mRNA_P-littoralis_Contig613.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig613.34.1
Unique NamemRNA_P-littoralis_Contig613.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig613.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig613contigP-littoralis_Contig613:115055..119861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2403
Hectar predicted targeting categoryother localisation
Exons2
Cds size1902
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791277.4790576-UTR-P-littoralis_Contig613:115054..1155401680791277.4790576-UTR-P-littoralis_Contig613:115054..115540Pylaiella littoralis U1_48UTRP-littoralis_Contig613 115055..115540 -
1680791277.5194447-UTR-P-littoralis_Contig613:119846..1198611680791277.5194447-UTR-P-littoralis_Contig613:119846..119861Pylaiella littoralis U1_48UTRP-littoralis_Contig613 119847..119861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791277.4901204-CDS-P-littoralis_Contig613:115540..1173091680791277.4901204-CDS-P-littoralis_Contig613:115540..117309Pylaiella littoralis U1_48CDSP-littoralis_Contig613 115541..117309 -
1680791277.5065784-CDS-P-littoralis_Contig613:119713..1198461680791277.5065784-CDS-P-littoralis_Contig613:119713..119846Pylaiella littoralis U1_48CDSP-littoralis_Contig613 119714..119846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig613.34.1prot_P-littoralis_Contig613.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig613 115541..119846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig613.34.1

>prot_P-littoralis_Contig613.34.1 ID=prot_P-littoralis_Contig613.34.1|Name=mRNA_P-littoralis_Contig613.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=634bp
MRMNHASACPIETAKEEGTGRGTYETAVHRNICTWEAIKVEDARGSPTTA
SSSSSFLSPTTEEDGPCLIALRVLLGEMDGGQNNDNRCSQWVSSTRELRL
VSFDLCNACRSALASRVWIGENTPRSLWARRSRQQRDGDTRGGPSLVGTP
ISNKSVTGRESTPPLFPSTHLRRRMLSDVRATTVVWDRSAGEISSAQDFL
ENVVRLKFGFHFNEPLAFKKTARFRWPGTLVALDLGVKFQQDLSGVSLPP
ALLELRFGAMFNRSIQRVSWPSRLVRLTFGASFNKPIIGIRWPATLKHLE
FADNFDQPFVQRSTTASAADSVVWPPLLESLKFGTDFSHTIGGGGGTLAG
AGAEGCGRNGCCGGGGGLPPSLKRLTLSEGFLQPIDTVTWPDGLNELNLD
CCHVSAAGEGRLPAGLKRLRIDLDFHQPIRDVMPLLPATLEEVAFGNTFN
QPLRGVKWPDGLKKVAFGASFNKPIEDDSVRFPPHLEELEFGFRFNQQIT
HVAWPASLQYLTFRDHFNQPVAAVCWPEGLKELRFGRMFDRPFSSGGEAV
RWPTRLCKLALGKNFNQPVHAFCLPPGLAELELSEGCQQPLEGVRWPARL
RLITVGLGFGGGMAELADGGGLALSEGCRLRRS*
