mRNA_P-littoralis_Contig613.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig613.5.1
Unique NamemRNA_P-littoralis_Contig613.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: D7G8M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8M9_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 1.980e-91
Identity = 148/273 (54.21%), Postives = 180/273 (65.93%), Query Frame = 1 
Query:    1 MGTGENELLVPREGVFGYTAGPLSSGAD--DTPRQRHQ--------PGLRKVLLPLMVTLGIFGASTGGARFLFPRKKIQRQXXXXXXHLLQGKLESIDRFHAVRDDTGYLTIECASADYTVMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLLDLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPLDTNCFCSVDTCAD 789
            MG GE+E LVP        +GP+  G+   ++ R  HQ        PG  K++ PL+V LG+FG STG AR+LFPR+K+Q Q             E ++R  AVR     +T ECA+A   VM+G DLT YFSLE G   V GV E+ + YNGY FWF S ENKA+FEE P SYIP WGGFCSWGI+RE+WW  D LGP ADPNQW+ITDDG L FFRSELPM++FL D+PGN+  G++ W  WWGDVEP A    GSPLDT+CFCS +TC D
Sbjct:    1 MGLGEDEFLVP--------SGPMMGGSSSRESLRSHHQXXXXXXQPPGPWKLVRPLLVALGVFGVSTGAARYLFPRRKLQPQR------------EQLERLVAVRTGESPVTSECATAAKVVMEGADLTRYFSLELGAAAVYGVEEHEALYNGYKFWFESAENKAMFEESPKSYIPQWGGFCSWGISREDWWNADELGPPADPNQWLITDDGGLHFFRSELPMSKFLGDVPGNIVAGNQIWHSWWGDVEPAA-DGAGSPLDTDCFCSTETCED 252
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: D7G5N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N6_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.240e-57
Identity = 105/255 (41.18%), Postives = 147/255 (57.65%), Query Frame = 1 
Query:   28 VPREGVFGYTAGPLSSGADDTPRQRHQPGLRKVLLPLMVTLGIFGASTGGARFLFPRKKIQRQXXXXXXHLLQGKLESIDRFHAVRDDTGYLTIECASADYTVMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLLDLPGNLEKGDRQWQEWWGD-VEPGAYPFGGSPLDTNCFCSVDTCAD 789
            +P +   G   G +        R+R   G+   ++ L++ +G+F A+T   R +  +K+  RQ           +L ++        D+   T EC ++   V+ G D+ SYFSL+ G   + G  EY   YNGYTF FAS +NKALFE  PL YIPAWGGFC++GIA E+WWT  TLGP +DPN W+ITDD  LR FRSE+P   F+ D+PGN+  G+R W  WWG+   PGA   G S ++T C C+++ C D
Sbjct:    1 MPHDESSGLLGGKVDRDRQGAVRRR---GVAGPVIALLLAIGVFVAATAPGRLVSVKKEENRQ-----------ELLAVS-------DSQTTTWECGTSTEPVLNGADVVSYFSLKEGEAAMYGFEEYPVKYNGYTFLFASAQNKALFEASPLDYIPAWGGFCAYGIAAEDWWTVSTLGPPSDPNSWLITDDNVLRIFRSEVPKAYFMEDIPGNIATGNRIWTGWWGEGTLPGADDTG-SAMNTACLCNIEICLD 233
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: D7FW13_ECTSI (YHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW13_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.310e-37
Identity = 75/164 (45.73%), Postives = 99/164 (60.37%), Query Frame = 1 
Query:  304 TIECASADYT-VMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITD-DGKLRFFRSELPMTEFLLDLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPLDTNCFCSVDTCAD 789
