAAGCACCACGCCGCCTACGTGGCCAACGCCAACAAGGTGTGCGTGT
ACATTGGCCGGCAGTAGGGTTGTTTGCCGCCTCGACATACAGACCTTGCA
TACGCGTGCTTGGCGTGTATTGTTTTGTTTAGTCGCCCTTTCTCTGTACG
TCACTGACTGGTTCCTTGGCTCGCGCCTTCCACGTCGGATGCGTGTTGAC
TTCTGTCGTGTGCCTTTTCATTCTTGCACTGAATCGGCAACTTTTGTGTG
TTCTGTGTCTTTTTTGGCTCAGGCTAAGAAAATCATCGAAATGAATTATG
ATGTGTGTGTGTTCTGGATTATTTGTTTTGCCGGAAGAAATTATTCGGTA
AGTTGGATCCTAAAAGTGTGTGTGTGTGGTGTAACCGGAGCAGGCCCTCG
CCGGCAAGACGGCCCCTTCTCTGCTGGAGCTCCAAAAGGATGCCATCAAG
ACCGGAGTCCGCAACGCCGGAGGCGGTAAGCACATCAATAGCCAGTCCAC
GCTTCGGACAGCAGTACTGTACACCTTTTTTGCTTCGGAGTCCGCCGGTT
TCAAAACCCAAACTTGTTTCCGTGGTCGCTTCCTTCCTCTCAGCGCCCGT
CGGAGTATCTCAGGATCACCCCCTCGTTGTTGTCTCACCCGTGTATGATA
GCTGCATTCCTACGAGTTCAGTGTAAACCTCCCCATGTCACTACACATGG
ATCGGAACCCACGCTGGTCCCGCTTTTTTTTTCGTTTTCTTATGAAGGTT
GCTGTGCGCTCCTTCCCCTCGTACAATCCCGACCCCCTTCCTGCCCTGTC
CCTCCTCCCACGTGTACGTATGTGTGCGTATGCGTGTGTATTTCGTTTTC
TCTCGTTTCAGGGCACTACAACCACTGCCTTTTCTGGAACACGTTGTGCA
ACCACGAAGGCAGCGGCACTCCTTCTCCTAAGGTATTGACTTTTCCACCG
CCCTTCGCAATGCTTTCTCGCTCTGTCCATCAATCCACGTGCAACGCGGA
ACGTTGTTCGGTACAATTACTGCGAATGAATACCAGCAGTGACGGGAAGG
GGTTGTCAAGGTCCTTGCGGTTGTTTTTTTGTCGCTGTTGTTCTGAGAGT
ACCTGGGCGATATTTTGTCTCCACAATACTTCTCGCGGCACAAACGCTTC
CGTGATAATTTCCTCGTTTCTTCCGCTGACTGGGAGCAGACTCTCCGACC
CGTTCCGTGTACTGAACGATATGGCGTTACGGCCAACCAGCATGTTGGTC
ATGGTGAACCGGTGTTGAGTCGGAAGCACCAATACCGTTCAGAGTTTAGA
CACATTGACTACACGATACGATAGCTAACCAATTTGCGAACATCTGAAAG
CCGAAACAGTTGTCTTGTCACCTTCGTTCCCGTGTTCCTCTGTACTCTGG
CGTATCGGCTTTCCCTCTCTCTGCCTCTTGGTCTCTCAATCCCTCTGTTT
TCCTCCGAATATTGCCGTTGATAATCACCGTTGCTGCTGCTGTTGCTGCT
ACGCGAAATGTGTTGCAGCTGGCGAAGGCGATCGACGAGGCGTTCGGGTC
GATGGACGAGATGAAGGCCCAGTTTGGCACCACCGCCGCAGGCGTTTTCG
GATCGGGATGGGCCTGGCTTGGTTGCACCCCCGACGGAAAGTTGGCCATC
ACCGGCACCCCTAACCAGGGTGAGTTCACTACGGAGGCGAGAGTAGGAAC
GTCTTCATAGTTTGTGGGTGCGAGTATCAAATCATACGAAGTTTATGGTA
TATCAATTGGATATTTTTTGAGAGGGCTCTTATCTACCCGTTGAGATCGA
TTTTGCTTCAGAGCCACCTCTCCCCGTTAGGTCTCGAGTGGCTCCAAAAA
AAGCAGCAAGACTACCTGTTTTCGTGGTGAGCAAGATGCCTGCCCAGTCG
ATGACTTTGAAGCCAAATGACCATACAAATGTGCACGACCCCCTCCCCCC