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mRNA from alignment at P-littoralis_Contig613:115055..119861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig613.34.1 ID=mRNA_P-littoralis_Contig613.34.1|Name=mRNA_P-littoralis_Contig613.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4807bp|location=Sequence derived from alignment at P-littoralis_Contig613:115055..119861- (Pylaiella littoralis U1_48)
GTTCCCATTGGATGAATGCGGATGAATCATGCAAGTGCTTGTCCGATAGA
AACAGCAAAGGAAGAGGGAACAGGCAGGGGCACATATGAGACTGCTGTGC
ACAGGAACATATGCACGTGGGAAGCGATAAAAGTGGAAGACGCAAGAGGT
CAGTAAAGATCTTTGGTATGATGTGAGTTTCCACGTGCATCTACTTCTTT
CCCGCGGCGGACGGCGTAGACTGTGACTACATCACCTCTAAGCAAAAAAC
ACAAGATTCTCGAGCCTAGCTTCACCTATTGTCGCTCCAGATGCAGCTGT
AGATACACACCGATGGTCGCACCCGACACGACAGTCGTGCTGCATCGCCT
CACCGTCAGCTGGTATCCTTGCTGTTAGCAGCACCGCTAGCCACGACCGT
CGAGGGTCGGTTGATCAGGGTGTGGTTTTTGTGCTTGCTTCTTGAAAAGT
CTGGGTATTGAAGTTTCTTTTTCTATATTTCATTGACGATCTCCAGTTCC
AGCTCTCTCTCTCTCCAAGCAAGACACAGCCATCTCTGGCACGACTGACT
GATGTGTTTCGGTGATCGGAGTATCTTCTCGAGCTCCACCGTCGGTGCGA
CAGCAGTGCTGTCGCAGGTTCACGATGACTACATCATCAGCGGCGGCGGT
GTTCGTTTCGAGGGTGATTCAGACCGCAGCCCGACTTTCGGTTGGCGCAG
GCACGAAAGTTGAATTCGCAGTACTGCTGTCCTACCTTAGGTCGTACGGA
GTGCTTCGTGTAAGATACCACACCCCCCGGACCGATTTTCAAGGCACAAT
TACTCCACAGCGGAACGAGTGTGGGCTGGAAAGGGCGGCGTTGGTATCAT
CTCATCAAGAGCTTTCCAAAAACGCATCATTTGATGCTGGCACCCCCGTC
GGTGTGGAGTAATTGAGGTTTGAAAACCGGTCCAGGGGGTGTGTTGTCTT
CTGCGACCTACTTCGAAGTACGATGAACAAAAAGGGGGCTGCGCTCGCTC
GTTCCCGCGGGGTACGGTCCAGGGACTCGCTCTGCCTAAGGAATCGTAGG
CCTGTTTTTGTCGAGGCAAGGAACAGCAAGAACAGTGTACTTGCAGCGCG
CTGCCAATGTTTGTTGGTGACCGGTGTCGGATATAATGTTTTTGGGTAAA
TACTCCGTAATACTCACGGTATTCATACGAGCGTTGTTTCATACTTGTAT
GAAAGTCATGAGTGGAGACGAAAAAAACGGTTCAGAGACAGCAGTGGTCC
GGGGCGTTCTCTTGACAGGCATGTACAAAGTACTGCTGTTTTTCGTTTTG
TCGTGTCCACCTCCACATGATTTTCGTCCTCTCTTTATCTAACTTGATAA
GCACGCACGACTCAAGAATCAATACTTCGTACTTCGTATATTGCAAAGCA
CGCACGAGAGGGCGCTCAAAAACGACCTCCCCGTGTGCTGGTTCAATACC
CCAGGTATGATATCTGTAGGCGAAACCATGCAGCGGCGACGTGTATGTTG
GTACGCTAAGATCTGTTGCTGGGACCGTGATGCCGTAGGTCAAAAGCTTC
TCAACCCGCAACCACAATACCGCCGCTGCTGCTTAACTTATACGAACCTC
TCTTGACAGCGGTGAGTAGAACTGCTGCTAAAGGTCTTTAGTTCAAGAGG
CAGGGGATCGTGGCGGCGAGTGCACACAGCAGCAGTACTAGTGAAAGATA
TTGGTTTTGGACTGAGAAGATGCGGACGGTTTCTGTACCATGTAAACATA
TCATACTCTGGACCTCCAACACCACCACCCTAGCAGGAGATTTGCGTATG
CCAACGCACACACAAGTCACCGCCTCATGATTCCTTCTACTAATATCACA
CATCTGGTGGTACAACACAGCAGTGCATTTTGATTTCTAAGAATATCCGA
GACGCCGGCAACGAACTGATGATTTACACAACAGCATGCGACTAGATGCC
ATTGTGGCGTGTCTCCAAAAGGGATCAATGGTAGTAACAGTCCCGCCCGG
CACAATTTTGACACGCTTCACGCCGCTGTAGCCCAACGTATGGGTCCAAT
CTCTCGGTGATATAAGCGGTGTTCCTGGTCACATACATATATTCGGGCTG
GAGCGCTGTGCGAATGGAGCTCGCTTTCGAGTTAAACGTCGCCAAGTCCA
TTCACGTCAATGATGCCCCCTCCTGCGCCGGTCGCAAGGATAGGTACGAT