            T +C    +  V+ G D+ +Y++L AG+ PV G     S +  Y F+F+S EN   FE  P+ YIPAWGGFCS+G+A E +W  D LGP  DP++W+I   DGKL  FRSE PMT+FLL    NLE GD  W  W+   E G    G +PL+T C CS + C +
Sbjct:  103 TADCTGDTHLPVLGGVDVVAYWTLPAGSKPVFGTPNLVSLFGDYRFYFSSIENLRTFESDPVRYIPAWGGFCSYGVAAETFWRPDILGPFGDPSKWLILPGDGKLHVFRSERPMTKFLLAPGENLEAGDAIWNGWF-PAERG----GAAPLNTACLCSEEMCVN 261
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: A0A6H5JXZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ9_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.880e-33
Identity = 69/164 (42.07%), Postives = 100/164 (60.98%), Query Frame = 1 
Query:  304 TIECAS-ADYTVMQGYDLTSYFSLEAGNTPVQGVAEYASSYN-GYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLLDLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPLDTNCFCSVDTCAD 789
            T EC        ++G+DL +Y SL+ G   V+G+ E++  Y  GYTF F++ EN+  FE  P  Y+PAWGGFCS+GI+ E+ W  D LGP ++P+ W+I DD +L  FRSE P  +F  D    ++ G++ W EW+G   P       +P +T CFCS ++CAD
Sbjct:  101 TAECTGDTSKPAVKGFDLVAYRSLQPGTHGVRGLWEFSVQYGQGYTFLFSTLENQLEFESDPEKYLPAWGGFCSFGISHEDIWGPDVLGPPSNPDIWLIEDD-RLYLFRSETPYDKFKDDKARYIKHGNQVWTEWFGG-NPSNEGTVMTPFNTACFCSEESCAD 262
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: D7FW15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW15_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 4.180e-32
Identity = 68/164 (41.46%), Postives = 98/164 (59.76%), Query Frame = 1 
Query:  304 TIECAS-ADYTVMQGYDLTSYFSLEAGNTPVQGVAEYASSYN-GYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLLDLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPLDTNCFCSVDTCAD 789
            T EC        ++G+DL +Y SL+ G   V+G+ E++  Y  GYTF F++ ENK  FE  P  Y+PAWGGFC +GI+ E  W  D LGP ++P+ W+I DD +L  FRSE P  +F+ +    ++ G++ W EW+    P       +P +T CFCS +TCAD
Sbjct:  101 TAECTGDTSKPAVEGFDLVAYRSLQPGTHGVRGLWEFSVQYGQGYTFLFSTLENKLEFESDPERYLPAWGGFCGFGISHEVVWGPDVLGPPSNPDFWLIEDD-RLYLFRSETPYGKFMDNKARCIKHGNQMWTEWFAG-NPSNEGTVMTPFNTACFCSEETCAD 262
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: A0A7S2CFY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFY1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.240e-31
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 1 
Query:  334 VMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLL-DLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPLDTNCF 765
            V+ GYDL  Y++L +G+  V G ++Y+ + + Y F+F++ +N   FE  P SY P WGGFC +GI+ E WWTK TLGPDA+PN W I D G L FF  E P T+FL  ++      GD +W  W+ D          + L+T CF
Sbjct:   81 VLSGYDLVEYWNLNSGDDGVIGSSDYSVTIDEYQFYFSNAKNMRSFEADPTSYFPKWGGFCGYGISEETWWTKSTLGPDANPNVWSIID-GDLYFFMFETPQTKFLTGNMTSEKISGDARWTSWFNDT---------TVLNTGCF 215
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: A0A7S3UVA0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA0_HETAK)