GCACCTAACGTGCCCTTCGCGGCGGCGATGCCCCCCTTGCATGACGTGAA
ACGGCAGACAACCCCCTTATGGAGGGCGCAGCCGGCACGGCCATGTTCCC
CATCCTCGGCCTCGACGTGTGGGAGCACGCCTACTACCTCAAGTACCAGA
ACCGCAGGCCTGAGTACATCAGCGCCTTCTGGAGCGTGGTCAACTGGGCT
GTGGTGAGACATACTACAGCAGCATGGATACGTCAATGCTGCTGTTCTAA
GGAGTACTACCGTAGATTTTGTACATAGTTGCCTGGTTTGTGTGCGGGTA
TGGAATCCCTGGAGATAAAGGTGTGTGTGCATGCTGCAGCGAGTAGGTCA
CTCTGTTCTAAACAAAAAGAACCTCACGCCTGAGCACGTGAGCGCTTCCT
GGAGCGTTTTTTAGTACAGTAGAGAGTCGATATGTGTTCCTAACTCGCTC
AATATCGGAATGGCACCCCTTTGCCCGCCCTGGCGCAGGGTGAAAAAGGC
ATCTCCGGTGATGTGCTCTGCGTGGTACCCTGTTGGCTGGCCCGGCGCTG
TAGCGGTTGAATGATTGTGTGCGCCCTTTTTTTCCTCGCGTGTGCGGTTT
TCGTCGTTCGTCGTTCGAAGGAAATGGGTCTTGTGAGAAACGGTTTTTTG
GGTGCGGCGTTGCAGACAGACGACAGACGTTGCACCCGGAGAACCCAGGC
TGACTCAGCATTTCTCGGCGCGCGCAACACACACACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig613:162386..168522-

>mRNA_P-littoralis_Contig613.43.2 ID=mRNA_P-littoralis_Contig613.43.2|Name=mRNA_P-littoralis_Contig613.43.2|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig613:162386..168522- (Pylaiella littoralis U1_48)
ATGAAGTTCACCGCATCTCTCGTCCTCAGCAGTGCAGCATGCGCATCGGC
CTTCGTGGGCACGCCGGTGTCGACCCGGGCGTCGATCAAGTCGTCCATGG
TGACCATGAGCGCTTCCGACCCGATGGGGTCGATGACCAGGGGTGACGCT
CTCAAGGCCGCAGCAGCCTCCGCCGCCGCCGCTGGGTTCGTGTTCTCCAA
CGCGTTCCCCGCTTTCGCCGACGGGCCTTACAGTCTTCCCGACCTTCCGT
ACCCCTACGAGGCTCTCGAGCCCTACATTGATGCGGCGACCATGAAGTTC
CACCACGACAAGCACCACGCCGCCTACGTGGCCAACGCCAACAAGGCCCT
CGCCGGCAAGACGGCCCCTTCTCTGCTGGAGCTCCAAAAGGATGCCATCA
AGACCGGAGTCCGCAACGCCGGAGGCGGGCACTACAACCACTGCCTTTTC
TGGAACACGTTGTGCAACCACGAAGGCAGCGGCACTCCTTCTCCTAAGCT
GGCGAAGGCGATCGACGAGGCGTTCGGGTCGATGGACGAGATGAAGGCCC
AGTTTGGCACCACCGCCGCAGGCGTTTTCGGATCGGGATGGGCCTGGCTT
GGTTGCACCCCCGACGGAAAGTTGGCCATCACCGGCACCCCTAACCAGGA
CAACCCCCTTATGGAGGGCGCAGCCGGCACGGCCATGTTCCCCATCCTCG
GCCTCGACGTGTGGGAGCACGCCTACTACCTCAAGTACCAGAACCGCAGG
CCTGAGTACATCAGCGCCTTCTGGAGCGTGGTCAACTGGGCTGTGGTGAG
ACATACTACAGCAGCATGGATACGTCAATGCTGCTGTTCTAAGGAGTACT
ACCGTAGATTTTGTACATAG
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