ATGTCGAGGTTCATTCATTCTCTGTACAGCATAACTCGAGTCTGAAAATG
GGCTTGTTTTGGCGGAGTCGGAAACTGCAGCAGTAGTAGTGACAAAATCG
ATCCGCTTGCAAGATTTGACCAACATCAAAACGTTGCATATCGAGATATT
TAGTTTAGCACGATCTTATGGCTATCCTGAGCAGCTCCATGTGTGTGTGT
CATGAATCTACATGACGATCCAAAACAAATCCTGCTTTTCGCCCGCCCAC
CTGCCCGTCTCCTTGTTTTGTGCTTGTACCCTATGTACCTGAGATGACGT
TCGTGACGCTGCTCGTCTCTTCATCGGCTGTTCATGTTTGTGATTTTTGC
AGGTTCGCCCACCACCGCCTCCTCGTCGTCTTCATTTTTATCACCGACGA
CTGAGGAGGATGGCCCGTGTCTCATCGCCCTTCGCGTCCTCCTTGGCGAA
ATGGATGGGGGACAGAATAACGACAATCGCTGTAGCCAATGGGTCTCGTC
CACGAGAGAGCTGCGCTTAGTATCCTTCGACCTGTGCAATGCTTGCCGAA
GCGCCCTGGCTTCCCGAGTTTGGATCGGCGAAAACACGCCGCGATCTCTG
TGGGCGAGAAGATCACGGCAACAGCGCGACGGCGACACAAGAGGCGGCCC
GAGCTTAGTGGGCACCCCTATCTCCAACAAGAGTGTGACAGGTCGGGAGT
CAACTCCGCCGCTTTTTCCTTCGACCCACCTCCGGCGGCGAATGTTGTCA
GACGTCCGCGCGACTACTGTCGTGTGGGACCGTTCGGCGGGCGAAATTTC
CTCCGCCCAAGATTTCCTTGAGAACGTGGTGCGCCTCAAGTTTGGGTTTC
ACTTCAACGAGCCGCTCGCTTTCAAGAAGACGGCACGCTTCCGTTGGCCC
GGGACCTTGGTGGCTCTGGACCTGGGCGTGAAGTTTCAACAAGACCTTTC
TGGCGTGTCTTTGCCCCCCGCGCTTCTCGAGCTGAGGTTCGGCGCGATGT
TCAACCGGAGCATCCAGAGGGTATCATGGCCGTCGCGGTTAGTGAGATTG
ACCTTTGGGGCGAGCTTCAACAAGCCGATCATCGGCATCAGGTGGCCTGC
GACCCTGAAGCACCTTGAGTTCGCGGACAACTTCGACCAGCCGTTCGTCC
AACGCTCCACTACCGCAAGTGCTGCCGACTCGGTCGTCTGGCCGCCGCTC
CTGGAATCTTTGAAGTTCGGCACAGACTTTAGCCACACGATCGGGGGGGG
TGGTGGCACCCTGGCGGGGGCAGGAGCGGAAGGCTGTGGAAGGAACGGCT
GCTGTGGGGGCGGTGGCGGGCTGCCGCCGTCCCTCAAGCGACTGACGCTA
TCGGAGGGGTTTTTGCAGCCGATCGATACCGTGACTTGGCCGGATGGACT
AAATGAGCTCAACTTGGATTGTTGCCACGTCAGCGCAGCTGGGGAGGGGC
GTTTGCCAGCGGGGCTGAAACGGCTAAGGATAGATTTGGACTTTCACCAG
CCAATTCGAGACGTGATGCCACTGTTGCCCGCCACGCTCGAGGAGGTAGC
GTTCGGCAACACCTTCAACCAGCCCCTTCGAGGGGTCAAGTGGCCGGACG
GGCTCAAGAAAGTGGCGTTTGGCGCGTCGTTCAACAAGCCCATCGAGGAT
GACAGTGTTCGATTTCCCCCTCACCTAGAGGAATTGGAGTTCGGGTTCAG
ATTTAACCAACAAATCACCCACGTCGCTTGGCCGGCATCTCTACAATACC
TGACGTTTCGGGACCACTTTAACCAGCCAGTCGCCGCCGTTTGCTGGCCG
GAAGGATTGAAAGAACTACGATTCGGCCGCATGTTCGACAGACCTTTTTC
GAGCGGTGGCGAGGCCGTGCGCTGGCCCACACGACTGTGCAAGCTGGCGC
TAGGCAAGAATTTCAACCAGCCGGTGCACGCCTTCTGTTTGCCCCCCGGT
CTTGCAGAGCTAGAGTTGAGCGAGGGGTGCCAGCAGCCGCTAGAGGGAGT
GAGGTGGCCGGCCCGGCTGAGGTTGATAACCGTAGGTTTGGGGTTCGGGG
GTGGAATGGCGGAGCTGGCCGACGGTGGTGGACTGGCGTTATCTGAAGGC
TGTCGATTAAGACGAAGTTGACTTGAGCTTGTTAATTCGATTTTTTTTTT
CTCCCGAGGGAGGGAGAGAAAGATGTGCATGCTTCGCGAAAAGGGACAAT
GTTATTGTGCACGATATTGGCGACCAGGGAGAGCGTAGTCGCTCAACCTG
AGGGGGCTGCAGAATACGAGAGAGCGTGCGCTATTTTTCTTTCGAGCCAT
CGGCGCATACACCCGTGCTTGAATTGTTCGAGGCTTGCTGACTTTTGCAG
TACGGGATGTATTACTTTTGCCGATACGTGGGCCCTCGCAAGTACCCCTT
TTCCTTCATTATTTGTCTCTACTTGAAAACTGCATCTTGTCGATGACGTC