HSP 1 Score: 122 bits (306), Expect = 4.030e-28
Identity = 57/144 (39.58%), Postives = 80/144 (55.56%), Query Frame = 1 
Query:  334 VMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLLDLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPLDTNCF 765
            V++GYD+ +YF L+  +  VQG +E+ S Y G+ F+F+S+EN   FE  P  Y+PAWGGFC++G+A E WWT +T+     P+ W I D G+L FF        F   LP  + +GD  W  W           G    +TNCF
Sbjct:   16 VLEGYDVVAYFGLDPLDDGVQGSSEFTSVYQGFEFYFSSKENMEKFESDPEKYVPAWGGFCAYGVAEETWWTAETMSAGVVPDAWRIID-GRLFFFHDIGVAAWFAALLPDAIREGDATWHGW-----------GLEGYNTNCF 147
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: F0Y5C1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5C1_AURAN)

HSP 1 Score: 126 bits (316), Expect = 2.570e-26
Identity = 58/127 (45.67%), Postives = 79/127 (62.20%), Query Frame = 1 
Query:  334 VMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLL-DLPGNLEKGDRQWQEWWGD 711
            V+ G D+ +Y SLEAG     G  E+ +SY  Y+FWFASE N+A F   P  Y P +GGFCS+GI+ E +WTK TLGP ++PN W I D G+L  F    P  +F   ++   L++G++ W  WWGD
Sbjct:   28 VLDGADVVAYHSLEAGANATYGSPEFEASYGDYSFWFASEANRAAFAADPARYAPKFGGFCSYGISDETFWTKSTLGPFSNPNVWRIVD-GRLLVFMYCTPEHKFFSQNITAQLDRGNQIWDTWWGD 153
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: A0A7S2CI31_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI31_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.030e-25
Identity = 56/145 (38.62%), Postives = 88/145 (60.69%), Query Frame = 1 
Query:  334 VMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLL-DLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPLDTNCF 765
            VM GYD+  YF+L+ G    +G  E+ S++ GYTF F + +N   F   P SY+P +GGF ++ I+++ W+T +TLGPDA+PN W IT+D KL FF  + P+ +F   ++   +  G++ W+ ++ D E G        L+T CF
Sbjct:   89 VMDGYDIVEYFNLKPGADGRKGTEEFESTFGGYTFRFLNNKNMKAFGVDPTSYLPQYGGFDAYQISKDSWYTAETLGPDANPNVWKITND-KLYFFMFDTPLKKFETGNMSARIIAGNQIWRSYFNDTEYG--------LNTGCF 224
[Close]
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Match: A0A7S3JR48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR48_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.530e-25
Identity = 58/145 (40.00%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  334 VMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFASEENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITDDGKLRFFRSELPMTEFLL-DLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPLDTNCF 765
            V++G D+ +Y  L  G     G A+YA+ Y  YTF+F + EN+A F   P  Y+P +GGFCS+GI  E +WTKDTLGP+A+ N W+I DD  L  F    P  +F+  ++   +E+G++ W  WW DV            +T CF
Sbjct:  147 VLEGADVVAYRYLNVGANATIGSADYAAKYGEYTFYFENAENRATFLSNPDKYVPKFGGFCSYGITNEFFWTKDTLGPNANKNVWIIYDD-HLFVFMYCTPEHKFVSRNITEEIERGNQIWSTWWNDVPT---------FNTGCF 281
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig613.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8M9_ECTSI1.980e-9154.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5N6_ECTSI1.240e-5741.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FW13_ECTSI6.310e-3745.73YHS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JXZ9_9PHAE4.880e-3342.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW15_ECTSI4.180e-3241.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CFY1_9STRA1.240e-3142.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3UVA0_HETAK4.030e-2839.58Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
F0Y5C1_AURAN2.570e-2645.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2CI31_9STRA1.030e-2538.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3JR48_9STRA3.530e-2540.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig613contigP-littoralis_Contig613:46537..50253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8M9
Model size2715
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue9e-100
EggNOG OGs2D48G@1|root,2SU9E@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002310.1
Cds size795
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig613.5.1prot_P-littoralis_Contig613.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig613 46537..48210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791278.021079-CDS-P-littoralis_Contig613:46536..470101680791278.021079-CDS-P-littoralis_Contig613:46536..47010Pylaiella littoralis U1_48CDSP-littoralis_Contig613 46537..47010 +
1680791278.0347462-CDS-P-littoralis_Contig613:47342..473911680791278.0347462-CDS-P-littoralis_Contig613:47342..47391Pylaiella littoralis U1_48CDSP-littoralis_Contig613 47343..47391 +
1680791278.0484622-CDS-P-littoralis_Contig613:47620..477231680791278.0484622-CDS-P-littoralis_Contig613:47620..47723Pylaiella littoralis U1_48CDSP-littoralis_Contig613 47621..47723 +
1680791278.0590973-CDS-P-littoralis_Contig613:48041..482101680791278.0590973-CDS-P-littoralis_Contig613:48041..48210Pylaiella littoralis U1_48CDSP-littoralis_Contig613 48042..48210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791278.0731554-UTR-P-littoralis_Contig613:48210..493921680791278.0731554-UTR-P-littoralis_Contig613:48210..49392Pylaiella littoralis U1_48UTRP-littoralis_Contig613 48211..49392 +
1680791278.0854063-UTR-P-littoralis_Contig613:49515..502531680791278.0854063-UTR-P-littoralis_Contig613:49515..50253Pylaiella littoralis U1_48UTRP-littoralis_Contig613 49516..50253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig613.5.1

>prot_P-littoralis_Contig613.5.1 ID=prot_P-littoralis_Contig613.5.1|Name=mRNA_P-littoralis_Contig613.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=265bp
MGTGENELLVPREGVFGYTAGPLSSGADDTPRQRHQPGLRKVLLPLMVTL