ATCCAATTTTCGGCTCTCCTTATGCCCGCCGATGACGCACATGCCCCCTT
TTTTAATTATTTTTTTGTATCCTCCGAATCTAGTCCATGCGAGAAGAGCA
CACATAACGTGACCGCGCACGAATCATGCATGTTGGAATCGGTTCATAGA
GCGTGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig613:115055..119861-

>mRNA_P-littoralis_Contig613.34.1 ID=mRNA_P-littoralis_Contig613.34.1|Name=mRNA_P-littoralis_Contig613.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1902bp|location=Sequence derived from alignment at P-littoralis_Contig613:115055..119861- (Pylaiella littoralis U1_48)
ATGCGGATGAATCATGCAAGTGCTTGTCCGATAGAAACAGCAAAGGAAGA
GGGAACAGGCAGGGGCACATATGAGACTGCTGTGCACAGGAACATATGCA
CGTGGGAAGCGATAAAAGTGGAAGACGCAAGAGGTTCGCCCACCACCGCC
TCCTCGTCGTCTTCATTTTTATCACCGACGACTGAGGAGGATGGCCCGTG
TCTCATCGCCCTTCGCGTCCTCCTTGGCGAAATGGATGGGGGACAGAATA
ACGACAATCGCTGTAGCCAATGGGTCTCGTCCACGAGAGAGCTGCGCTTA
GTATCCTTCGACCTGTGCAATGCTTGCCGAAGCGCCCTGGCTTCCCGAGT
TTGGATCGGCGAAAACACGCCGCGATCTCTGTGGGCGAGAAGATCACGGC
AACAGCGCGACGGCGACACAAGAGGCGGCCCGAGCTTAGTGGGCACCCCT
ATCTCCAACAAGAGTGTGACAGGTCGGGAGTCAACTCCGCCGCTTTTTCC
TTCGACCCACCTCCGGCGGCGAATGTTGTCAGACGTCCGCGCGACTACTG
TCGTGTGGGACCGTTCGGCGGGCGAAATTTCCTCCGCCCAAGATTTCCTT
GAGAACGTGGTGCGCCTCAAGTTTGGGTTTCACTTCAACGAGCCGCTCGC
TTTCAAGAAGACGGCACGCTTCCGTTGGCCCGGGACCTTGGTGGCTCTGG
ACCTGGGCGTGAAGTTTCAACAAGACCTTTCTGGCGTGTCTTTGCCCCCC
GCGCTTCTCGAGCTGAGGTTCGGCGCGATGTTCAACCGGAGCATCCAGAG
GGTATCATGGCCGTCGCGGTTAGTGAGATTGACCTTTGGGGCGAGCTTCA
ACAAGCCGATCATCGGCATCAGGTGGCCTGCGACCCTGAAGCACCTTGAG
TTCGCGGACAACTTCGACCAGCCGTTCGTCCAACGCTCCACTACCGCAAG
TGCTGCCGACTCGGTCGTCTGGCCGCCGCTCCTGGAATCTTTGAAGTTCG
GCACAGACTTTAGCCACACGATCGGGGGGGGTGGTGGCACCCTGGCGGGG
GCAGGAGCGGAAGGCTGTGGAAGGAACGGCTGCTGTGGGGGCGGTGGCGG
GCTGCCGCCGTCCCTCAAGCGACTGACGCTATCGGAGGGGTTTTTGCAGC
CGATCGATACCGTGACTTGGCCGGATGGACTAAATGAGCTCAACTTGGAT
TGTTGCCACGTCAGCGCAGCTGGGGAGGGGCGTTTGCCAGCGGGGCTGAA
ACGGCTAAGGATAGATTTGGACTTTCACCAGCCAATTCGAGACGTGATGC
CACTGTTGCCCGCCACGCTCGAGGAGGTAGCGTTCGGCAACACCTTCAAC
CAGCCCCTTCGAGGGGTCAAGTGGCCGGACGGGCTCAAGAAAGTGGCGTT
TGGCGCGTCGTTCAACAAGCCCATCGAGGATGACAGTGTTCGATTTCCCC
CTCACCTAGAGGAATTGGAGTTCGGGTTCAGATTTAACCAACAAATCACC
CACGTCGCTTGGCCGGCATCTCTACAATACCTGACGTTTCGGGACCACTT
TAACCAGCCAGTCGCCGCCGTTTGCTGGCCGGAAGGATTGAAAGAACTAC
GATTCGGCCGCATGTTCGACAGACCTTTTTCGAGCGGTGGCGAGGCCGTG
CGCTGGCCCACACGACTGTGCAAGCTGGCGCTAGGCAAGAATTTCAACCA
GCCGGTGCACGCCTTCTGTTTGCCCCCCGGTCTTGCAGAGCTAGAGTTGA
GCGAGGGGTGCCAGCAGCCGCTAGAGGGAGTGAGGTGGCCGGCCCGGCTG
AGGTTGATAACCGTAGGTTTGGGGTTCGGGGGTGGAATGGCGGAGCTGGC
CGACGGTGGTGGACTGGCGTTATCTGAAGGCTGTCGATTAAGACGAAGTT
GA
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