GIFGASTGGARFLFPRKKIQRQQQQQQQHLLQGKLESIDRFHAVRDDTGY
LTIECASADYTVMQGYDLTSYFSLEAGNTPVQGVAEYASSYNGYTFWFAS
EENKALFEEQPLSYIPAWGGFCSWGIAREEWWTKDTLGPDADPNQWMITD
DGKLRFFRSELPMTEFLLDLPGNLEKGDRQWQEWWGDVEPGAYPFGGSPL
DTNCFCSVDTCADD*
back to top

mRNA from alignment at P-littoralis_Contig613:46537..50253+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig613.5.1 ID=mRNA_P-littoralis_Contig613.5.1|Name=mRNA_P-littoralis_Contig613.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3717bp|location=Sequence derived from alignment at P-littoralis_Contig613:46537..50253+ (Pylaiella littoralis U1_48)
ATGGGGACAGGGGAAAATGAGCTCCTCGTTCCTCGAGAAGGGGTATTCGG
GTACACGGCTGGGCCTCTATCGAGTGGAGCGGACGACACGCCCAGACAAC
GGCACCAGCCGGGCCTTCGAAAAGTCCTTCTGCCTTTGATGGTAACGCTG
GGGATTTTCGGTGCTTCCACTGGCGGTGCCCGTTTCCTCTTCCCCCGCAA
AAAAATTCAGCGGCAACAACAGCAACAACAGCAACACCTGCTGCAGGGCA
AGCTTGAAAGTATCGATCGCTTCCACGCCGTAAGGGACGACACTGGCTAT
CTCACAATCGAATGCGCTTCAGCGGACTACACAGTGATGCAGGGGTACGA
CCTCACGAGCTATTTTTCACTTGAAGCTGGCAATACGCCCGTGCAAGGTG
TGGCGGAGTACGCATCGAGTTACAACGGGTACACCTTTTGGTTCGCATCC
GAGGAGAACAAGGCTCTGTTCGAGGTAAGGTGTAGAGGGTAGGTGGCAAG
AGCAGAACATAAATACGGTGCCTCGTCCCGCTGACCATACAATTCCTCGC
GTACACGATTCATAGTCCACAGCACTACTGTCTTTTTCTTAATTTACTCC
TGTGGCGATACTCATACTGCTGCACACCACAAAGTTGTCTGTCCACCCCG
TTTGGTCGGTGGCATACAAGTGACATGATTTAAACCGTATTATACACTCG
AGTCTAATATCTGATTTATCACTGCTGGTGTCTCCTCCCATCGTCGCCAC
ATGTCTCGAACCTCCTCTACCTGGTACATTCGTGCTGGTGCCTCTCCTGC
CACCAGGAGCAGCCGCTGAGCTACATTCCCGCGTGGGGTGGATTTTGCAG
CTGGGGTAAGTTTGGTTCTGACGGTACTCACCGTACATGATGAATCCGAG
TGAGGCTGCAATGTTTGCGCATTCCCTTTGCTTGTGTGCCGCATGTACGT
CCTCTTTGAGTAGGTGACACGTGTTGAATTTCGATGTCAACTTTTTGTGG
TTCGTCCTGTGCGCACTCAAGTTGAACACCACCTGGCGCTGCGCGACACC
TTTTGTTTTTCACGGGTGCGCGCCTGCCTCACAGGGATTGCCCGTGAAGA
ATGGTGGACGAAAGACACGCTAGGTCCGGACGCGGACCCGAACCAGTGGA
TGATCACGGATGACGGCAAGCTACGCTTTTTCCGAAGGTGGGGTGAAACC
GGCTTGCAGGCCGGTCTGGCGTGCTTATGGTGAAAGTGTTGCGATTACCG
TACATCTCCCGTACGAGCCGCCCGGACTACAAGGAGCACCAGTTTCCCCT
TTCAGGTCGTGTAGCTTCTGTAGACTGCCTTTTTCTGCTTAAAAAAGAGT
TGCTCCCGACCAAATAGCCTTCAATCCAGATGGTCTCCTAGATATGTCGT
TGTTACCGCTGTGACAGCGCCGACATATATCCTGCTGCAAGCGTCGCTCC
TTCCGATTACGAAACATTTTTTCCTCTGCATGTTTCCATCTCGACCTACC
TGCAGTGAGCTGCCCATGACCGAGTTCTTGTTGGATCTCCCGGGTAACTT
GGAGAAAGGCGACCGTCAGTGGCAGGAGTGGTGGGGCGATGTGGAACCCG
GTGCTTATCCCTTTGGCGGCTCACCGCTCGACACAAACTGTTTCTGCAGT
GTCGACACGTGCGCAGACGACTGACAGTCGTCGGTGAATCGCTCTGCCTT
AGTTTCGGTTATGATGCTAATTTTTTTTTTGTCTACGGGAAGCATTATTT
TACCGTGGAATGCGAGTTCTGCAGTCAGACGTGTACAGGGCGATGCCATG
CTGGTTTGAACATTTTGAGGGGAAGGTGCTGGAATGGGAGCATTTTGTTG
CTTTCGACTGCTCCTGTAGCGATCTGTTGCTATGGGCGATGAGAAAGCTA
CCGCGCTCCTCATCTGATCATTTTTAGGTTGATTCTCAATCTTTTCTGTC
ACAAAGCCGCAATCGTTACCAGTACGTACGAGGGGCCAGGTAGACCGAGC
GCTATGGCATGCACCAGACTGACGAAGTTGGTGTCATGGATTCGTTTACT
TGTTCTGTTGCTTTCAGCTGTAATTACGCTGATGCACCCGTACCACCCAC
AACCAGCATACACACACGATTGTCCACGACAACAGCAAGTGCGTGTGAAC
ATTCAACGCATGCCCCGAGGATCCGTCTTCGTTGCTTGTGTAAGTGTACT
CTTTCCTTTTTTGCCCTCGTCCGGTGTTCGTCTCGTAGCGAGTTCGGGTT
AGTTTACGATCTACGAGACTTGGACGTTGGCGGCCGGCATGTTTGCAGGC
ACCGTCGTCAGCGCATGGCCGTAAGTATCGTAAGCTTAGTTTACGATCTA
CGAGACTTGGACGTTGGCGGCCGGCATGTTTGCAGGCACCGCCGTCAGCG
CATGGCCGTAAGTATCGTAAGCTTACAATATCCTTCATCGGGATCAAAAG
GAGTTGGCCTGTTCGGAGCTTCGTTGACAATGAGACATGTGCCATCGTGG
ATCCAGCTGCGGCTGTGGAAGCAAATGGCATGTGCCGTGCCCCTGAGTTT
CAAGCGCCATGTGCTTCATGTTATCCGCCTTTCAAAATATGTAAATGCGT
GATTATCCCAGCGTGGGATCGCGGGACTGTGACCCCCGATATACTTTTTG
ATTTTATTTTTCAGGTGCTCTTGTAGTTGTTCTGTGTCGCGTATGCTTAT
CTCGTGTCACCTCTCGGCAGGGTCTTCTTGACATATTTATTTCTCTTTTA
TGAGAGTAGGTTTCCACGTGGGTGTCGTCGCTCCTGTATTTTTTGTCATG
ATCTTATTGAAAAGCCGGTCGCCCCGGTGGTTCAATGGTCACCTCGAAGC
TTACTGGCACCCAGGACGTGAGAACGAATCCCGGCGGAGGAGGCACACGA
TCTCGGATGTTTCTCTCCACAGATCTCAAGAGTAGAAAACAACGATGTCA
CGAGTAAACAAGCTCGTTCGATCTCACAGTAGACGAGTGCAAGGGATGGT
GAACCTTTCTCTCGATAGAAAGCCAAAGGCAACAAGAGAAACAACCGCAA
ACGGTGGGTTGAAGAAGAAAAAAACAAGAAAAAAACTACTGTGACCCCGG
CTGGTGCACCCACCTTAATCTACTTCAAGGAAAACCTACGGAGTAGACTG
ACTGACTGGTGTTCATGCCGACAAAAAATTGGATGAAGAACACAAAGTAC
CGCTGTGACCTTTGAAGTCATCGCTTCGAGTAGTGCGGAATATCGAGGTG
ATGAGCAGATATACGGAATTCGGAGGTACCTGACGGCTATCGAAGCAGTG
TCTCATACGGTCTTTGGGATACGCCCGCGTCAATGTCCACTCGTATAACA
TTTGCCGACGCAGCATCCAAATTTTTTGGATGTGGGTGGGACTCACGACA
AACTGATGCACGGACGAATACCAGGAAACTGATCTCGTGGACCTTTCCTG
TTTTTTTGCCCAACAGCATCAAGTTTTTGTGAGCACGTGAAACGTGAAGG
CGTGCCATGATAATACTCGAGTTGGTTTCTGGAGTCACGACGAACGTGTG
CAGACGAGTGAAAGCGAACGTGGACTTCGTGTAACTGCCTTCGTTCGGAT
CACAATTCGAAGTGCGAATGTCACGGTGGATGAATGAGCAGAGGGTTTTG
GATTCAGCAGAAACTATACGGGTTCGGCCGGCCTCAAATGGTTCGTGTGA
AGTCAATAATCCCGTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig613:46537..50253+

>mRNA_P-littoralis_Contig613.5.1 ID=mRNA_P-littoralis_Contig613.5.1|Name=mRNA_P-littoralis_Contig613.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig613:46537..50253+ (Pylaiella littoralis U1_48)
ATGGGGACAGGGGAAAATGAGCTCCTCGTTCCTCGAGAAGGGGTATTCGG
GTACACGGCTGGGCCTCTATCGAGTGGAGCGGACGACACGCCCAGACAAC
GGCACCAGCCGGGCCTTCGAAAAGTCCTTCTGCCTTTGATGGTAACGCTG
GGGATTTTCGGTGCTTCCACTGGCGGTGCCCGTTTCCTCTTCCCCCGCAA
AAAAATTCAGCGGCAACAACAGCAACAACAGCAACACCTGCTGCAGGGCA
AGCTTGAAAGTATCGATCGCTTCCACGCCGTAAGGGACGACACTGGCTAT
CTCACAATCGAATGCGCTTCAGCGGACTACACAGTGATGCAGGGGTACGA
CCTCACGAGCTATTTTTCACTTGAAGCTGGCAATACGCCCGTGCAAGGTG
TGGCGGAGTACGCATCGAGTTACAACGGGTACACCTTTTGGTTCGCATCC
GAGGAGAACAAGGCTCTGTTCGAGGAGCAGCCGCTGAGCTACATTCCCGC
GTGGGGTGGATTTTGCAGCTGGGGGATTGCCCGTGAAGAATGGTGGACGA
AAGACACGCTAGGTCCGGACGCGGACCCGAACCAGTGGATGATCACGGAT
GACGGCAAGCTACGCTTTTTCCGAAGTGAGCTGCCCATGACCGAGTTCTT
GTTGGATCTCCCGGGTAACTTGGAGAAAGGCGACCGTCAGTGGCAGGAGT
GGTGGGGCGATGTGGAACCCGGTGCTTATCCCTTTGGCGGCTCACCGCTC
GACACAAACTGTTTCTGCAGTGTCGACACGTGCGCAGACGACTGA
back to top